Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3973

Experiment: KB with Plumbagin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3972 and Psyr_3973 are separated by 27 nucleotidesPsyr_3973 and Psyr_3974 overlap by 4 nucleotidesPsyr_3974 and Psyr_3975 overlap by 4 nucleotides Psyr_3972: Psyr_3972 - ABC transporter, periplasmic substrate-binding protein, at 4,719,943 to 4,721,010 _3972 Psyr_3973: Psyr_3973 - Binding-protein-dependent transport systems inner membrane component, at 4,721,038 to 4,721,853 _3973 Psyr_3974: Psyr_3974 - ABC transporter, at 4,721,850 to 4,722,632 _3974 Psyr_3975: Psyr_3975 - conserved hypothetical protein, at 4,722,629 to 4,723,354 _3975 Position (kb) 4721 4722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.075 kb on + strand, within Psyr_3972at 4720.118 kb on - strand, within Psyr_3972at 4720.153 kb on + strand, within Psyr_3972at 4720.153 kb on + strand, within Psyr_3972at 4720.153 kb on + strand, within Psyr_3972at 4720.154 kb on - strand, within Psyr_3972at 4720.154 kb on - strand, within Psyr_3972at 4720.378 kb on + strand, within Psyr_3972at 4720.378 kb on + strand, within Psyr_3972at 4720.378 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.974 kb on + strandat 4720.974 kb on + strandat 4720.974 kb on + strandat 4720.975 kb on - strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4721.008 kb on + strandat 4721.008 kb on + strandat 4721.009 kb on - strandat 4721.009 kb on - strandat 4721.022 kb on + strandat 4721.023 kb on - strandat 4721.081 kb on + strandat 4721.120 kb on - strand, within Psyr_3973at 4721.120 kb on - strand, within Psyr_3973at 4721.243 kb on - strand, within Psyr_3973at 4721.729 kb on - strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.756 kb on - strand, within Psyr_3973at 4721.756 kb on - strand, within Psyr_3973at 4721.756 kb on - strand, within Psyr_3973at 4721.887 kb on - strandat 4722.258 kb on + strand, within Psyr_3974at 4722.499 kb on + strand, within Psyr_3974at 4722.500 kb on - strand, within Psyr_3974at 4722.500 kb on - strand, within Psyr_3974at 4722.546 kb on + strand, within Psyr_3974at 4722.546 kb on + strand, within Psyr_3974at 4722.547 kb on - strand, within Psyr_3974at 4722.547 kb on - strand, within Psyr_3974at 4722.547 kb on - strand, within Psyr_3974at 4722.547 kb on - strand, within Psyr_3974at 4722.705 kb on + strand, within Psyr_3975at 4722.706 kb on - strand, within Psyr_3975

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
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4,720,051 + Psyr_3972 0.10 +1.2
4,720,051 + Psyr_3972 0.10 -0.9
4,720,051 + Psyr_3972 0.10 -1.5
4,720,051 + Psyr_3972 0.10 +0.7
4,720,051 + Psyr_3972 0.10 -1.7
4,720,052 - Psyr_3972 0.10 +0.3
4,720,052 - Psyr_3972 0.10 +0.1
4,720,052 - Psyr_3972 0.10 -2.8
4,720,052 - Psyr_3972 0.10 -0.1
4,720,075 + Psyr_3972 0.12 +0.7
4,720,118 - Psyr_3972 0.16 -1.1
4,720,153 + Psyr_3972 0.20 +1.4
4,720,153 + Psyr_3972 0.20 +0.3
4,720,153 + Psyr_3972 0.20 +1.1
4,720,154 - Psyr_3972 0.20 -1.1
4,720,154 - Psyr_3972 0.20 +0.4
4,720,378 + Psyr_3972 0.41 -2.6
4,720,378 + Psyr_3972 0.41 +1.0
4,720,378 + Psyr_3972 0.41 +0.4
4,720,484 + Psyr_3972 0.51 +0.6
4,720,484 + Psyr_3972 0.51 -0.5
4,720,484 + Psyr_3972 0.51 +1.4
4,720,484 + Psyr_3972 0.51 +0.3
4,720,484 + Psyr_3972 0.51 -0.8
4,720,485 - Psyr_3972 0.51 +0.2
4,720,485 - Psyr_3972 0.51 -1.1
4,720,485 - Psyr_3972 0.51 -1.1
4,720,485 - Psyr_3972 0.51 +3.3
4,720,485 - Psyr_3972 0.51 +0.4
4,720,485 - Psyr_3972 0.51 -0.2
4,720,485 - Psyr_3972 0.51 -0.4
4,720,485 - Psyr_3972 0.51 +1.7
4,720,974 + +1.1
4,720,974 + -0.2
4,720,974 + -0.3
4,720,975 - -0.3
4,720,978 + -2.0
4,720,978 + +0.5
4,720,978 + -0.5
4,720,978 + -0.1
4,720,978 + +1.1
4,720,978 + +1.3
4,720,978 + +0.5
4,720,978 + +0.2
4,720,978 + +0.5
4,720,978 + -1.1
4,720,979 - -0.3
4,720,979 - -2.6
4,720,979 - -1.9
4,720,979 - -0.6
4,720,979 - +0.9
4,720,979 - +1.4
4,720,979 - -0.1
4,720,979 - +1.0
4,720,979 - +0.3
4,721,008 + +0.4
4,721,008 + -0.7
4,721,009 - -0.6
4,721,009 - +0.7
4,721,022 + -0.9
4,721,023 - -1.5
4,721,081 + -0.2
4,721,120 - Psyr_3973 0.10 +1.2
4,721,120 - Psyr_3973 0.10 -3.3
4,721,243 - Psyr_3973 0.25 -1.1
4,721,729 - Psyr_3973 0.85 -1.2
4,721,755 + Psyr_3973 0.88 -0.7
4,721,755 + Psyr_3973 0.88 +0.7
4,721,755 + Psyr_3973 0.88 +1.1
4,721,755 + Psyr_3973 0.88 +2.2
4,721,755 + Psyr_3973 0.88 +1.3
4,721,756 - Psyr_3973 0.88 -1.9
4,721,756 - Psyr_3973 0.88 +2.1
4,721,756 - Psyr_3973 0.88 -1.9
4,721,887 - +0.7
4,722,258 + Psyr_3974 0.52 -1.3
4,722,499 + Psyr_3974 0.83 +3.1
4,722,500 - Psyr_3974 0.83 -0.6
4,722,500 - Psyr_3974 0.83 +1.8
4,722,546 + Psyr_3974 0.89 +0.1
4,722,546 + Psyr_3974 0.89 +0.1
4,722,547 - Psyr_3974 0.89 +1.1
4,722,547 - Psyr_3974 0.89 +1.1
4,722,547 - Psyr_3974 0.89 -1.3
4,722,547 - Psyr_3974 0.89 -1.9
4,722,705 + Psyr_3975 0.10 -2.7
4,722,706 - Psyr_3975 0.11 +0.9

Or see this region's nucleotide sequence