Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3969

Experiment: KB with Plumbagin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3968 and Psyr_3969 overlap by 8 nucleotidesPsyr_3969 and Psyr_3970 are separated by 30 nucleotidesPsyr_3970 and Psyr_3971 are separated by 208 nucleotides Psyr_3968: Psyr_3968 - Protein of unknown function DUF112, at 4,715,438 to 4,716,952 _3968 Psyr_3969: Psyr_3969 - Putative ammonia monooxygenase, at 4,716,945 to 4,717,979 _3969 Psyr_3970: Psyr_3970 - Uracil-DNA glycosylase, at 4,718,010 to 4,718,702 _3970 Psyr_3971: Psyr_3971 - lipoprotein, putative, at 4,718,911 to 4,719,381 _3971 Position (kb) 4716 4717 4718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4716.014 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.036 kb on + strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.037 kb on - strand, within Psyr_3968at 4716.202 kb on + strand, within Psyr_3968at 4716.202 kb on + strand, within Psyr_3968at 4716.202 kb on + strand, within Psyr_3968at 4716.203 kb on - strand, within Psyr_3968at 4716.203 kb on - strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.278 kb on + strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.279 kb on - strand, within Psyr_3968at 4716.458 kb on + strand, within Psyr_3968at 4716.458 kb on + strand, within Psyr_3968at 4716.653 kb on + strand, within Psyr_3968at 4716.653 kb on + strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.654 kb on - strand, within Psyr_3968at 4716.704 kb on - strand, within Psyr_3968at 4716.713 kb on + strand, within Psyr_3968at 4716.713 kb on + strand, within Psyr_3968at 4717.186 kb on + strand, within Psyr_3969at 4717.187 kb on - strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4718.062 kb on + strandat 4718.062 kb on + strandat 4718.063 kb on - strandat 4718.063 kb on - strandat 4718.107 kb on + strand, within Psyr_3970at 4718.107 kb on + strand, within Psyr_3970at 4718.107 kb on + strand, within Psyr_3970at 4718.108 kb on - strand, within Psyr_3970at 4718.407 kb on + strand, within Psyr_3970at 4718.407 kb on + strand, within Psyr_3970at 4718.407 kb on + strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.697 kb on - strandat 4718.706 kb on + strandat 4718.706 kb on + strandat 4718.707 kb on - strandat 4718.707 kb on - strandat 4718.838 kb on - strandat 4718.838 kb on - strandat 4718.838 kb on - strandat 4718.838 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
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4,716,014 + Psyr_3968 0.38 +0.4
4,716,036 + Psyr_3968 0.39 -0.1
4,716,036 + Psyr_3968 0.39 -2.6
4,716,036 + Psyr_3968 0.39 -0.2
4,716,036 + Psyr_3968 0.39 +0.7
4,716,036 + Psyr_3968 0.39 +0.7
4,716,036 + Psyr_3968 0.39 +0.1
4,716,036 + Psyr_3968 0.39 -1.9
4,716,036 + Psyr_3968 0.39 -0.5
4,716,036 + Psyr_3968 0.39 +2.8
4,716,036 + Psyr_3968 0.39 -1.3
4,716,036 + Psyr_3968 0.39 +3.2
4,716,036 + Psyr_3968 0.39 +1.9
4,716,036 + Psyr_3968 0.39 +0.7
4,716,036 + Psyr_3968 0.39 +1.7
4,716,036 + Psyr_3968 0.39 +1.4
4,716,036 + Psyr_3968 0.39 -1.4
4,716,036 + Psyr_3968 0.39 +4.4
4,716,036 + Psyr_3968 0.39 +1.2
4,716,036 + Psyr_3968 0.39 +0.1
4,716,036 + Psyr_3968 0.39 +0.8
4,716,036 + Psyr_3968 0.39 -3.2
4,716,036 + Psyr_3968 0.39 +0.5
4,716,037 - Psyr_3968 0.40 +0.5
4,716,037 - Psyr_3968 0.40 +0.9
4,716,037 - Psyr_3968 0.40 -0.6
4,716,037 - Psyr_3968 0.40 +1.1
4,716,037 - Psyr_3968 0.40 -0.5
4,716,037 - Psyr_3968 0.40 -1.4
4,716,037 - Psyr_3968 0.40 -0.1
4,716,037 - Psyr_3968 0.40 +1.1
4,716,037 - Psyr_3968 0.40 +0.3
4,716,037 - Psyr_3968 0.40 -0.1
4,716,037 - Psyr_3968 0.40 +0.6
4,716,037 - Psyr_3968 0.40 -1.3
4,716,037 - Psyr_3968 0.40 +2.7
4,716,037 - Psyr_3968 0.40 -0.0
4,716,037 - Psyr_3968 0.40 +0.3
4,716,037 - Psyr_3968 0.40 +0.7
4,716,202 + Psyr_3968 0.50 -0.5
4,716,202 + Psyr_3968 0.50 +3.1
4,716,202 + Psyr_3968 0.50 -1.5
4,716,203 - Psyr_3968 0.50 -1.1
4,716,203 - Psyr_3968 0.50 -0.2
4,716,278 + Psyr_3968 0.55 -0.9
4,716,278 + Psyr_3968 0.55 +2.1
4,716,278 + Psyr_3968 0.55 -2.6
4,716,278 + Psyr_3968 0.55 -1.5
4,716,278 + Psyr_3968 0.55 -0.6
4,716,278 + Psyr_3968 0.55 -1.8
4,716,279 - Psyr_3968 0.56 -0.0
4,716,279 - Psyr_3968 0.56 +0.6
4,716,279 - Psyr_3968 0.56 +1.9
4,716,279 - Psyr_3968 0.56 +0.3
4,716,279 - Psyr_3968 0.56 -0.4
4,716,279 - Psyr_3968 0.56 -1.9
4,716,279 - Psyr_3968 0.56 -0.3
4,716,279 - Psyr_3968 0.56 +0.2
4,716,279 - Psyr_3968 0.56 -1.3
4,716,458 + Psyr_3968 0.67 +0.1
4,716,458 + Psyr_3968 0.67 +0.7
4,716,653 + Psyr_3968 0.80 -0.5
4,716,653 + Psyr_3968 0.80 +0.1
4,716,654 - Psyr_3968 0.80 +0.7
4,716,654 - Psyr_3968 0.80 -0.0
4,716,654 - Psyr_3968 0.80 -0.1
4,716,654 - Psyr_3968 0.80 +0.1
4,716,654 - Psyr_3968 0.80 -0.5
4,716,654 - Psyr_3968 0.80 +0.6
4,716,704 - Psyr_3968 0.84 -0.8
4,716,713 + Psyr_3968 0.84 +1.1
4,716,713 + Psyr_3968 0.84 +1.2
4,717,186 + Psyr_3969 0.23 -1.0
4,717,187 - Psyr_3969 0.23 +0.1
4,717,431 + Psyr_3969 0.47 -0.9
4,717,431 + Psyr_3969 0.47 -1.1
4,717,431 + Psyr_3969 0.47 -2.1
4,717,431 + Psyr_3969 0.47 +0.7
4,717,432 - Psyr_3969 0.47 -3.2
4,717,432 - Psyr_3969 0.47 +0.3
4,717,432 - Psyr_3969 0.47 -0.7
4,717,432 - Psyr_3969 0.47 -3.5
4,717,432 - Psyr_3969 0.47 -1.3
4,717,432 - Psyr_3969 0.47 +0.7
4,717,435 + Psyr_3969 0.47 -1.2
4,717,435 + Psyr_3969 0.47 +1.1
4,717,435 + Psyr_3969 0.47 -2.4
4,717,435 + Psyr_3969 0.47 +0.0
4,717,436 - Psyr_3969 0.47 +2.7
4,717,436 - Psyr_3969 0.47 -2.6
4,717,436 - Psyr_3969 0.47 -0.5
4,718,062 + -0.1
4,718,062 + -0.3
4,718,063 - +1.7
4,718,063 - -0.3
4,718,107 + Psyr_3970 0.14 -1.9
4,718,107 + Psyr_3970 0.14 +1.1
4,718,107 + Psyr_3970 0.14 +1.1
4,718,108 - Psyr_3970 0.14 +1.1
4,718,407 + Psyr_3970 0.57 -0.0
4,718,407 + Psyr_3970 0.57 -3.0
4,718,407 + Psyr_3970 0.57 -1.4
4,718,408 - Psyr_3970 0.57 +0.3
4,718,408 - Psyr_3970 0.57 -3.5
4,718,408 - Psyr_3970 0.57 +1.0
4,718,408 - Psyr_3970 0.57 +0.4
4,718,408 - Psyr_3970 0.57 -0.6
4,718,408 - Psyr_3970 0.57 -0.2
4,718,629 + Psyr_3970 0.89 -0.3
4,718,629 + Psyr_3970 0.89 -0.2
4,718,629 + Psyr_3970 0.89 -0.9
4,718,629 + Psyr_3970 0.89 +1.1
4,718,629 + Psyr_3970 0.89 +0.1
4,718,629 + Psyr_3970 0.89 +0.4
4,718,629 + Psyr_3970 0.89 -0.1
4,718,629 + Psyr_3970 0.89 +2.5
4,718,629 + Psyr_3970 0.89 +0.5
4,718,629 + Psyr_3970 0.89 -1.5
4,718,629 + Psyr_3970 0.89 -0.5
4,718,629 + Psyr_3970 0.89 -0.9
4,718,629 + Psyr_3970 0.89 +0.7
4,718,629 + Psyr_3970 0.89 -1.9
4,718,630 - Psyr_3970 0.89 -1.3
4,718,630 - Psyr_3970 0.89 -0.5
4,718,630 - Psyr_3970 0.89 -1.1
4,718,630 - Psyr_3970 0.89 -0.7
4,718,630 - Psyr_3970 0.89 +0.4
4,718,630 - Psyr_3970 0.89 +0.1
4,718,630 - Psyr_3970 0.89 +1.1
4,718,630 - Psyr_3970 0.89 +1.3
4,718,630 - Psyr_3970 0.89 +1.9
4,718,630 - Psyr_3970 0.89 -1.0
4,718,630 - Psyr_3970 0.89 -1.3
4,718,630 - Psyr_3970 0.89 +1.9
4,718,630 - Psyr_3970 0.89 +1.1
4,718,630 - Psyr_3970 0.89 -0.7
4,718,697 - +0.9
4,718,706 + -1.4
4,718,706 + -0.3
4,718,707 - +0.8
4,718,707 - -0.2
4,718,838 - +0.7
4,718,838 - -0.0
4,718,838 - +0.2
4,718,838 - -1.9

Or see this region's nucleotide sequence