Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3834

Experiment: KB with Plumbagin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3832 and Psyr_3833 overlap by 11 nucleotidesPsyr_3833 and Psyr_3834 are separated by 317 nucleotidesPsyr_3834 and Psyr_3835 are separated by 68 nucleotidesPsyr_3835 and Psyr_3836 are separated by 125 nucleotides Psyr_3832: Psyr_3832 - Prevent-host-death protein, at 4,568,993 to 4,569,238 _3832 Psyr_3833: Psyr_3833 - Plasmid stabilization system, at 4,569,228 to 4,569,518 _3833 Psyr_3834: Psyr_3834 - AMP-dependent synthetase and ligase, at 4,569,836 to 4,571,527 _3834 Psyr_3835: Psyr_3835 - hypothetical protein, at 4,571,596 to 4,571,757 _3835 Psyr_3836: Psyr_3836 - AMP-dependent synthetase and ligase, at 4,571,883 to 4,573,571 _3836 Position (kb) 4569 4570 4571 4572Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4568.908 kb on + strandat 4568.909 kb on - strandat 4569.223 kb on + strandat 4569.223 kb on + strandat 4569.223 kb on + strandat 4569.223 kb on + strandat 4569.223 kb on + strandat 4569.223 kb on + strandat 4569.224 kb on - strandat 4569.224 kb on - strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.225 kb on + strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.226 kb on - strandat 4569.236 kb on + strandat 4569.236 kb on + strandat 4569.237 kb on - strandat 4569.237 kb on - strandat 4569.237 kb on - strandat 4569.378 kb on + strand, within Psyr_3833at 4569.378 kb on + strand, within Psyr_3833at 4569.418 kb on - strand, within Psyr_3833at 4569.434 kb on + strand, within Psyr_3833at 4569.434 kb on + strand, within Psyr_3833at 4569.434 kb on + strand, within Psyr_3833at 4569.434 kb on + strand, within Psyr_3833at 4569.435 kb on - strand, within Psyr_3833at 4569.435 kb on - strand, within Psyr_3833at 4569.435 kb on - strand, within Psyr_3833at 4569.482 kb on + strand, within Psyr_3833at 4569.486 kb on + strand, within Psyr_3833at 4569.486 kb on + strand, within Psyr_3833at 4569.486 kb on + strand, within Psyr_3833at 4569.487 kb on - strand, within Psyr_3833at 4569.538 kb on - strandat 4569.538 kb on - strandat 4569.538 kb on - strandat 4569.648 kb on - strandat 4569.744 kb on + strandat 4569.745 kb on - strandat 4569.745 kb on - strandat 4569.778 kb on + strandat 4569.778 kb on + strandat 4569.781 kb on - strandat 4569.781 kb on - strandat 4569.782 kb on + strandat 4569.783 kb on - strandat 4569.837 kb on + strandat 4569.837 kb on + strandat 4569.837 kb on + strandat 4569.837 kb on + strandat 4569.837 kb on + strandat 4569.837 kb on + strandat 4569.837 kb on + strandat 4569.838 kb on - strandat 4569.838 kb on - strandat 4569.838 kb on - strandat 4569.838 kb on - strandat 4570.106 kb on + strand, within Psyr_3834at 4570.106 kb on + strand, within Psyr_3834at 4570.156 kb on + strand, within Psyr_3834at 4570.157 kb on - strand, within Psyr_3834at 4570.157 kb on - strand, within Psyr_3834at 4570.157 kb on - strand, within Psyr_3834at 4570.186 kb on - strand, within Psyr_3834at 4570.186 kb on - strand, within Psyr_3834at 4570.407 kb on + strand, within Psyr_3834at 4570.407 kb on + strand, within Psyr_3834at 4570.407 kb on + strand, within Psyr_3834at 4570.408 kb on - strand, within Psyr_3834at 4570.408 kb on - strand, within Psyr_3834at 4570.456 kb on - strand, within Psyr_3834at 4570.456 kb on - strand, within Psyr_3834at 4570.606 kb on + strand, within Psyr_3834at 4570.606 kb on + strand, within Psyr_3834at 4570.606 kb on + strand, within Psyr_3834at 4570.737 kb on + strand, within Psyr_3834at 4570.737 kb on + strand, within Psyr_3834at 4570.738 kb on - strand, within Psyr_3834at 4570.738 kb on - strand, within Psyr_3834at 4570.746 kb on + strand, within Psyr_3834at 4570.746 kb on + strand, within Psyr_3834at 4570.746 kb on + strand, within Psyr_3834at 4570.747 kb on - strand, within Psyr_3834at 4570.887 kb on + strand, within Psyr_3834at 4571.016 kb on + strand, within Psyr_3834at 4571.016 kb on + strand, within Psyr_3834at 4571.016 kb on + strand, within Psyr_3834at 4571.016 kb on + strand, within Psyr_3834at 4571.017 kb on - strand, within Psyr_3834at 4571.017 kb on - strand, within Psyr_3834at 4571.017 kb on - strand, within Psyr_3834at 4571.203 kb on - strand, within Psyr_3834at 4571.203 kb on - strand, within Psyr_3834at 4571.203 kb on - strand, within Psyr_3834at 4571.273 kb on + strand, within Psyr_3834at 4571.273 kb on + strand, within Psyr_3834at 4571.273 kb on + strand, within Psyr_3834at 4571.273 kb on + strand, within Psyr_3834at 4571.273 kb on + strand, within Psyr_3834at 4571.274 kb on - strand, within Psyr_3834at 4571.274 kb on - strand, within Psyr_3834at 4571.274 kb on - strand, within Psyr_3834at 4571.320 kb on + strand, within Psyr_3834at 4571.320 kb on + strand, within Psyr_3834at 4571.321 kb on - strand, within Psyr_3834at 4571.321 kb on - strand, within Psyr_3834at 4571.361 kb on + strandat 4571.361 kb on + strandat 4571.361 kb on + strandat 4571.362 kb on - strandat 4571.362 kb on - strandat 4571.373 kb on + strandat 4571.373 kb on + strandat 4571.373 kb on + strandat 4571.373 kb on + strandat 4571.374 kb on - strandat 4571.374 kb on - strandat 4571.374 kb on - strandat 4571.519 kb on - strandat 4571.519 kb on - strandat 4571.597 kb on + strandat 4571.597 kb on + strandat 4571.598 kb on - strandat 4571.598 kb on - strandat 4571.604 kb on + strandat 4571.622 kb on + strand, within Psyr_3835at 4571.623 kb on - strand, within Psyr_3835at 4571.650 kb on + strand, within Psyr_3835at 4571.744 kb on - strandat 4571.798 kb on + strandat 4571.858 kb on + strandat 4571.859 kb on - strandat 4572.089 kb on + strand, within Psyr_3836at 4572.428 kb on + strand, within Psyr_3836

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
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4,568,908 + -0.2
4,568,909 - +0.5
4,569,223 + -2.9
4,569,223 + +2.1
4,569,223 + +1.9
4,569,223 + -0.1
4,569,223 + +1.0
4,569,223 + -0.1
4,569,224 - -0.6
4,569,224 - -0.2
4,569,225 + +0.4
4,569,225 + -1.9
4,569,225 + -0.2
4,569,225 + +0.2
4,569,225 + +0.7
4,569,225 + -0.2
4,569,225 + +0.7
4,569,225 + +0.3
4,569,225 + +1.3
4,569,225 + +0.6
4,569,225 + +1.8
4,569,225 + +0.1
4,569,225 + +1.1
4,569,225 + -0.1
4,569,225 + -0.5
4,569,225 + -0.3
4,569,225 + +0.8
4,569,225 + +1.5
4,569,225 + +2.1
4,569,225 + -0.2
4,569,225 + +0.2
4,569,225 + -0.7
4,569,225 + +0.4
4,569,225 + -2.1
4,569,225 + -0.3
4,569,225 + +0.1
4,569,225 + +1.1
4,569,225 + -0.8
4,569,225 + +0.9
4,569,225 + +0.3
4,569,225 + -1.2
4,569,225 + -0.6
4,569,225 + -1.1
4,569,225 + +0.2
4,569,225 + +2.5
4,569,226 - -0.9
4,569,226 - +0.5
4,569,226 - +0.7
4,569,226 - -1.7
4,569,226 - -0.0
4,569,226 - -1.7
4,569,226 - +1.4
4,569,226 - -1.4
4,569,226 - -1.8
4,569,226 - +1.7
4,569,226 - -0.8
4,569,226 - +2.3
4,569,226 - +0.8
4,569,226 - +0.2
4,569,226 - +0.4
4,569,226 - -0.1
4,569,226 - +1.1
4,569,226 - +0.3
4,569,226 - -1.2
4,569,226 - +0.5
4,569,226 - +0.7
4,569,226 - -0.7
4,569,226 - -1.5
4,569,226 - +2.1
4,569,226 - +2.2
4,569,226 - +0.4
4,569,226 - -1.2
4,569,226 - -0.5
4,569,226 - -0.5
4,569,226 - -0.7
4,569,226 - -0.6
4,569,226 - -0.8
4,569,226 - -3.6
4,569,226 - +1.1
4,569,226 - -1.1
4,569,236 + -0.8
4,569,236 + +0.7
4,569,237 - +0.2
4,569,237 - -0.8
4,569,237 - +0.4
4,569,378 + Psyr_3833 0.52 -1.9
4,569,378 + Psyr_3833 0.52 +1.1
4,569,418 - Psyr_3833 0.65 +1.8
4,569,434 + Psyr_3833 0.71 -1.1
4,569,434 + Psyr_3833 0.71 -2.1
4,569,434 + Psyr_3833 0.71 +0.2
4,569,434 + Psyr_3833 0.71 +0.2
4,569,435 - Psyr_3833 0.71 +0.2
4,569,435 - Psyr_3833 0.71 -2.7
4,569,435 - Psyr_3833 0.71 -3.4
4,569,482 + Psyr_3833 0.87 -0.1
4,569,486 + Psyr_3833 0.89 +0.3
4,569,486 + Psyr_3833 0.89 +1.1
4,569,486 + Psyr_3833 0.89 +0.5
4,569,487 - Psyr_3833 0.89 -2.2
4,569,538 - +0.2
4,569,538 - +1.8
4,569,538 - -0.3
4,569,648 - +0.6
4,569,744 + -1.7
4,569,745 - -2.6
4,569,745 - -0.7
4,569,778 + +0.7
4,569,778 + -1.7
4,569,781 - -0.4
4,569,781 - -0.3
4,569,782 + -0.8
4,569,783 - +1.0
4,569,837 + -0.3
4,569,837 + -0.8
4,569,837 + +0.9
4,569,837 + -0.0
4,569,837 + +0.8
4,569,837 + -0.1
4,569,837 + +0.1
4,569,838 - -0.7
4,569,838 - -1.2
4,569,838 - +2.2
4,569,838 - +1.1
4,570,106 + Psyr_3834 0.16 +3.7
4,570,106 + Psyr_3834 0.16 +1.0
4,570,156 + Psyr_3834 0.19 +1.3
4,570,157 - Psyr_3834 0.19 +0.1
4,570,157 - Psyr_3834 0.19 +1.9
4,570,157 - Psyr_3834 0.19 +0.4
4,570,186 - Psyr_3834 0.21 +2.7
4,570,186 - Psyr_3834 0.21 +0.7
4,570,407 + Psyr_3834 0.34 +0.9
4,570,407 + Psyr_3834 0.34 -1.7
4,570,407 + Psyr_3834 0.34 +3.0
4,570,408 - Psyr_3834 0.34 +0.6
4,570,408 - Psyr_3834 0.34 +0.1
4,570,456 - Psyr_3834 0.37 +1.7
4,570,456 - Psyr_3834 0.37 +3.0
4,570,606 + Psyr_3834 0.46 +0.6
4,570,606 + Psyr_3834 0.46 +1.2
4,570,606 + Psyr_3834 0.46 +1.6
4,570,737 + Psyr_3834 0.53 +1.3
4,570,737 + Psyr_3834 0.53 +1.1
4,570,738 - Psyr_3834 0.53 +1.5
4,570,738 - Psyr_3834 0.53 +1.5
4,570,746 + Psyr_3834 0.54 +0.1
4,570,746 + Psyr_3834 0.54 +1.4
4,570,746 + Psyr_3834 0.54 +0.8
4,570,747 - Psyr_3834 0.54 +1.2
4,570,887 + Psyr_3834 0.62 -0.4
4,571,016 + Psyr_3834 0.70 +2.3
4,571,016 + Psyr_3834 0.70 +0.2
4,571,016 + Psyr_3834 0.70 +1.1
4,571,016 + Psyr_3834 0.70 +0.8
4,571,017 - Psyr_3834 0.70 -2.2
4,571,017 - Psyr_3834 0.70 +3.6
4,571,017 - Psyr_3834 0.70 +0.8
4,571,203 - Psyr_3834 0.81 +1.0
4,571,203 - Psyr_3834 0.81 -0.5
4,571,203 - Psyr_3834 0.81 +1.7
4,571,273 + Psyr_3834 0.85 +2.5
4,571,273 + Psyr_3834 0.85 +0.6
4,571,273 + Psyr_3834 0.85 -0.4
4,571,273 + Psyr_3834 0.85 -1.7
4,571,273 + Psyr_3834 0.85 +1.3
4,571,274 - Psyr_3834 0.85 +3.2
4,571,274 - Psyr_3834 0.85 +0.7
4,571,274 - Psyr_3834 0.85 -1.6
4,571,320 + Psyr_3834 0.88 +2.7
4,571,320 + Psyr_3834 0.88 -2.2
4,571,321 - Psyr_3834 0.88 +0.1
4,571,321 - Psyr_3834 0.88 +1.1
4,571,361 + -0.4
4,571,361 + +0.5
4,571,361 + +3.0
4,571,362 - +0.7
4,571,362 - -0.0
4,571,373 + -2.8
4,571,373 + +4.9
4,571,373 + +0.2
4,571,373 + +2.0
4,571,374 - +1.0
4,571,374 - +1.7
4,571,374 - +2.1
4,571,519 - +1.0
4,571,519 - +1.8
4,571,597 + +0.4
4,571,597 + +1.5
4,571,598 - -2.2
4,571,598 - -1.3
4,571,604 + +0.2
4,571,622 + Psyr_3835 0.16 +1.6
4,571,623 - Psyr_3835 0.17 -0.2
4,571,650 + Psyr_3835 0.33 +0.2
4,571,744 - -2.7
4,571,798 + +0.2
4,571,858 + -1.0
4,571,859 - -0.2
4,572,089 + Psyr_3836 0.12 -3.1
4,572,428 + Psyr_3836 0.32 -0.0

Or see this region's nucleotide sequence