Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3600

Experiment: KB with Plumbagin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3599 and Psyr_3600 are separated by 65 nucleotidesPsyr_3600 and Psyr_3601 are separated by 138 nucleotidesPsyr_3601 and Psyr_3602 overlap by 4 nucleotides Psyr_3599: Psyr_3599 - Alkanesulfonate monooxygenase, at 4,280,192 to 4,281,280 _3599 Psyr_3600: Psyr_3600 - transcriptional regulator, LysR family, at 4,281,346 to 4,282,314 _3600 Psyr_3601: Psyr_3601 - conserved hypothetical protein, at 4,282,453 to 4,283,064 _3601 Psyr_3602: Psyr_3602 - Rhodanese-like protein, at 4,283,061 to 4,284,644 _3602 Position (kb) 4281 4282 4283Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4280.440 kb on + strand, within Psyr_3599at 4280.446 kb on - strand, within Psyr_3599at 4280.503 kb on + strand, within Psyr_3599at 4280.504 kb on - strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.649 kb on - strand, within Psyr_3599at 4280.649 kb on - strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.701 kb on + strand, within Psyr_3599at 4280.701 kb on + strand, within Psyr_3599at 4280.701 kb on + strand, within Psyr_3599at 4280.711 kb on + strand, within Psyr_3599at 4280.711 kb on + strand, within Psyr_3599at 4280.712 kb on - strand, within Psyr_3599at 4280.768 kb on + strand, within Psyr_3599at 4280.768 kb on + strand, within Psyr_3599at 4280.769 kb on - strand, within Psyr_3599at 4280.769 kb on - strand, within Psyr_3599at 4280.769 kb on - strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.923 kb on + strand, within Psyr_3599at 4280.924 kb on - strandat 4280.924 kb on - strand, within Psyr_3599at 4280.967 kb on + strand, within Psyr_3599at 4280.967 kb on + strand, within Psyr_3599at 4280.968 kb on - strand, within Psyr_3599at 4281.140 kb on + strand, within Psyr_3599at 4281.140 kb on + strand, within Psyr_3599at 4281.140 kb on + strand, within Psyr_3599at 4281.141 kb on - strand, within Psyr_3599at 4281.155 kb on - strand, within Psyr_3599at 4281.283 kb on - strandat 4281.796 kb on + strand, within Psyr_3600at 4281.796 kb on + strand, within Psyr_3600at 4281.797 kb on - strand, within Psyr_3600at 4281.797 kb on - strand, within Psyr_3600at 4282.098 kb on + strand, within Psyr_3600at 4282.236 kb on + strandat 4282.237 kb on - strandat 4282.277 kb on - strandat 4282.295 kb on + strandat 4282.316 kb on - strandat 4282.357 kb on - strandat 4282.357 kb on - strandat 4282.401 kb on + strandat 4282.619 kb on + strand, within Psyr_3601at 4282.969 kb on + strand, within Psyr_3601at 4283.260 kb on - strand, within Psyr_3602

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
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4,280,440 + Psyr_3599 0.23 -3.4
4,280,446 - Psyr_3599 0.23 -0.4
4,280,503 + Psyr_3599 0.29 +0.1
4,280,504 - Psyr_3599 0.29 +0.9
4,280,648 + Psyr_3599 0.42 -2.5
4,280,648 + Psyr_3599 0.42 -3.3
4,280,648 + Psyr_3599 0.42 -0.7
4,280,648 + Psyr_3599 0.42 +3.0
4,280,648 + Psyr_3599 0.42 -1.0
4,280,649 - Psyr_3599 0.42 +1.5
4,280,649 - Psyr_3599 0.42 -0.4
4,280,651 + Psyr_3599 0.42 -0.1
4,280,651 + Psyr_3599 0.42 -0.9
4,280,651 + Psyr_3599 0.42 -0.6
4,280,651 + Psyr_3599 0.42 +0.9
4,280,701 + Psyr_3599 0.47 +0.2
4,280,701 + Psyr_3599 0.47 -1.4
4,280,701 + Psyr_3599 0.47 -1.6
4,280,711 + Psyr_3599 0.48 +0.7
4,280,711 + Psyr_3599 0.48 +2.0
4,280,712 - Psyr_3599 0.48 +2.8
4,280,768 + Psyr_3599 0.53 -0.5
4,280,768 + Psyr_3599 0.53 +0.2
4,280,769 - Psyr_3599 0.53 +0.7
4,280,769 - Psyr_3599 0.53 -1.0
4,280,769 - Psyr_3599 0.53 -1.4
4,280,789 + Psyr_3599 0.55 +0.6
4,280,789 + Psyr_3599 0.55 +0.2
4,280,789 + Psyr_3599 0.55 +1.0
4,280,789 + Psyr_3599 0.55 -1.3
4,280,789 + Psyr_3599 0.55 +0.5
4,280,789 + Psyr_3599 0.55 +0.6
4,280,790 - Psyr_3599 0.55 +0.3
4,280,790 - Psyr_3599 0.55 +1.0
4,280,790 - Psyr_3599 0.55 +0.2
4,280,790 - Psyr_3599 0.55 -1.8
4,280,923 + Psyr_3599 0.67 +1.6
4,280,924 - +3.8
4,280,924 - Psyr_3599 0.67 +0.4
4,280,967 + Psyr_3599 0.71 +1.7
4,280,967 + Psyr_3599 0.71 +0.2
4,280,968 - Psyr_3599 0.71 -0.0
4,281,140 + Psyr_3599 0.87 -0.5
4,281,140 + Psyr_3599 0.87 -1.5
4,281,140 + Psyr_3599 0.87 -0.1
4,281,141 - Psyr_3599 0.87 +2.1
4,281,155 - Psyr_3599 0.88 -1.0
4,281,283 - +0.7
4,281,796 + Psyr_3600 0.46 -1.3
4,281,796 + Psyr_3600 0.46 -2.9
4,281,797 - Psyr_3600 0.47 -2.7
4,281,797 - Psyr_3600 0.47 -1.0
4,282,098 + Psyr_3600 0.78 +2.0
4,282,236 + -1.2
4,282,237 - -0.2
4,282,277 - -1.8
4,282,295 + -1.0
4,282,316 - +0.2
4,282,357 - -0.0
4,282,357 - +1.2
4,282,401 + +0.1
4,282,619 + Psyr_3601 0.27 -0.1
4,282,969 + Psyr_3601 0.84 -0.2
4,283,260 - Psyr_3602 0.13 +1.0

Or see this region's nucleotide sequence