Experiment: KB with Plumbagin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2912 and Psyr_2913 are separated by 310 nucleotides Psyr_2913 and Psyr_2914 are separated by 240 nucleotides
Psyr_2912: Psyr_2912 - Zinc-containing alcohol dehydrogenase superfamily, at 3,495,306 to 3,496,328
_2912
Psyr_2913: Psyr_2913 - transcriptional regulator, LysR family, at 3,496,639 to 3,497,553
_2913
Psyr_2914: Psyr_2914 - ATP-dependent DNA helicase RecQ, at 3,497,794 to 3,502,215
_2914
Position (kb)
3496
3497
3498 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3495.704 kb on - strand, within Psyr_2912 at 3495.776 kb on - strand, within Psyr_2912 at 3496.404 kb on - strand at 3496.407 kb on - strand at 3496.483 kb on + strand at 3496.552 kb on + strand at 3496.586 kb on - strand at 3496.588 kb on + strand at 3496.631 kb on + strand at 3496.631 kb on + strand at 3496.631 kb on + strand at 3496.632 kb on - strand at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.050 kb on + strand, within Psyr_2913 at 3497.051 kb on - strand, within Psyr_2913 at 3497.051 kb on - strand, within Psyr_2913 at 3497.051 kb on - strand, within Psyr_2913 at 3497.051 kb on - strand, within Psyr_2913 at 3497.105 kb on - strand, within Psyr_2913 at 3497.342 kb on + strand, within Psyr_2913 at 3497.343 kb on - strand, within Psyr_2913 at 3497.575 kb on - strand at 3497.582 kb on + strand at 3497.599 kb on - strand at 3497.616 kb on + strand at 3497.617 kb on - strand at 3497.664 kb on + strand at 3497.684 kb on - strand at 3497.684 kb on - strand at 3497.684 kb on - strand at 3497.684 kb on - strand at 3497.687 kb on + strand at 3497.688 kb on - strand at 3497.736 kb on + strand at 3497.795 kb on + strand at 3497.796 kb on - strand at 3497.796 kb on - strand at 3497.800 kb on - strand at 3497.810 kb on - strand at 3497.839 kb on + strand at 3497.839 kb on + strand at 3497.864 kb on + strand at 3497.865 kb on - strand at 3497.944 kb on + strand at 3497.979 kb on - strand at 3498.002 kb on + strand at 3498.003 kb on - strand at 3498.003 kb on - strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.006 kb on + strand at 3498.007 kb on - strand at 3498.007 kb on - strand at 3498.007 kb on - strand at 3498.058 kb on + strand at 3498.059 kb on - strand at 3498.059 kb on - strand at 3498.067 kb on + strand at 3498.067 kb on + strand at 3498.067 kb on + strand at 3498.068 kb on - strand at 3498.098 kb on + strand at 3498.098 kb on + strand at 3498.130 kb on + strand at 3498.131 kb on - strand at 3498.131 kb on - strand at 3498.131 kb on - strand at 3498.135 kb on - strand at 3498.135 kb on - strand at 3498.158 kb on + strand at 3498.159 kb on - strand at 3498.159 kb on - strand at 3498.272 kb on + strand, within Psyr_2914 at 3498.272 kb on + strand, within Psyr_2914 at 3498.273 kb on - strand, within Psyr_2914 at 3498.273 kb on - strand, within Psyr_2914 at 3498.276 kb on - strand, within Psyr_2914 at 3498.338 kb on - strand, within Psyr_2914 at 3498.383 kb on + strand, within Psyr_2914 at 3498.384 kb on - strand, within Psyr_2914 at 3498.397 kb on - strand, within Psyr_2914 at 3498.397 kb on - strand, within Psyr_2914 at 3498.422 kb on + strand, within Psyr_2914 at 3498.422 kb on + strand, within Psyr_2914 at 3498.422 kb on + strand, within Psyr_2914 at 3498.423 kb on - strand, within Psyr_2914 at 3498.429 kb on - strand, within Psyr_2914 at 3498.515 kb on + strand, within Psyr_2914 at 3498.516 kb on - strand, within Psyr_2914 at 3498.516 kb on - strand, within Psyr_2914 at 3498.540 kb on + strand, within Psyr_2914 at 3498.541 kb on - strand, within Psyr_2914 at 3498.541 kb on - strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.544 kb on + strand, within Psyr_2914 at 3498.545 kb on - strand, within Psyr_2914 at 3498.545 kb on - strand, within Psyr_2914 at 3498.545 kb on - strand, within Psyr_2914 at 3498.545 kb on - strand, within Psyr_2914 at 3498.545 kb on - strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.548 kb on + strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914 at 3498.549 kb on - strand, within Psyr_2914
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM remove 3,495,704 - Psyr_2912 0.39 +3.5 3,495,776 - Psyr_2912 0.46 +3.2 3,496,404 - -0.8 3,496,407 - +1.1 3,496,483 + -0.7 3,496,552 + -0.9 3,496,586 - -1.8 3,496,588 + +2.8 3,496,631 + +2.6 3,496,631 + +0.4 3,496,631 + -1.0 3,496,632 - -2.0 3,497,050 + Psyr_2913 0.45 -1.3 3,497,050 + Psyr_2913 0.45 -0.7 3,497,050 + Psyr_2913 0.45 -2.4 3,497,050 + Psyr_2913 0.45 -0.5 3,497,050 + Psyr_2913 0.45 -2.2 3,497,050 + Psyr_2913 0.45 -1.3 3,497,050 + Psyr_2913 0.45 -1.7 3,497,050 + Psyr_2913 0.45 -1.9 3,497,050 + Psyr_2913 0.45 -2.0 3,497,050 + Psyr_2913 0.45 -3.5 3,497,050 + Psyr_2913 0.45 -0.9 3,497,050 + Psyr_2913 0.45 +0.7 3,497,050 + Psyr_2913 0.45 -1.3 3,497,050 + Psyr_2913 0.45 -2.3 3,497,051 - Psyr_2913 0.45 -2.8 3,497,051 - Psyr_2913 0.45 -3.0 3,497,051 - Psyr_2913 0.45 -2.4 3,497,051 - Psyr_2913 0.45 -2.8 3,497,105 - Psyr_2913 0.51 -2.2 3,497,342 + Psyr_2913 0.77 -1.9 3,497,343 - Psyr_2913 0.77 +0.3 3,497,575 - -1.4 3,497,582 + +0.7 3,497,599 - -1.1 3,497,616 + +0.5 3,497,617 - -1.1 3,497,664 + -1.1 3,497,684 - +3.6 3,497,684 - -0.1 3,497,684 - +1.3 3,497,684 - +0.6 3,497,687 + -1.4 3,497,688 - -1.0 3,497,736 + +0.5 3,497,795 + -0.7 3,497,796 - -0.8 3,497,796 - -0.6 3,497,800 - +1.3 3,497,810 - -0.6 3,497,839 + -0.8 3,497,839 + +1.1 3,497,864 + -0.4 3,497,865 - -0.0 3,497,944 + +0.1 3,497,979 - +2.1 3,498,002 + +1.1 3,498,003 - -0.1 3,498,003 - -2.4 3,498,006 + -2.4 3,498,006 + +1.9 3,498,006 + +0.8 3,498,006 + -0.1 3,498,006 + +2.9 3,498,006 + -2.0 3,498,006 + +0.5 3,498,006 + +0.4 3,498,006 + -0.5 3,498,007 - -0.5 3,498,007 - -1.6 3,498,007 - +1.9 3,498,058 + -1.3 3,498,059 - +0.4 3,498,059 - +0.4 3,498,067 + -0.1 3,498,067 + -0.2 3,498,067 + +0.7 3,498,068 - -0.3 3,498,098 + -0.5 3,498,098 + -0.3 3,498,130 + +1.3 3,498,131 - +0.0 3,498,131 - -2.9 3,498,131 - +0.4 3,498,135 - -1.3 3,498,135 - +0.4 3,498,158 + +0.0 3,498,159 - +0.2 3,498,159 - +0.7 3,498,272 + Psyr_2914 0.11 -3.0 3,498,272 + Psyr_2914 0.11 -0.0 3,498,273 - Psyr_2914 0.11 -0.5 3,498,273 - Psyr_2914 0.11 -1.6 3,498,276 - Psyr_2914 0.11 -1.7 3,498,338 - Psyr_2914 0.12 -0.3 3,498,383 + Psyr_2914 0.13 -1.2 3,498,384 - Psyr_2914 0.13 -1.2 3,498,397 - Psyr_2914 0.14 -1.2 3,498,397 - Psyr_2914 0.14 +1.6 3,498,422 + Psyr_2914 0.14 -0.3 3,498,422 + Psyr_2914 0.14 +1.9 3,498,422 + Psyr_2914 0.14 -1.0 3,498,423 - Psyr_2914 0.14 -1.3 3,498,429 - Psyr_2914 0.14 -1.4 3,498,515 + Psyr_2914 0.16 +0.2 3,498,516 - Psyr_2914 0.16 -2.2 3,498,516 - Psyr_2914 0.16 -2.0 3,498,540 + Psyr_2914 0.17 -1.0 3,498,541 - Psyr_2914 0.17 -1.0 3,498,541 - Psyr_2914 0.17 -1.0 3,498,544 + Psyr_2914 0.17 +0.3 3,498,544 + Psyr_2914 0.17 +0.4 3,498,544 + Psyr_2914 0.17 +0.2 3,498,544 + Psyr_2914 0.17 +0.1 3,498,544 + Psyr_2914 0.17 +2.3 3,498,544 + Psyr_2914 0.17 +0.7 3,498,544 + Psyr_2914 0.17 -0.4 3,498,544 + Psyr_2914 0.17 +0.3 3,498,544 + Psyr_2914 0.17 +0.8 3,498,545 - Psyr_2914 0.17 -0.5 3,498,545 - Psyr_2914 0.17 -0.8 3,498,545 - Psyr_2914 0.17 -2.4 3,498,545 - Psyr_2914 0.17 -0.3 3,498,545 - Psyr_2914 0.17 +0.6 3,498,548 + Psyr_2914 0.17 -0.6 3,498,548 + Psyr_2914 0.17 +0.1 3,498,548 + Psyr_2914 0.17 +0.2 3,498,548 + Psyr_2914 0.17 +0.2 3,498,548 + Psyr_2914 0.17 -0.7 3,498,548 + Psyr_2914 0.17 +1.2 3,498,548 + Psyr_2914 0.17 -2.3 3,498,548 + Psyr_2914 0.17 +1.3 3,498,548 + Psyr_2914 0.17 +0.1 3,498,549 - Psyr_2914 0.17 -1.9 3,498,549 - Psyr_2914 0.17 -1.7 3,498,549 - Psyr_2914 0.17 +0.1 3,498,549 - Psyr_2914 0.17 -0.7 3,498,549 - Psyr_2914 0.17 -1.5 3,498,549 - Psyr_2914 0.17 +1.7 3,498,549 - Psyr_2914 0.17 +0.8 3,498,549 - Psyr_2914 0.17 -1.5 3,498,549 - Psyr_2914 0.17 -1.2
Or see this region's nucleotide sequence