Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1724

Experiment: KB with Plumbagin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1722 and Psyr_1723 are separated by 47 nucleotidesPsyr_1723 and Psyr_1724 are separated by 367 nucleotidesPsyr_1724 and Psyr_1725 are separated by 86 nucleotidesPsyr_1725 and Psyr_1726 are separated by 314 nucleotides Psyr_1722: Psyr_1722 - Amidohydrolase 2, at 1,951,605 to 1,952,351 _1722 Psyr_1723: Psyr_1723 - conserved hypothetical protein, at 1,952,399 to 1,952,758 _1723 Psyr_1724: Psyr_1724 - glutamate dehydrogenase (NAD), at 1,953,126 to 1,957,982 _1724 Psyr_1725: Psyr_1725 - Protein of unknown function DUF204, at 1,958,069 to 1,958,605 _1725 Psyr_1726: Psyr_1726 - aconitase, at 1,958,920 to 1,961,535 _1726 Position (kb) 1953 1954 1955 1956 1957 1958Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1952.174 kb on - strand, within Psyr_1722at 1952.251 kb on + strand, within Psyr_1722at 1952.418 kb on + strandat 1952.419 kb on - strandat 1952.419 kb on - strandat 1952.448 kb on - strandat 1952.709 kb on + strand, within Psyr_1723at 1952.818 kb on + strandat 1952.818 kb on + strandat 1952.818 kb on + strandat 1952.844 kb on + strandat 1952.845 kb on - strandat 1952.854 kb on - strandat 1952.874 kb on + strandat 1952.874 kb on + strandat 1952.875 kb on - strandat 1952.875 kb on - strandat 1952.875 kb on - strandat 1952.875 kb on - strandat 1952.939 kb on + strandat 1952.939 kb on + strandat 1952.978 kb on + strandat 1952.978 kb on + strandat 1952.978 kb on + strandat 1952.979 kb on - strandat 1952.979 kb on - strandat 1952.979 kb on - strandat 1952.979 kb on - strandat 1953.013 kb on + strandat 1953.013 kb on + strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.014 kb on - strandat 1953.018 kb on + strandat 1953.018 kb on + strandat 1953.018 kb on + strandat 1953.018 kb on + strandat 1953.019 kb on - strandat 1953.019 kb on - strandat 1953.024 kb on + strandat 1953.024 kb on + strandat 1953.102 kb on - strandat 1953.119 kb on - strandat 1953.363 kb on + strandat 1953.376 kb on - strandat 1953.404 kb on + strandat 1953.405 kb on - strandat 1953.405 kb on - strandat 1953.405 kb on - strandat 1953.600 kb on + strandat 1953.601 kb on - strandat 1953.601 kb on - strandat 1953.601 kb on - strandat 1953.601 kb on - strandat 1953.601 kb on - strandat 1953.601 kb on - strandat 1953.601 kb on - strandat 1953.680 kb on - strand, within Psyr_1724at 1953.885 kb on + strand, within Psyr_1724at 1953.975 kb on + strand, within Psyr_1724at 1953.975 kb on + strand, within Psyr_1724at 1953.975 kb on + strand, within Psyr_1724at 1953.975 kb on + strand, within Psyr_1724at 1953.976 kb on - strand, within Psyr_1724at 1954.054 kb on - strand, within Psyr_1724at 1954.119 kb on + strand, within Psyr_1724at 1954.119 kb on + strand, within Psyr_1724at 1954.120 kb on - strand, within Psyr_1724at 1954.120 kb on - strand, within Psyr_1724at 1954.134 kb on + strand, within Psyr_1724at 1954.161 kb on + strand, within Psyr_1724at 1954.395 kb on + strand, within Psyr_1724at 1954.395 kb on + strand, within Psyr_1724at 1954.395 kb on + strand, within Psyr_1724at 1954.395 kb on + strand, within Psyr_1724at 1954.395 kb on + strand, within Psyr_1724at 1954.396 kb on - strand, within Psyr_1724at 1954.396 kb on - strand, within Psyr_1724at 1954.396 kb on - strand, within Psyr_1724at 1954.396 kb on - strand, within Psyr_1724at 1954.396 kb on - strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.411 kb on + strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.412 kb on - strand, within Psyr_1724at 1954.413 kb on + strand, within Psyr_1724at 1954.413 kb on + strand, within Psyr_1724at 1954.426 kb on + strand, within Psyr_1724at 1954.426 kb on + strand, within Psyr_1724at 1954.427 kb on - strand, within Psyr_1724at 1954.795 kb on - strand, within Psyr_1724at 1954.839 kb on + strand, within Psyr_1724at 1954.839 kb on + strand, within Psyr_1724at 1954.980 kb on + strand, within Psyr_1724at 1955.090 kb on - strand, within Psyr_1724at 1955.136 kb on + strand, within Psyr_1724at 1955.181 kb on + strand, within Psyr_1724at 1955.181 kb on + strand, within Psyr_1724at 1955.254 kb on - strand, within Psyr_1724at 1955.374 kb on - strand, within Psyr_1724at 1955.374 kb on - strand, within Psyr_1724at 1955.445 kb on + strand, within Psyr_1724at 1955.446 kb on - strand, within Psyr_1724at 1955.446 kb on - strand, within Psyr_1724at 1955.446 kb on - strand, within Psyr_1724at 1956.255 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.438 kb on + strand, within Psyr_1724at 1956.439 kb on - strand, within Psyr_1724at 1956.439 kb on - strand, within Psyr_1724at 1956.774 kb on + strand, within Psyr_1724at 1956.774 kb on + strand, within Psyr_1724at 1956.775 kb on - strand, within Psyr_1724at 1956.775 kb on - strand, within Psyr_1724at 1956.775 kb on - strand, within Psyr_1724at 1956.817 kb on - strand, within Psyr_1724at 1956.817 kb on - strand, within Psyr_1724at 1956.975 kb on + strand, within Psyr_1724at 1956.976 kb on - strand, within Psyr_1724at 1957.293 kb on + strand, within Psyr_1724at 1957.294 kb on - strand, within Psyr_1724at 1957.509 kb on + strandat 1957.510 kb on - strandat 1957.510 kb on - strandat 1957.510 kb on - strandat 1957.557 kb on - strandat 1957.569 kb on + strandat 1957.569 kb on + strandat 1957.570 kb on - strandat 1957.570 kb on - strandat 1957.570 kb on - strandat 1957.570 kb on - strandat 1957.570 kb on - strandat 1957.571 kb on + strandat 1957.571 kb on + strandat 1957.572 kb on - strandat 1957.572 kb on - strandat 1957.638 kb on + strandat 1957.638 kb on + strandat 1957.638 kb on + strandat 1957.667 kb on + strandat 1957.920 kb on + strandat 1957.920 kb on + strandat 1957.920 kb on + strandat 1957.920 kb on + strandat 1957.920 kb on + strandat 1957.920 kb on + strandat 1957.920 kb on + strandat 1957.920 kb on + strandat 1957.921 kb on - strandat 1957.921 kb on - strandat 1957.921 kb on - strandat 1957.921 kb on - strandat 1957.921 kb on - strandat 1957.921 kb on - strandat 1957.921 kb on - strandat 1957.981 kb on - strandat 1957.992 kb on - strandat 1957.992 kb on - strandat 1958.006 kb on + strandat 1958.052 kb on + strandat 1958.052 kb on + strandat 1958.052 kb on + strandat 1958.052 kb on + strandat 1958.246 kb on - strand, within Psyr_1725at 1958.270 kb on + strand, within Psyr_1725at 1958.386 kb on - strand, within Psyr_1725at 1958.517 kb on - strand, within Psyr_1725at 1958.517 kb on - strand, within Psyr_1725at 1958.517 kb on - strand, within Psyr_1725at 1958.554 kb on + strandat 1958.554 kb on + strandat 1958.555 kb on - strandat 1958.645 kb on + strandat 1958.646 kb on - strandat 1958.647 kb on + strandat 1958.822 kb on + strandat 1958.822 kb on + strandat 1958.823 kb on - strandat 1958.823 kb on - strandat 1958.824 kb on + strandat 1958.825 kb on - strandat 1958.845 kb on + strandat 1958.845 kb on + strandat 1958.845 kb on + strandat 1958.845 kb on + strandat 1958.845 kb on + strandat 1958.846 kb on - strandat 1958.846 kb on - strandat 1958.846 kb on - strandat 1958.846 kb on - strandat 1958.847 kb on + strandat 1958.847 kb on + strandat 1958.847 kb on + strandat 1958.848 kb on - strandat 1958.851 kb on + strandat 1958.851 kb on + strandat 1958.851 kb on + strandat 1958.852 kb on - strandat 1958.852 kb on - strandat 1958.852 kb on - strandat 1958.852 kb on - strandat 1958.917 kb on + strandat 1958.918 kb on - strandat 1958.921 kb on + strandat 1958.921 kb on + strandat 1958.922 kb on - strandat 1958.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
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1,952,174 - Psyr_1722 0.76 -1.7
1,952,251 + Psyr_1722 0.86 -0.5
1,952,418 + -0.2
1,952,419 - -0.0
1,952,419 - -1.0
1,952,448 - -1.5
1,952,709 + Psyr_1723 0.86 +2.2
1,952,818 + -1.1
1,952,818 + +0.1
1,952,818 + -1.0
1,952,844 + -1.2
1,952,845 - -1.1
1,952,854 - +0.3
1,952,874 + +0.7
1,952,874 + -3.3
1,952,875 - +0.6
1,952,875 - -2.0
1,952,875 - -0.1
1,952,875 - -2.3
1,952,939 + -2.0
1,952,939 + -0.1
1,952,978 + +0.1
1,952,978 + +0.5
1,952,978 + +2.7
1,952,979 - -1.4
1,952,979 - -2.6
1,952,979 - -2.6
1,952,979 - -0.9
1,953,013 + +0.2
1,953,013 + +1.8
1,953,014 - -1.2
1,953,014 - -0.1
1,953,014 - +1.1
1,953,014 - -2.6
1,953,014 - +0.1
1,953,018 + -0.7
1,953,018 + -0.5
1,953,018 + -0.5
1,953,018 + -0.3
1,953,019 - -0.1
1,953,019 - -4.1
1,953,024 + -0.7
1,953,024 + +0.7
1,953,102 - -2.8
1,953,119 - +1.1
1,953,363 + -0.3
1,953,376 - -0.5
1,953,404 + -2.9
1,953,405 - -0.7
1,953,405 - -0.8
1,953,405 - -0.1
1,953,600 + +0.8
1,953,601 - -1.6
1,953,601 - -1.7
1,953,601 - +1.1
1,953,601 - -2.5
1,953,601 - -1.3
1,953,601 - -2.6
1,953,601 - +1.1
1,953,680 - Psyr_1724 0.11 +0.7
1,953,885 + Psyr_1724 0.16 -3.8
1,953,975 + Psyr_1724 0.17 +0.1
1,953,975 + Psyr_1724 0.17 -1.5
1,953,975 + Psyr_1724 0.17 -0.1
1,953,975 + Psyr_1724 0.17 -1.4
1,953,976 - Psyr_1724 0.18 -1.9
1,954,054 - Psyr_1724 0.19 +0.2
1,954,119 + Psyr_1724 0.20 -3.6
1,954,119 + Psyr_1724 0.20 -1.1
1,954,120 - Psyr_1724 0.20 -2.1
1,954,120 - Psyr_1724 0.20 -0.1
1,954,134 + Psyr_1724 0.21 +0.1
1,954,161 + Psyr_1724 0.21 -1.5
1,954,395 + Psyr_1724 0.26 +1.1
1,954,395 + Psyr_1724 0.26 +1.1
1,954,395 + Psyr_1724 0.26 -2.5
1,954,395 + Psyr_1724 0.26 -1.2
1,954,395 + Psyr_1724 0.26 -1.1
1,954,396 - Psyr_1724 0.26 -0.8
1,954,396 - Psyr_1724 0.26 -2.7
1,954,396 - Psyr_1724 0.26 -0.9
1,954,396 - Psyr_1724 0.26 -0.1
1,954,396 - Psyr_1724 0.26 +2.1
1,954,411 + Psyr_1724 0.26 -3.3
1,954,411 + Psyr_1724 0.26 +0.6
1,954,411 + Psyr_1724 0.26 -0.2
1,954,411 + Psyr_1724 0.26 -1.4
1,954,411 + Psyr_1724 0.26 -4.0
1,954,411 + Psyr_1724 0.26 -1.4
1,954,411 + Psyr_1724 0.26 -1.8
1,954,411 + Psyr_1724 0.26 -0.0
1,954,411 + Psyr_1724 0.26 -4.1
1,954,412 - Psyr_1724 0.26 +1.9
1,954,412 - Psyr_1724 0.26 +3.3
1,954,412 - Psyr_1724 0.26 -4.6
1,954,412 - Psyr_1724 0.26 -0.7
1,954,412 - Psyr_1724 0.26 -0.5
1,954,412 - Psyr_1724 0.26 -1.7
1,954,412 - Psyr_1724 0.26 +0.5
1,954,412 - Psyr_1724 0.26 -2.1
1,954,412 - Psyr_1724 0.26 -2.3
1,954,413 + Psyr_1724 0.26 -1.2
1,954,413 + Psyr_1724 0.26 +0.3
1,954,426 + Psyr_1724 0.27 +0.5
1,954,426 + Psyr_1724 0.27 -2.1
1,954,427 - Psyr_1724 0.27 +0.1
1,954,795 - Psyr_1724 0.34 -2.4
1,954,839 + Psyr_1724 0.35 -2.6
1,954,839 + Psyr_1724 0.35 -2.2
1,954,980 + Psyr_1724 0.38 -1.1
1,955,090 - Psyr_1724 0.40 +0.1
1,955,136 + Psyr_1724 0.41 -3.0
1,955,181 + Psyr_1724 0.42 -0.3
1,955,181 + Psyr_1724 0.42 -0.6
1,955,254 - Psyr_1724 0.44 -1.5
1,955,374 - Psyr_1724 0.46 -0.8
1,955,374 - Psyr_1724 0.46 -3.7
1,955,445 + Psyr_1724 0.48 -0.4
1,955,446 - Psyr_1724 0.48 -2.2
1,955,446 - Psyr_1724 0.48 -2.5
1,955,446 - Psyr_1724 0.48 -2.8
1,956,255 + Psyr_1724 0.64 +0.0
1,956,438 + Psyr_1724 0.68 -2.2
1,956,438 + Psyr_1724 0.68 -0.2
1,956,438 + Psyr_1724 0.68 -1.7
1,956,438 + Psyr_1724 0.68 -3.1
1,956,438 + Psyr_1724 0.68 -0.5
1,956,438 + Psyr_1724 0.68 -1.1
1,956,438 + Psyr_1724 0.68 -2.0
1,956,438 + Psyr_1724 0.68 -1.3
1,956,438 + Psyr_1724 0.68 -0.8
1,956,439 - Psyr_1724 0.68 -3.3
1,956,439 - Psyr_1724 0.68 +0.9
1,956,774 + Psyr_1724 0.75 -0.9
1,956,774 + Psyr_1724 0.75 -0.6
1,956,775 - Psyr_1724 0.75 -3.3
1,956,775 - Psyr_1724 0.75 +0.6
1,956,775 - Psyr_1724 0.75 +1.6
1,956,817 - Psyr_1724 0.76 -1.9
1,956,817 - Psyr_1724 0.76 -1.2
1,956,975 + Psyr_1724 0.79 -4.6
1,956,976 - Psyr_1724 0.79 +1.5
1,957,293 + Psyr_1724 0.86 -1.4
1,957,294 - Psyr_1724 0.86 -2.2
1,957,509 + -0.2
1,957,510 - -0.9
1,957,510 - -0.1
1,957,510 - -0.5
1,957,557 - -2.5
1,957,569 + -1.8
1,957,569 + -0.5
1,957,570 - -1.9
1,957,570 - -0.4
1,957,570 - -1.2
1,957,570 - -1.6
1,957,570 - -2.4
1,957,571 + -2.1
1,957,571 + -2.4
1,957,572 - +1.1
1,957,572 - -0.7
1,957,638 + -1.2
1,957,638 + +0.1
1,957,638 + +2.1
1,957,667 + -1.9
1,957,920 + -2.1
1,957,920 + -1.7
1,957,920 + -1.5
1,957,920 + +3.7
1,957,920 + +1.5
1,957,920 + -1.3
1,957,920 + +1.2
1,957,920 + +0.8
1,957,921 - -0.0
1,957,921 - -0.9
1,957,921 - +2.1
1,957,921 - +0.1
1,957,921 - +0.0
1,957,921 - -0.9
1,957,921 - +0.6
1,957,981 - -2.5
1,957,992 - -2.5
1,957,992 - +0.3
1,958,006 + +0.7
1,958,052 + -2.2
1,958,052 + +0.4
1,958,052 + -0.0
1,958,052 + -0.9
1,958,246 - Psyr_1725 0.33 -2.3
1,958,270 + Psyr_1725 0.37 -0.5
1,958,386 - Psyr_1725 0.59 +0.2
1,958,517 - Psyr_1725 0.83 -2.3
1,958,517 - Psyr_1725 0.83 -2.2
1,958,517 - Psyr_1725 0.83 +0.6
1,958,554 + -0.4
1,958,554 + +0.9
1,958,555 - -0.2
1,958,645 + -0.7
1,958,646 - +0.3
1,958,647 + +0.4
1,958,822 + +0.7
1,958,822 + -0.2
1,958,823 - -0.3
1,958,823 - +0.1
1,958,824 + +0.7
1,958,825 - -0.3
1,958,845 + +0.3
1,958,845 + -1.6
1,958,845 + -0.6
1,958,845 + -0.7
1,958,845 + +0.4
1,958,846 - +1.1
1,958,846 - +0.0
1,958,846 - +0.1
1,958,846 - +0.7
1,958,847 + -2.1
1,958,847 + -1.8
1,958,847 + +1.1
1,958,848 - -1.6
1,958,851 + +2.1
1,958,851 + +2.7
1,958,851 + -0.5
1,958,852 - -1.2
1,958,852 - +0.5
1,958,852 - -1.3
1,958,852 - +1.1
1,958,917 + -3.6
1,958,918 - -1.8
1,958,921 + -2.5
1,958,921 + -1.7
1,958,922 - +0.8
1,958,922 - +1.1

Or see this region's nucleotide sequence