Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1041

Experiment: KB with Plumbagin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1039 and Psyr_1040 overlap by 4 nucleotidesPsyr_1040 and Psyr_1041 are separated by 210 nucleotidesPsyr_1041 and Psyr_1042 are separated by 136 nucleotides Psyr_1039: Psyr_1039 - FecR protein, at 1,174,500 to 1,175,477 _1039 Psyr_1040: Psyr_1040 - RNA polymerase sigma factor, ECF subfamily, at 1,175,474 to 1,175,977 _1040 Psyr_1041: Psyr_1041 - transcriptional regulator, AraC family, at 1,176,188 to 1,177,063 _1041 Psyr_1042: Psyr_1042 - Protein of unknown function DUF6, at 1,177,200 to 1,178,102 _1042 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1175.203 kb on - strand, within Psyr_1039at 1175.478 kb on - strandat 1175.487 kb on + strandat 1175.488 kb on - strandat 1175.488 kb on - strandat 1175.488 kb on - strandat 1175.488 kb on - strandat 1175.488 kb on - strandat 1175.721 kb on + strand, within Psyr_1040at 1175.721 kb on + strand, within Psyr_1040at 1175.721 kb on + strand, within Psyr_1040at 1175.722 kb on - strand, within Psyr_1040at 1175.722 kb on - strand, within Psyr_1040at 1175.724 kb on + strand, within Psyr_1040at 1175.724 kb on + strand, within Psyr_1040at 1175.724 kb on + strand, within Psyr_1040at 1175.725 kb on - strand, within Psyr_1040at 1175.819 kb on - strand, within Psyr_1040at 1175.842 kb on + strand, within Psyr_1040at 1175.931 kb on + strandat 1175.931 kb on + strandat 1175.931 kb on + strandat 1175.931 kb on + strandat 1176.125 kb on - strandat 1176.189 kb on + strandat 1176.189 kb on + strandat 1176.189 kb on + strandat 1176.189 kb on + strandat 1176.189 kb on + strandat 1176.190 kb on - strandat 1176.190 kb on - strandat 1176.210 kb on + strandat 1176.210 kb on + strandat 1176.211 kb on - strandat 1176.211 kb on - strandat 1176.361 kb on - strand, within Psyr_1041at 1176.361 kb on - strand, within Psyr_1041at 1176.492 kb on + strand, within Psyr_1041at 1176.762 kb on + strand, within Psyr_1041at 1176.762 kb on + strand, within Psyr_1041at 1176.762 kb on + strand, within Psyr_1041at 1176.763 kb on - strand, within Psyr_1041at 1176.763 kb on - strand, within Psyr_1041at 1176.763 kb on - strand, within Psyr_1041at 1176.824 kb on + strand, within Psyr_1041at 1176.825 kb on - strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.897 kb on + strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.898 kb on - strand, within Psyr_1041at 1176.910 kb on + strand, within Psyr_1041at 1176.911 kb on - strand, within Psyr_1041at 1176.930 kb on + strand, within Psyr_1041at 1176.931 kb on - strand, within Psyr_1041at 1177.076 kb on - strandat 1177.084 kb on + strandat 1177.085 kb on - strandat 1177.089 kb on + strandat 1177.216 kb on - strandat 1177.343 kb on - strand, within Psyr_1042at 1177.343 kb on - strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.440 kb on + strand, within Psyr_1042at 1177.441 kb on - strand, within Psyr_1042at 1177.441 kb on - strand, within Psyr_1042at 1177.762 kb on - strand, within Psyr_1042at 1177.762 kb on - strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.785 kb on + strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.786 kb on - strand, within Psyr_1042at 1177.812 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.834 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.838 kb on - strand, within Psyr_1042at 1177.890 kb on + strand, within Psyr_1042at 1177.891 kb on - strand, within Psyr_1042at 1177.904 kb on - strand, within Psyr_1042at 1177.933 kb on - strand, within Psyr_1042

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
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1,175,203 - Psyr_1039 0.72 +1.1
1,175,478 - -1.9
1,175,487 + -0.8
1,175,488 - -1.6
1,175,488 - +0.0
1,175,488 - +0.0
1,175,488 - -2.7
1,175,488 - -1.7
1,175,721 + Psyr_1040 0.49 +0.5
1,175,721 + Psyr_1040 0.49 +0.2
1,175,721 + Psyr_1040 0.49 +0.1
1,175,722 - Psyr_1040 0.49 +0.9
1,175,722 - Psyr_1040 0.49 -0.1
1,175,724 + Psyr_1040 0.50 +0.7
1,175,724 + Psyr_1040 0.50 -0.5
1,175,724 + Psyr_1040 0.50 -0.1
1,175,725 - Psyr_1040 0.50 -2.9
1,175,819 - Psyr_1040 0.68 +0.4
1,175,842 + Psyr_1040 0.73 -0.5
1,175,931 + +0.9
1,175,931 + +0.4
1,175,931 + -0.6
1,175,931 + +0.2
1,176,125 - -0.9
1,176,189 + +0.3
1,176,189 + +1.4
1,176,189 + -3.0
1,176,189 + -1.5
1,176,189 + +2.9
1,176,190 - +2.1
1,176,190 - -1.5
1,176,210 + -1.9
1,176,210 + +1.6
1,176,211 - -0.9
1,176,211 - -2.0
1,176,361 - Psyr_1041 0.20 +1.3
1,176,361 - Psyr_1041 0.20 +0.3
1,176,492 + Psyr_1041 0.35 -1.4
1,176,762 + Psyr_1041 0.66 -2.2
1,176,762 + Psyr_1041 0.66 -2.7
1,176,762 + Psyr_1041 0.66 -0.6
1,176,763 - Psyr_1041 0.66 +0.1
1,176,763 - Psyr_1041 0.66 -0.2
1,176,763 - Psyr_1041 0.66 -1.2
1,176,824 + Psyr_1041 0.73 -0.5
1,176,825 - Psyr_1041 0.73 -0.9
1,176,897 + Psyr_1041 0.81 -0.8
1,176,897 + Psyr_1041 0.81 -3.4
1,176,897 + Psyr_1041 0.81 +0.1
1,176,897 + Psyr_1041 0.81 -1.0
1,176,897 + Psyr_1041 0.81 -0.2
1,176,897 + Psyr_1041 0.81 -1.0
1,176,897 + Psyr_1041 0.81 -0.6
1,176,897 + Psyr_1041 0.81 +0.4
1,176,897 + Psyr_1041 0.81 -0.9
1,176,897 + Psyr_1041 0.81 +1.5
1,176,897 + Psyr_1041 0.81 +2.8
1,176,897 + Psyr_1041 0.81 +0.4
1,176,898 - Psyr_1041 0.81 -0.5
1,176,898 - Psyr_1041 0.81 -0.5
1,176,898 - Psyr_1041 0.81 -1.8
1,176,898 - Psyr_1041 0.81 +0.6
1,176,898 - Psyr_1041 0.81 +1.3
1,176,910 + Psyr_1041 0.82 -1.9
1,176,911 - Psyr_1041 0.83 -1.1
1,176,930 + Psyr_1041 0.85 -1.3
1,176,931 - Psyr_1041 0.85 -0.1
1,177,076 - -0.7
1,177,084 + -1.1
1,177,085 - -0.4
1,177,089 + -0.6
1,177,216 - +1.4
1,177,343 - Psyr_1042 0.16 -0.1
1,177,343 - Psyr_1042 0.16 -1.5
1,177,440 + Psyr_1042 0.27 -2.9
1,177,440 + Psyr_1042 0.27 -0.2
1,177,440 + Psyr_1042 0.27 +0.4
1,177,441 - Psyr_1042 0.27 +0.8
1,177,441 - Psyr_1042 0.27 -2.2
1,177,762 - Psyr_1042 0.62 +1.2
1,177,762 - Psyr_1042 0.62 -0.2
1,177,785 + Psyr_1042 0.65 -0.8
1,177,785 + Psyr_1042 0.65 +0.3
1,177,785 + Psyr_1042 0.65 -0.1
1,177,785 + Psyr_1042 0.65 -0.6
1,177,785 + Psyr_1042 0.65 -1.9
1,177,785 + Psyr_1042 0.65 +2.4
1,177,785 + Psyr_1042 0.65 -0.2
1,177,785 + Psyr_1042 0.65 +0.3
1,177,785 + Psyr_1042 0.65 +0.4
1,177,785 + Psyr_1042 0.65 -0.0
1,177,785 + Psyr_1042 0.65 +0.3
1,177,785 + Psyr_1042 0.65 -1.3
1,177,785 + Psyr_1042 0.65 -0.5
1,177,785 + Psyr_1042 0.65 +1.4
1,177,786 - Psyr_1042 0.65 -0.3
1,177,786 - Psyr_1042 0.65 -0.4
1,177,786 - Psyr_1042 0.65 -0.2
1,177,786 - Psyr_1042 0.65 -2.1
1,177,786 - Psyr_1042 0.65 +0.7
1,177,786 - Psyr_1042 0.65 -0.8
1,177,786 - Psyr_1042 0.65 +0.9
1,177,786 - Psyr_1042 0.65 +0.4
1,177,786 - Psyr_1042 0.65 -3.1
1,177,786 - Psyr_1042 0.65 -1.9
1,177,786 - Psyr_1042 0.65 -0.1
1,177,786 - Psyr_1042 0.65 -0.2
1,177,786 - Psyr_1042 0.65 -2.1
1,177,786 - Psyr_1042 0.65 -1.6
1,177,786 - Psyr_1042 0.65 -0.7
1,177,812 - Psyr_1042 0.68 -0.9
1,177,834 - Psyr_1042 0.70 -0.7
1,177,834 - Psyr_1042 0.70 +2.1
1,177,834 - Psyr_1042 0.70 -0.4
1,177,838 - Psyr_1042 0.71 +0.5
1,177,838 - Psyr_1042 0.71 +0.2
1,177,838 - Psyr_1042 0.71 -0.4
1,177,838 - Psyr_1042 0.71 -0.9
1,177,838 - Psyr_1042 0.71 +0.1
1,177,838 - Psyr_1042 0.71 +0.1
1,177,838 - Psyr_1042 0.71 -2.6
1,177,890 + Psyr_1042 0.76 -1.9
1,177,891 - Psyr_1042 0.77 -0.3
1,177,904 - Psyr_1042 0.78 +0.1
1,177,933 - Psyr_1042 0.81 +3.7

Or see this region's nucleotide sequence