Experiment: KB with Plumbagin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1022 and Psyr_1023 are separated by 151 nucleotides Psyr_1023 and Psyr_1024 are separated by 206 nucleotides Psyr_1024 and Psyr_1025 are separated by 111 nucleotides
Psyr_1022: Psyr_1022 - conserved hypothetical protein, at 1,153,512 to 1,154,078
_1022
Psyr_1023: Psyr_1023 - conserved hypothetical protein, at 1,154,230 to 1,154,835
_1023
Psyr_1024: Psyr_1024 - Flavodoxin/nitric oxide synthase, at 1,155,042 to 1,155,494
_1024
Psyr_1025: Psyr_1025 - Short-chain dehydrogenase/reductase SDR, at 1,155,606 to 1,156,517
_1025
Position (kb) 1155
1156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1154.072 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.083 kb on + strand at 1154.083 kb on + strand at 1154.083 kb on + strand at 1154.084 kb on - strand at 1154.084 kb on - strand at 1154.084 kb on - strand at 1154.183 kb on - strand at 1154.231 kb on + strand at 1154.232 kb on - strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.277 kb on - strand at 1154.277 kb on - strand at 1154.277 kb on - strand at 1154.277 kb on - strand at 1154.325 kb on - strand, within Psyr_1023 at 1154.325 kb on - strand, within Psyr_1023 at 1154.376 kb on + strand, within Psyr_1023 at 1154.574 kb on + strand, within Psyr_1023 at 1154.574 kb on + strand, within Psyr_1023 at 1154.749 kb on - strand, within Psyr_1023 at 1154.749 kb on - strand, within Psyr_1023 at 1154.758 kb on + strand, within Psyr_1023 at 1154.758 kb on + strand, within Psyr_1023 at 1154.758 kb on + strand, within Psyr_1023 at 1154.758 kb on + strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.759 kb on - strand, within Psyr_1023 at 1154.998 kb on + strand at 1154.998 kb on + strand at 1154.998 kb on + strand at 1155.005 kb on + strand at 1155.005 kb on + strand at 1155.006 kb on - strand at 1155.156 kb on - strand, within Psyr_1024 at 1155.156 kb on - strand, within Psyr_1024 at 1155.252 kb on + strand, within Psyr_1024 at 1155.483 kb on + strand at 1155.484 kb on - strand at 1155.484 kb on - strand at 1155.511 kb on + strand at 1155.511 kb on + strand at 1155.619 kb on + strand at 1155.619 kb on + strand at 1155.619 kb on + strand at 1155.814 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.987 kb on + strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.988 kb on - strand, within Psyr_1025 at 1155.989 kb on + strand, within Psyr_1025 at 1155.989 kb on + strand, within Psyr_1025 at 1156.015 kb on - strand, within Psyr_1025 at 1156.071 kb on + strand, within Psyr_1025 at 1156.072 kb on - strand, within Psyr_1025 at 1156.072 kb on - strand, within Psyr_1025 at 1156.072 kb on - strand, within Psyr_1025 at 1156.095 kb on + strand, within Psyr_1025 at 1156.095 kb on + strand, within Psyr_1025 at 1156.095 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.275 kb on + strand, within Psyr_1025 at 1156.276 kb on - strand, within Psyr_1025 at 1156.276 kb on - strand, within Psyr_1025 at 1156.276 kb on - strand, within Psyr_1025 at 1156.276 kb on - strand, within Psyr_1025 at 1156.276 kb on - strand, within Psyr_1025
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM remove 1,154,072 + +0.2 1,154,081 + -2.5 1,154,081 + +0.3 1,154,081 + -0.5 1,154,081 + -2.6 1,154,081 + -0.7 1,154,081 + -0.1 1,154,081 + +0.4 1,154,081 + -1.7 1,154,081 + +1.1 1,154,081 + -0.8 1,154,081 + +1.4 1,154,081 + +2.7 1,154,081 + +0.5 1,154,081 + +1.1 1,154,081 + -0.7 1,154,081 + -2.7 1,154,081 + +0.0 1,154,081 + -0.1 1,154,081 + -0.6 1,154,081 + +0.3 1,154,081 + +0.9 1,154,081 + -1.0 1,154,081 + -0.1 1,154,081 + +0.4 1,154,081 + -0.2 1,154,081 + +1.7 1,154,081 + +0.2 1,154,081 + -0.2 1,154,081 + -2.1 1,154,081 + +0.8 1,154,081 + +1.2 1,154,081 + +2.0 1,154,081 + -0.7 1,154,081 + +0.1 1,154,081 + +0.1 1,154,081 + +1.7 1,154,081 + -0.3 1,154,081 + -1.9 1,154,081 + -1.5 1,154,081 + -1.7 1,154,081 + +3.9 1,154,081 + -0.2 1,154,081 + -0.7 1,154,081 + -0.5 1,154,081 + -0.1 1,154,081 + +0.6 1,154,082 - -0.9 1,154,082 - +0.2 1,154,082 - -1.3 1,154,082 - -0.6 1,154,082 - +2.2 1,154,082 - +2.1 1,154,082 - +1.0 1,154,082 - -0.5 1,154,082 - -0.6 1,154,082 - -0.8 1,154,082 - -1.1 1,154,082 - -1.7 1,154,082 - -0.4 1,154,082 - -0.6 1,154,082 - +0.9 1,154,082 - -1.2 1,154,082 - +1.5 1,154,082 - -3.3 1,154,082 - -1.3 1,154,082 - +0.6 1,154,082 - +0.1 1,154,082 - +1.2 1,154,082 - +1.9 1,154,082 - +1.2 1,154,082 - +1.3 1,154,082 - -0.4 1,154,082 - -2.4 1,154,082 - -1.0 1,154,082 - -1.2 1,154,082 - +1.1 1,154,082 - -0.2 1,154,082 - -0.9 1,154,082 - +0.6 1,154,082 - -0.5 1,154,082 - -0.8 1,154,082 - +0.2 1,154,082 - +0.5 1,154,082 - -0.9 1,154,082 - +0.1 1,154,082 - +0.1 1,154,083 + +0.7 1,154,083 + -1.5 1,154,083 + -1.4 1,154,084 - +0.6 1,154,084 - +2.0 1,154,084 - +0.8 1,154,183 - -0.8 1,154,231 + +0.3 1,154,232 - -0.4 1,154,276 + +0.9 1,154,276 + -0.8 1,154,276 + +0.5 1,154,276 + -0.8 1,154,276 + +0.1 1,154,276 + -0.0 1,154,276 + -0.7 1,154,277 - +0.1 1,154,277 - -1.2 1,154,277 - +0.9 1,154,277 - +0.1 1,154,325 - Psyr_1023 0.16 -1.6 1,154,325 - Psyr_1023 0.16 -2.6 1,154,376 + Psyr_1023 0.24 +0.1 1,154,574 + Psyr_1023 0.57 +0.5 1,154,574 + Psyr_1023 0.57 -1.5 1,154,749 - Psyr_1023 0.86 +1.1 1,154,749 - Psyr_1023 0.86 -1.6 1,154,758 + Psyr_1023 0.87 +2.1 1,154,758 + Psyr_1023 0.87 +1.6 1,154,758 + Psyr_1023 0.87 -0.5 1,154,758 + Psyr_1023 0.87 +0.6 1,154,759 - Psyr_1023 0.87 +0.3 1,154,759 - Psyr_1023 0.87 +0.4 1,154,759 - Psyr_1023 0.87 +1.5 1,154,759 - Psyr_1023 0.87 -0.5 1,154,759 - Psyr_1023 0.87 +0.2 1,154,759 - Psyr_1023 0.87 -1.5 1,154,759 - Psyr_1023 0.87 -0.3 1,154,759 - Psyr_1023 0.87 -0.5 1,154,759 - Psyr_1023 0.87 -0.9 1,154,998 + -0.3 1,154,998 + -0.9 1,154,998 + -1.2 1,155,005 + +0.4 1,155,005 + -1.7 1,155,006 - -3.2 1,155,156 - Psyr_1024 0.25 -2.0 1,155,156 - Psyr_1024 0.25 -1.5 1,155,252 + Psyr_1024 0.46 -0.6 1,155,483 + -1.9 1,155,484 - +0.4 1,155,484 - -1.7 1,155,511 + -1.7 1,155,511 + -0.1 1,155,619 + -0.3 1,155,619 + -1.7 1,155,619 + -1.5 1,155,814 + Psyr_1025 0.23 -1.2 1,155,987 + Psyr_1025 0.42 -0.5 1,155,987 + Psyr_1025 0.42 +1.1 1,155,987 + Psyr_1025 0.42 +1.6 1,155,987 + Psyr_1025 0.42 -0.3 1,155,988 - Psyr_1025 0.42 +0.3 1,155,988 - Psyr_1025 0.42 -1.1 1,155,988 - Psyr_1025 0.42 -1.4 1,155,988 - Psyr_1025 0.42 -0.5 1,155,988 - Psyr_1025 0.42 +0.3 1,155,988 - Psyr_1025 0.42 -0.6 1,155,989 + Psyr_1025 0.42 -0.7 1,155,989 + Psyr_1025 0.42 +0.8 1,156,015 - Psyr_1025 0.45 +0.6 1,156,071 + Psyr_1025 0.51 -0.7 1,156,072 - Psyr_1025 0.51 +1.1 1,156,072 - Psyr_1025 0.51 -1.0 1,156,072 - Psyr_1025 0.51 -1.2 1,156,095 + Psyr_1025 0.54 +2.1 1,156,095 + Psyr_1025 0.54 +0.1 1,156,095 + Psyr_1025 0.54 -0.2 1,156,275 + Psyr_1025 0.73 -0.1 1,156,275 + Psyr_1025 0.73 +1.1 1,156,275 + Psyr_1025 0.73 +2.3 1,156,275 + Psyr_1025 0.73 -1.5 1,156,275 + Psyr_1025 0.73 -2.9 1,156,275 + Psyr_1025 0.73 +0.1 1,156,275 + Psyr_1025 0.73 +0.4 1,156,275 + Psyr_1025 0.73 +0.1 1,156,275 + Psyr_1025 0.73 -3.3 1,156,276 - Psyr_1025 0.73 -1.2 1,156,276 - Psyr_1025 0.73 +0.3 1,156,276 - Psyr_1025 0.73 +1.1 1,156,276 - Psyr_1025 0.73 +4.7 1,156,276 - Psyr_1025 0.73 -1.1
Or see this region's nucleotide sequence