Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0971

Experiment: KB with Plumbagin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Plumbagin 10 mM
1,103,465	+		Psyr_0969	0.76	+0.8
1,103,466	-		Psyr_0969	0.76	+0.3
1,103,466	-		Psyr_0969	0.76	-0.7
1,103,466	-		Psyr_0969	0.76	+0.1
1,103,466	-		Psyr_0969	0.76	+1.4
1,103,498	+		Psyr_0969	0.81	+0.1
1,103,498	+		Psyr_0969	0.81	-0.4
1,103,498	+		Psyr_0969	0.81	+1.9
1,103,498	+		Psyr_0969	0.81	-0.4
1,103,498	+		Psyr_0969	0.81	-0.7
1,103,498	+		Psyr_0969	0.81	-0.9
1,103,498	+		Psyr_0969	0.81	+0.5
1,103,498	+		Psyr_0969	0.81	+1.1
1,103,498	+		Psyr_0969	0.81	-0.8
1,103,498	+		Psyr_0969	0.81	+0.0
1,103,498	+		Psyr_0969	0.81	+1.0
1,103,499	-		Psyr_0969	0.81	-0.7
1,103,499	-		Psyr_0969	0.81	+1.4
1,103,499	-		Psyr_0969	0.81	-2.3
1,103,499	-		Psyr_0969	0.81	+0.1
1,103,569	-				-2.7
1,103,587	+				-0.8
1,103,588	-				+1.7
1,103,652	+				+0.2
1,103,652	+				+0.9
1,103,652	+				-0.5
1,103,652	+				-1.0
1,103,653	-				-2.9
1,103,653	-				-2.5
1,103,653	-				-1.2
1,103,653	-				-3.7
1,103,662	+				+0.4
1,103,663	-				+1.4
1,103,681	+				-1.9
1,103,682	-				+1.5
1,103,746	+				-1.1
1,103,783	+				+0.1
1,103,784	-				-3.0
1,103,812	+				-1.5
1,103,881	+				-3.7
1,103,882	-				-1.3
1,103,882	-				-0.6
1,104,040	+		Psyr_0970	0.38	-1.5
1,104,041	-		Psyr_0970	0.38	+1.0
1,104,041	-		Psyr_0970	0.38	-2.7
1,104,280	+		Psyr_0970	0.81	-0.2
1,104,307	+		Psyr_0970	0.86	+1.4
1,104,309	+		Psyr_0970	0.86	+1.8
1,104,309	+		Psyr_0970	0.86	+0.3
1,104,309	+		Psyr_0970	0.86	-2.1
1,104,309	+		Psyr_0970	0.86	+3.1
1,104,309	+		Psyr_0970	0.86	+0.9
1,104,309	+		Psyr_0970	0.86	-3.1
1,104,310	-		Psyr_0970	0.87	+1.1
1,104,331	+				+2.0
1,104,331	+				-3.4
1,104,331	+				+0.1
1,104,331	+				+1.4
1,104,332	-				+1.0
1,104,332	-				-1.7
1,104,332	-				-0.1
1,104,349	-				-0.3
1,104,360	+				+0.1
1,104,364	+				+0.1
1,104,364	+				-0.9
1,104,365	-				+0.7
1,104,365	-				-0.6
1,104,365	-				+0.8
1,104,382	+				-2.5
1,104,382	+				-0.3
1,104,382	+				-1.2
1,104,382	+				-1.2
1,104,382	+				-2.7
1,104,382	+				+4.4
1,104,382	+				+0.4
1,104,382	+				-0.4
1,104,383	-				-0.8
1,104,383	-				-1.7
1,104,383	-				-1.2
1,104,383	-				+2.9
1,104,383	-				-0.5
1,104,383	-				+0.3
1,104,435	+				-0.0
1,104,435	+				-0.9
1,104,435	+				-0.4
1,104,435	+				+0.0
1,104,435	+				-0.1
1,104,435	+				+0.2
1,104,435	+				-0.3
1,104,435	+				+0.1
1,104,435	+				-2.8
1,104,436	-				-0.9
1,104,436	-				+0.3
1,104,436	-				+0.3
1,104,436	-				+0.2
1,104,438	-				+0.4
1,104,625	+		Psyr_0971	0.35	+0.6
1,104,625	+		Psyr_0971	0.35	-1.7
1,104,626	-		Psyr_0971	0.35	-1.2
1,104,626	-		Psyr_0971	0.35	-1.7
1,104,780	+		Psyr_0971	0.65	-0.4
1,104,793	+		Psyr_0971	0.68	-0.9
1,104,793	+		Psyr_0971	0.68	+0.7
1,104,793	+		Psyr_0971	0.68	-0.8
1,104,793	+		Psyr_0971	0.68	+0.1
1,104,793	+		Psyr_0971	0.68	-0.5
1,104,793	+		Psyr_0971	0.68	+0.1
1,104,793	+		Psyr_0971	0.68	-0.8
1,104,793	+		Psyr_0971	0.68	-0.8
1,104,793	+		Psyr_0971	0.68	-0.6
1,104,794	-		Psyr_0971	0.68	-0.4
1,104,794	-		Psyr_0971	0.68	-1.2
1,104,794	-		Psyr_0971	0.68	-0.1
1,104,794	-		Psyr_0971	0.68	+0.1
1,104,794	-		Psyr_0971	0.68	+1.1
1,104,794	-		Psyr_0971	0.68	-1.4
1,104,794	-		Psyr_0971	0.68	-2.5
1,104,794	-		Psyr_0971	0.68	-1.7
1,104,794	-		Psyr_0971	0.68	+1.4
1,104,794	-		Psyr_0971	0.68	+0.3
1,104,794	-		Psyr_0971	0.68	+3.1
1,104,794	-		Psyr_0971	0.68	-0.2
1,104,823	+		Psyr_0971	0.74	+1.1
1,104,823	+		Psyr_0971	0.74	-0.8
1,104,823	+		Psyr_0971	0.74	+0.5
1,104,823	+		Psyr_0971	0.74	-0.9
1,104,823	+		Psyr_0971	0.74	+2.1
1,104,823	+		Psyr_0971	0.74	-2.2
1,104,824	-		Psyr_0971	0.74	+1.0
1,104,824	-		Psyr_0971	0.74	+0.4
1,104,824	-		Psyr_0971	0.74	+0.6
1,104,827	-		Psyr_0971	0.75	-1.6
1,104,880	+		Psyr_0971	0.85	+0.5
1,104,881	-		Psyr_0971	0.85	-2.6
1,104,898	+		Psyr_0971	0.89	-1.5
1,104,899	-		Psyr_0971	0.89	-1.4
1,105,026	+				-0.7
1,105,027	-				-1.3
1,105,032	+				-0.0
1,105,032	+				-2.0
1,105,032	+				-2.0
1,105,032	+				-0.7
1,105,033	-				-0.1
1,105,033	-				+1.1
1,105,033	-				-2.5
1,105,099	+		Psyr_0972	0.27	+0.9
1,105,099	+		Psyr_0972	0.27	+1.6
1,105,100	-		Psyr_0972	0.27	-0.6
1,105,107	+		Psyr_0972	0.30	-2.1
1,105,276	+		Psyr_0972	0.89	+0.3
1,105,276	+		Psyr_0972	0.89	+0.7
1,105,276	+		Psyr_0972	0.89	-2.1
1,105,276	+		Psyr_0972	0.89	+1.4
1,105,277	-		Psyr_0972	0.89	+0.5
1,105,277	-		Psyr_0972	0.89	+0.5
1,105,277	-		Psyr_0972	0.89	+0.5
1,105,277	-		Psyr_0972	0.89	-0.7
1,105,277	-		Psyr_0972	0.89	-1.3
1,105,277	-		Psyr_0972	0.89	+0.7
1,105,277	-		Psyr_0972	0.89	+0.7
1,105,391	+				-0.9
1,105,391	+				+0.8
1,105,391	+				-0.5
1,105,391	+				+0.0
1,105,391	+				+0.3
1,105,391	+				+0.7
1,105,392	-				-0.9
1,105,392	-				+0.5
1,105,392	-				-0.6
1,105,392	-				+0.2
1,105,392	-				+1.0
1,105,392	-				-0.4
1,105,392	-				-1.1
1,105,392	-				-0.4
1,105,392	-				+0.1
1,105,392	-				+1.4
1,105,392	-				+0.2
1,105,392	-				-2.0
1,105,392	-				+0.7
1,105,402	+				-1.0
1,105,503	-				-1.5
1,105,503	-				+1.2
1,105,504	+				+0.1
1,105,504	+				-0.3
1,105,504	+				-1.7
1,105,504	+				+1.6
1,105,504	+				-1.6
1,105,504	+				+0.5
1,105,504	+				+0.8
1,105,505	-				+1.1
1,105,505	-				+0.3
1,105,505	-				+0.5
1,105,505	-				+0.0
1,105,505	-				+1.4
1,105,505	-				+0.5
1,105,569	+				+1.2
1,105,569	+				+0.4
1,105,569	+				+2.4
1,105,569	+				+0.2
1,105,569	+				-0.3
1,105,569	+				+0.2
1,105,569	+				-1.5
1,105,569	+				+0.8
1,105,569	+				+0.3
1,105,570	-				+3.1
1,105,570	-				+2.1
1,105,570	-				+0.3
1,105,570	-				-2.4
1,105,570	-				-0.7
1,105,571	+				-1.1
1,105,571	+				+1.6
1,105,624	+				-1.1
1,105,625	-				+1.0
1,105,723	+		Psyr_0973	0.14	-1.0
1,105,723	+		Psyr_0973	0.14	+0.5
1,105,724	-		Psyr_0973	0.14	+0.1
1,105,724	-		Psyr_0973	0.14	+0.1
1,105,724	-		Psyr_0973	0.14	-0.1
1,105,724	-		Psyr_0973	0.14	+0.5
1,105,744	+		Psyr_0973	0.16	-1.4