Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0487

Experiment: KB with Plumbagin 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0486 and Psyr_0487 are separated by 166 nucleotidesPsyr_0487 and Psyr_0488 are separated by 254 nucleotidesPsyr_0488 and Psyr_0489 are separated by 46 nucleotides Psyr_0486: Psyr_0486 - TonB, C-terminal, at 523,191 to 524,093 _0486 Psyr_0487: Psyr_0487 - glutathione synthase, at 524,260 to 525,219 _0487 Psyr_0488: Psyr_0488 - Response regulator receiver, at 525,474 to 525,884 _0488 Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296 _0489 Position (kb) 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.366 kb on + strand, within Psyr_0486at 523.367 kb on - strand, within Psyr_0486at 523.367 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.415 kb on - strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.444 kb on + strand, within Psyr_0486at 523.492 kb on + strand, within Psyr_0486at 523.493 kb on - strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.724 kb on + strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.725 kb on - strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.953 kb on + strand, within Psyr_0486at 523.954 kb on - strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.957 kb on + strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 523.958 kb on - strand, within Psyr_0486at 524.015 kb on + strandat 524.142 kb on + strandat 524.510 kb on - strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.227 kb on - strandat 525.360 kb on + strandat 525.360 kb on + strandat 525.360 kb on + strandat 525.637 kb on + strand, within Psyr_0488at 525.637 kb on + strand, within Psyr_0488at 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.879 kb on - strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.912 kb on - strandat 525.912 kb on - strandat 525.973 kb on + strand, within Psyr_0489at 526.156 kb on - strand, within Psyr_0489

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
remove
523,366 + Psyr_0486 0.19 +1.3
523,366 + Psyr_0486 0.19 +0.7
523,366 + Psyr_0486 0.19 -3.3
523,366 + Psyr_0486 0.19 +0.7
523,366 + Psyr_0486 0.19 +0.2
523,367 - Psyr_0486 0.19 -1.0
523,367 - Psyr_0486 0.19 -1.4
523,415 - Psyr_0486 0.25 +0.1
523,415 - Psyr_0486 0.25 -0.8
523,415 - Psyr_0486 0.25 -2.8
523,415 - Psyr_0486 0.25 -0.4
523,444 + Psyr_0486 0.28 +1.1
523,444 + Psyr_0486 0.28 +0.5
523,444 + Psyr_0486 0.28 -0.2
523,492 + Psyr_0486 0.33 -1.8
523,493 - Psyr_0486 0.33 -2.4
523,724 + Psyr_0486 0.59 -2.0
523,724 + Psyr_0486 0.59 -0.1
523,724 + Psyr_0486 0.59 +0.3
523,724 + Psyr_0486 0.59 -0.3
523,724 + Psyr_0486 0.59 +0.1
523,725 - Psyr_0486 0.59 +1.5
523,725 - Psyr_0486 0.59 -1.2
523,725 - Psyr_0486 0.59 +0.8
523,953 + Psyr_0486 0.84 -3.4
523,953 + Psyr_0486 0.84 -1.0
523,953 + Psyr_0486 0.84 -2.3
523,954 - Psyr_0486 0.84 -1.8
523,957 + Psyr_0486 0.85 +0.7
523,957 + Psyr_0486 0.85 +0.7
523,957 + Psyr_0486 0.85 -0.1
523,957 + Psyr_0486 0.85 +0.1
523,957 + Psyr_0486 0.85 +0.5
523,957 + Psyr_0486 0.85 +1.4
523,957 + Psyr_0486 0.85 -2.0
523,957 + Psyr_0486 0.85 +1.1
523,957 + Psyr_0486 0.85 +0.1
523,957 + Psyr_0486 0.85 -1.7
523,957 + Psyr_0486 0.85 +1.1
523,957 + Psyr_0486 0.85 +0.7
523,957 + Psyr_0486 0.85 -0.4
523,957 + Psyr_0486 0.85 +0.4
523,957 + Psyr_0486 0.85 +0.4
523,958 - Psyr_0486 0.85 -1.1
523,958 - Psyr_0486 0.85 +0.6
523,958 - Psyr_0486 0.85 -0.6
523,958 - Psyr_0486 0.85 +1.6
523,958 - Psyr_0486 0.85 -3.6
523,958 - Psyr_0486 0.85 -0.4
523,958 - Psyr_0486 0.85 +0.3
523,958 - Psyr_0486 0.85 -0.2
523,958 - Psyr_0486 0.85 -0.7
523,958 - Psyr_0486 0.85 +1.4
523,958 - Psyr_0486 0.85 +0.1
523,958 - Psyr_0486 0.85 +0.0
523,958 - Psyr_0486 0.85 +0.3
524,015 + +0.4
524,142 + -1.0
524,510 - Psyr_0487 0.26 -1.4
525,107 + Psyr_0487 0.88 -1.2
525,107 + Psyr_0487 0.88 +1.2
525,107 + Psyr_0487 0.88 -0.7
525,107 + Psyr_0487 0.88 +0.7
525,107 + Psyr_0487 0.88 +1.2
525,108 - Psyr_0487 0.88 -1.7
525,108 - Psyr_0487 0.88 -1.8
525,108 - Psyr_0487 0.88 -2.4
525,108 - Psyr_0487 0.88 -0.8
525,227 - -2.2
525,360 + +2.2
525,360 + -1.5
525,360 + +3.7
525,637 + Psyr_0488 0.40 +0.2
525,637 + Psyr_0488 0.40 +0.2
525,877 + +0.3
525,877 + -1.1
525,877 + -0.1
525,877 + -0.4
525,877 + +0.7
525,877 + -2.5
525,877 + -1.4
525,877 + +0.9
525,877 + -1.7
525,877 + -0.9
525,877 + +1.4
525,877 + +0.4
525,878 - +2.0
525,878 - -2.0
525,878 - -2.5
525,878 - -0.9
525,878 - -1.2
525,878 - -2.2
525,878 - -2.8
525,878 - +0.9
525,878 - -0.4
525,879 - -1.9
525,900 + +0.7
525,900 + -2.5
525,900 + -0.1
525,900 + +1.6
525,912 - -0.3
525,912 - -0.2
525,973 + Psyr_0489 0.11 -2.5
526,156 - Psyr_0489 0.61 -0.5

Or see this region's nucleotide sequence