Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15280

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
3,421,935	-		PFLU_RS15270	0.59	-0.2
3,422,202	+		PFLU_RS15270	0.79	-2.4
3,422,202	+		PFLU_RS15270	0.79	-1.5
3,422,202	+		PFLU_RS15270	0.79	+2.0
3,422,202	+		PFLU_RS15270	0.79	+3.1
3,422,203	-		PFLU_RS15270	0.79	+0.2
3,422,203	-		PFLU_RS15270	0.79	+1.9
3,422,203	-		PFLU_RS15270	0.79	-0.3
3,422,315	+		PFLU_RS15270	0.88	+1.8
3,422,315	+		PFLU_RS15270	0.88	-2.6
3,422,315	+		PFLU_RS15270	0.88	-0.5
3,422,315	+		PFLU_RS15270	0.88	+0.0
3,422,315	+		PFLU_RS15270	0.88	-0.7
3,422,315	+		PFLU_RS15270	0.88	-0.8
3,422,316	-		PFLU_RS15270	0.88	+2.6
3,422,316	-		PFLU_RS15270	0.88	-0.6
3,422,316	-		PFLU_RS15270	0.88	+2.0
3,422,316	-		PFLU_RS15270	0.88	+3.6
3,422,316	-		PFLU_RS15270	0.88	+0.5
3,422,316	-		PFLU_RS15270	0.88	-1.2
3,422,318	+		PFLU_RS15270	0.88	-1.2
3,422,318	+		PFLU_RS15270	0.88	+2.7
3,422,318	+		PFLU_RS15270	0.88	+0.5
3,422,319	-		PFLU_RS15270	0.88	+1.2
3,422,327	+		PFLU_RS15270	0.88	-0.8
3,422,328	-		PFLU_RS15270	0.89	+2.9
3,422,328	-		PFLU_RS15270	0.89	-2.5
3,422,394	+				-0.9
3,422,394	+				-1.5
3,422,426	-				+2.4
3,422,447	+				+0.8
3,422,448	-				-1.2
3,422,490	+				+1.7
3,422,491	-				-1.5
3,422,620	+				-1.5
3,422,692	+		PFLU_RS15275	0.34	-0.1
3,422,692	+		PFLU_RS15275	0.34	-1.1
3,422,693	-		PFLU_RS15275	0.35	-2.0
3,422,693	-		PFLU_RS15275	0.35	-0.0
3,422,693	-		PFLU_RS15275	0.35	-1.4
3,422,795	+		PFLU_RS15275	0.83	+0.8
3,422,819	+				-1.9
3,422,819	+				-0.9
3,422,820	-				-0.4
3,422,820	-				+0.4
3,422,879	-				-1.1
3,422,879	-				+0.2
3,422,879	-				-0.8
3,422,943	+				-0.4
3,422,945	+				+0.2
3,422,945	+				-1.3
3,422,945	+				+1.2
3,422,945	+				+0.4
3,422,945	+				+0.4
3,422,945	+				+0.8
3,422,945	+				-1.6
3,422,945	+				-1.1
3,422,945	+				-0.4
3,422,945	+				-0.6
3,422,946	-				+1.2
3,422,946	-				+1.3
3,422,946	-				-0.9
3,422,946	-				-0.5
3,422,946	-				-1.6
3,422,946	-				-0.1
3,422,946	-				-0.8
3,422,954	+				-0.4
3,422,954	+				+0.7
3,422,954	+				+5.0
3,422,955	-				-0.6
3,422,955	-				-0.2
3,422,955	-				+0.3
3,423,122	+		PFLU_RS15280	0.37	+0.9
3,423,122	+		PFLU_RS15280	0.37	+2.1
3,423,122	+		PFLU_RS15280	0.37	+3.1
3,423,123	-		PFLU_RS15280	0.38	+1.0
3,423,123	-		PFLU_RS15280	0.38	+2.2
3,423,123	-		PFLU_RS15280	0.38	-2.7
3,423,123	-		PFLU_RS15280	0.38	-1.2
3,423,123	-		PFLU_RS15280	0.38	-0.1
3,423,146	+		PFLU_RS15280	0.42	+1.6
3,423,147	-		PFLU_RS15280	0.42	+2.3
3,423,147	-		PFLU_RS15280	0.42	-0.1
3,423,305	+		PFLU_RS15280	0.71	+0.6
3,423,305	+		PFLU_RS15280	0.71	-1.9
3,423,306	-		PFLU_RS15280	0.71	+0.1
3,423,306	-		PFLU_RS15280	0.71	-0.3
3,423,439	-				-0.1
3,423,493	+				-1.4
3,423,493	+				+1.4
3,423,494	-				-1.0
3,423,494	-				-0.5
3,423,496	+				-0.9
3,423,497	-				-0.5
3,423,497	-				-1.5
3,423,497	-				-2.1
3,423,582	-				-0.7
3,423,582	-				+2.9
3,423,582	-				+0.6
3,423,582	-				-0.5
3,423,640	-				+0.9
3,423,707	+				+1.1
3,423,707	+				-1.0
3,423,777	+				-0.2
3,423,823	-				-0.1
3,423,876	+				+0.4
3,423,876	+				-2.2
3,423,876	+				-1.3
3,423,890	+				-0.7
3,423,891	-				-3.0
3,423,891	-				-2.0
3,423,940	+				-0.1
3,423,940	+				-2.0
3,423,941	-				-0.2
3,423,941	-				-2.0
3,423,969	+				+0.5
3,424,186	+		PFLU_RS15285	0.21	-0.1
3,424,186	+		PFLU_RS15285	0.21	+1.8
3,424,186	+		PFLU_RS15285	0.21	+1.7
3,424,187	-		PFLU_RS15285	0.22	-0.4
3,424,187	-		PFLU_RS15285	0.22	-1.6
3,424,187	-		PFLU_RS15285	0.22	+0.4
3,424,187	-		PFLU_RS15285	0.22	+0.9
3,424,187	-		PFLU_RS15285	0.22	-1.4
3,424,294	+		PFLU_RS15285	0.29	+1.1
3,424,294	+		PFLU_RS15285	0.29	-1.6
3,424,294	+		PFLU_RS15285	0.29	+0.6
3,424,294	+		PFLU_RS15285	0.29	-0.8
3,424,294	+		PFLU_RS15285	0.29	-1.0
3,424,294	+		PFLU_RS15285	0.29	-1.5
3,424,295	-		PFLU_RS15285	0.29	-0.9
3,424,295	-		PFLU_RS15285	0.29	+0.7
3,424,295	-		PFLU_RS15285	0.29	+1.3
3,424,295	-		PFLU_RS15285	0.29	-0.7
3,424,295	-		PFLU_RS15285	0.29	+6.3
3,424,295	-		PFLU_RS15285	0.29	-0.2
3,424,302	+		PFLU_RS15285	0.30	-0.5
3,424,302	+		PFLU_RS15285	0.30	-1.2
3,424,302	+		PFLU_RS15285	0.30	-1.6
3,424,303	-		PFLU_RS15285	0.30	+0.5
3,424,303	-		PFLU_RS15285	0.30	-0.2
3,424,342	+		PFLU_RS15285	0.33	+1.5
3,424,342	+		PFLU_RS15285	0.33	+0.4
3,424,342	+		PFLU_RS15285	0.33	+1.4
3,424,342	+		PFLU_RS15285	0.33	+2.0
3,424,342	+		PFLU_RS15285	0.33	-0.0
3,424,342	+		PFLU_RS15285	0.33	-2.3
3,424,342	+		PFLU_RS15285	0.33	-0.7
3,424,342	+		PFLU_RS15285	0.33	-2.6
3,424,343	-		PFLU_RS15285	0.33	-1.3
3,424,343	-		PFLU_RS15285	0.33	-0.8
3,424,343	-		PFLU_RS15285	0.33	+0.2
3,424,343	-		PFLU_RS15285	0.33	-0.2
3,424,343	-		PFLU_RS15285	0.33	+3.4
3,424,343	-		PFLU_RS15285	0.33	+1.4
3,424,343	-		PFLU_RS15285	0.33	+1.8
3,424,343	-		PFLU_RS15285	0.33	-1.1
3,424,343	-		PFLU_RS15285	0.33	-0.6
3,424,343	-		PFLU_RS15285	0.33	+1.7
3,424,345	+		PFLU_RS15285	0.33	-1.0
3,424,345	+		PFLU_RS15285	0.33	-1.2
3,424,345	+		PFLU_RS15285	0.33	-2.3
3,424,345	+		PFLU_RS15285	0.33	-1.5
3,424,345	+		PFLU_RS15285	0.33	-1.4
3,424,345	+		PFLU_RS15285	0.33	+2.0
3,424,346	-		PFLU_RS15285	0.33	-0.6
3,424,346	-		PFLU_RS15285	0.33	-0.5
3,424,346	-		PFLU_RS15285	0.33	-1.7
3,424,346	-		PFLU_RS15285	0.33	+1.6
3,424,346	-		PFLU_RS15285	0.33	-0.2
3,424,346	-		PFLU_RS15285	0.33	+1.6
3,424,346	-		PFLU_RS15285	0.33	+2.5
3,424,346	-		PFLU_RS15285	0.33	+1.4
3,424,346	-		PFLU_RS15285	0.33	-0.9
3,424,346	-		PFLU_RS15285	0.33	+3.0
3,424,346	-		PFLU_RS15285	0.33	-0.2
3,424,346	-		PFLU_RS15285	0.33	-1.2
3,424,346	-		PFLU_RS15285	0.33	+2.5
3,424,346	-		PFLU_RS15285	0.33	+0.4
3,424,388	-		PFLU_RS15285	0.36	-0.5
3,424,388	-		PFLU_RS15285	0.36	+0.4
3,424,388	-		PFLU_RS15285	0.36	+0.6
3,424,388	-		PFLU_RS15285	0.36	+2.3
3,424,388	-		PFLU_RS15285	0.36	+0.2
3,424,388	-		PFLU_RS15285	0.36	-1.6
3,424,388	-		PFLU_RS15285	0.36	-0.4
3,424,388	-		PFLU_RS15285	0.36	+0.2
3,424,388	-		PFLU_RS15285	0.36	+0.0
3,424,388	-		PFLU_RS15285	0.36	+0.9
3,424,388	-		PFLU_RS15285	0.36	-1.0
3,424,388	-		PFLU_RS15285	0.36	-0.4
3,424,388	-		PFLU_RS15285	0.36	+1.5
3,424,404	+		PFLU_RS15285	0.37	+2.1
3,424,404	+		PFLU_RS15285	0.37	+2.8
3,424,405	-		PFLU_RS15285	0.37	+0.8
3,424,405	-		PFLU_RS15285	0.37	+0.4