Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08925

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
1,976,275	+		PFLU_RS08915	0.56	-0.9
1,976,287	+		PFLU_RS08915	0.57	+0.8
1,976,287	+		PFLU_RS08915	0.57	-2.3
1,976,287	+		PFLU_RS08915	0.57	+1.5
1,976,287	+		PFLU_RS08915	0.57	+0.4
1,976,287	+		PFLU_RS08915	0.57	-1.4
1,976,288	-		PFLU_RS08915	0.57	-0.1
1,976,288	-		PFLU_RS08915	0.57	+1.1
1,976,288	-		PFLU_RS08915	0.57	+0.7
1,976,288	-		PFLU_RS08915	0.57	-0.2
1,976,288	-		PFLU_RS08915	0.57	-0.4
1,976,288	-		PFLU_RS08915	0.57	-1.4
1,976,288	-		PFLU_RS08915	0.57	+1.0
1,976,288	-		PFLU_RS08915	0.57	+0.5
1,976,288	-		PFLU_RS08915	0.57	+0.6
1,976,288	-		PFLU_RS08915	0.57	+0.7
1,976,437	+		PFLU_RS08915	0.75	+1.4
1,976,437	+		PFLU_RS08915	0.75	-1.4
1,976,437	+		PFLU_RS08915	0.75	-0.3
1,976,437	+		PFLU_RS08915	0.75	+0.7
1,976,437	+		PFLU_RS08915	0.75	-2.7
1,976,437	+		PFLU_RS08915	0.75	+2.0
1,976,437	+		PFLU_RS08915	0.75	+3.7
1,976,437	+		PFLU_RS08915	0.75	-1.2
1,976,437	+		PFLU_RS08915	0.75	+0.9
1,976,437	+		PFLU_RS08915	0.75	-0.1
1,976,437	+		PFLU_RS08915	0.75	-1.6
1,976,437	+		PFLU_RS08915	0.75	+0.1
1,976,437	+		PFLU_RS08915	0.75	-2.2
1,976,438	-		PFLU_RS08915	0.75	-0.5
1,976,438	-		PFLU_RS08915	0.75	-0.4
1,976,438	-		PFLU_RS08915	0.75	+0.3
1,976,438	-		PFLU_RS08915	0.75	-1.6
1,976,438	-		PFLU_RS08915	0.75	+1.6
1,976,438	-		PFLU_RS08915	0.75	+2.1
1,976,438	-		PFLU_RS08915	0.75	-1.9
1,976,438	-		PFLU_RS08915	0.75	+1.5
1,976,438	-		PFLU_RS08915	0.75	-1.4
1,976,566	-		PFLU_RS08915	0.90	-0.7
1,976,646	+				-0.1
1,976,646	+				+1.5
1,976,646	+				-1.1
1,976,647	-				+0.2
1,976,647	-				-1.1
1,976,650	+				+3.8
1,976,650	+				-0.2
1,976,650	+				+1.3
1,976,650	+				-1.3
1,976,650	+				-1.7
1,976,651	-				-1.4
1,976,651	-				+0.8
1,976,651	-				+0.7
1,976,651	-				+0.7
1,976,669	+				-0.2
1,976,669	+				-2.3
1,976,669	+				-2.0
1,976,669	+				-0.3
1,976,669	+				-0.2
1,976,669	+				-1.9
1,976,669	+				-0.4
1,976,669	+				-0.9
1,976,669	+				+0.4
1,976,669	+				+0.1
1,976,669	+				-0.5
1,976,669	+				-0.6
1,976,670	-				-0.2
1,976,670	-				-1.8
1,976,670	-				+0.5
1,976,670	-				-1.2
1,976,670	-				-1.9
1,976,670	-				-1.2
1,976,670	-				+0.7
1,976,670	-				+1.9
1,976,670	-				+1.0
1,976,670	-				+1.0
1,976,670	-				-3.1
1,976,670	-				+0.9
1,976,670	-				-0.9
1,976,670	-				+0.1
1,976,670	-				+1.1
1,976,727	+				-1.3
1,976,727	+				+1.6
1,976,728	-				+0.3
1,976,728	-				+1.3
1,976,728	-				+2.4
1,976,768	+				+2.5
1,976,769	-				-1.4
1,976,769	-				+0.5
1,976,814	+				+2.4
1,976,815	-				-0.2
1,976,815	-				+0.4
1,976,815	-				+0.3
1,976,825	+				+0.2
1,976,825	+				-0.2
1,976,825	+				+1.2
1,976,825	+				-0.3
1,976,826	-				+1.8
1,976,826	-				-1.3
1,976,826	-				+4.7
1,976,826	-				+0.2
1,976,828	+				+0.8
1,976,828	+				-0.7
1,976,828	+				+0.7
1,976,828	+				+0.7
1,976,828	+				+2.3
1,976,828	+				+0.1
1,976,828	+				-0.0
1,976,828	+				-1.9
1,976,828	+				-0.2
1,976,828	+				+3.9
1,976,828	+				-1.3
1,976,828	+				-0.5
1,976,828	+				-0.0
1,976,829	-				+1.2
1,976,829	-				+1.2
1,976,829	-				-0.4
1,976,829	-				+2.0
1,976,829	-				+0.8
1,976,829	-				-0.6
1,976,829	-				+3.8
1,976,829	-				+0.3
1,976,829	-				+1.0
1,976,829	-				+2.5
1,976,829	-				+1.6
1,976,829	-				-1.0
1,976,829	-				+0.1
1,976,831	+				-2.1
1,976,831	+				-0.5
1,976,831	+				-0.7
1,976,831	+				-0.9
1,976,831	+				+2.2
1,976,831	+				-0.0
1,976,831	+				-2.3
1,976,831	+				+1.8
1,976,831	+				+0.5
1,976,831	+				+0.0
1,976,831	+				-1.6
1,976,831	+				+0.8
1,976,831	+				+0.6
1,976,832	-				-0.1
1,976,832	-				+1.0
1,976,832	-				+0.1
1,976,832	-				+2.1
1,976,832	-				+2.3
1,976,832	-				+4.6
1,976,832	-				+1.6
1,976,832	-				-1.2
1,976,832	-				+1.6
1,976,832	-				+0.7
1,976,832	-				+0.5
1,976,863	+				-0.4
1,976,863	+				-1.1
1,976,863	+				+0.2
1,976,863	+				-0.3
1,976,863	+				-0.6
1,976,863	+				+0.2
1,976,864	-				+3.8
1,976,864	-				+1.7
1,976,864	-				+0.8
1,976,864	-				-0.9
1,976,864	-				+0.5
1,976,864	-				+0.0
1,976,864	-				+4.3
1,976,872	+				+0.6
1,976,872	+				-2.1
1,976,872	+				+0.2
1,976,873	-				+2.4
1,976,873	-				+1.2
1,976,873	-				-1.4
1,976,873	-				-0.3
1,976,883	-				-1.0
1,976,883	-				-0.4
1,976,885	+				-0.4
1,976,886	-				+0.5
1,976,886	-				+1.6
1,976,886	-				+1.6
1,976,930	+				+0.3
1,976,930	+				+2.1
1,976,930	+				-1.0
1,976,930	+				+2.2
1,976,930	+				-1.5
1,976,930	+				-0.2
1,976,931	-				+0.6
1,976,931	-				+2.4
1,976,931	-				+0.8
1,976,931	-				+1.2
1,976,931	-				-1.2
1,977,015	+		PFLU_RS08920	0.32	+1.5
1,977,023	+		PFLU_RS08920	0.35	+1.1
1,977,063	+		PFLU_RS08920	0.47	+0.4
1,977,063	+		PFLU_RS08920	0.47	+1.6
1,977,063	+		PFLU_RS08920	0.47	+2.0
1,977,064	-		PFLU_RS08920	0.48	+2.2
1,977,064	-		PFLU_RS08920	0.48	-1.0
1,977,064	-		PFLU_RS08920	0.48	+2.0
1,977,064	-		PFLU_RS08920	0.48	+2.1
1,977,064	-		PFLU_RS08920	0.48	+2.5
1,977,097	+		PFLU_RS08920	0.58	+2.5
1,977,097	+		PFLU_RS08920	0.58	+0.6
1,977,158	+		PFLU_RS08920	0.78	-1.3
1,977,158	+		PFLU_RS08920	0.78	+2.2
1,977,158	+		PFLU_RS08920	0.78	+1.8
1,977,158	+		PFLU_RS08920	0.78	+0.3
1,977,158	+		PFLU_RS08920	0.78	+3.3
1,977,158	+		PFLU_RS08920	0.78	-0.9
1,977,158	+		PFLU_RS08920	0.78	+0.9
1,977,158	+		PFLU_RS08920	0.78	-0.6
1,977,158	+		PFLU_RS08920	0.78	-0.7
1,977,158	+		PFLU_RS08920	0.78	+2.5
1,977,158	+		PFLU_RS08920	0.78	-0.4
1,977,158	+		PFLU_RS08920	0.78	+0.4
1,977,158	+		PFLU_RS08920	0.78	+0.5
1,977,158	+		PFLU_RS08920	0.78	+3.4
1,977,158	+		PFLU_RS08920	0.78	+2.0
1,977,158	+		PFLU_RS08920	0.78	+3.3
1,977,158	+		PFLU_RS08920	0.78	-0.2
1,977,158	+		PFLU_RS08920	0.78	+0.1
1,977,158	+		PFLU_RS08920	0.78	+2.8
1,977,158	+		PFLU_RS08920	0.78	+2.0
1,977,158	+		PFLU_RS08920	0.78	+1.1
1,977,158	+		PFLU_RS08920	0.78	+1.4
1,977,158	+		PFLU_RS08920	0.78	+1.1
1,977,158	+		PFLU_RS08920	0.78	+1.1
1,977,158	+		PFLU_RS08920	0.78	+2.4
1,977,158	+		PFLU_RS08920	0.78	+0.6
1,977,158	+		PFLU_RS08920	0.78	+0.2
1,977,159	-		PFLU_RS08920	0.78	+0.9
1,977,159	-		PFLU_RS08920	0.78	+3.7
1,977,159	-		PFLU_RS08920	0.78	-0.9
1,977,159	-		PFLU_RS08920	0.78	-0.1
1,977,159	-		PFLU_RS08920	0.78	+1.6
1,977,159	-		PFLU_RS08920	0.78	+0.6
1,977,159	-		PFLU_RS08920	0.78	+1.6
1,977,159	-		PFLU_RS08920	0.78	+0.5
1,977,159	-		PFLU_RS08920	0.78	+2.1
1,977,159	-		PFLU_RS08920	0.78	+0.0
1,977,159	-		PFLU_RS08920	0.78	+0.9
1,977,159	-		PFLU_RS08920	0.78	+0.2
1,977,159	-		PFLU_RS08920	0.78	+3.6
1,977,159	-		PFLU_RS08920	0.78	+1.2
1,977,159	-		PFLU_RS08920	0.78	+1.2
1,977,159	-		PFLU_RS08920	0.78	+2.7
1,977,159	-		PFLU_RS08920	0.78	-0.4
1,977,159	-		PFLU_RS08920	0.78	-0.7
1,977,159	-		PFLU_RS08920	0.78	-0.4
1,977,159	-		PFLU_RS08920	0.78	+0.9
1,977,159	-		PFLU_RS08920	0.78	+2.6
1,977,159	-		PFLU_RS08920	0.78	+0.1
1,977,159	-		PFLU_RS08920	0.78	+1.5
1,977,159	-		PFLU_RS08920	0.78	+1.5
1,977,159	-		PFLU_RS08920	0.78	+5.7
1,977,159	-		PFLU_RS08920	0.78	+2.0
1,977,159	-		PFLU_RS08920	0.78	+0.8
1,977,159	-		PFLU_RS08920	0.78	+2.4
1,977,159	-		PFLU_RS08920	0.78	+1.2
1,977,159	-		PFLU_RS08920	0.78	+0.9
1,977,246	-				-1.6
1,977,246	-				+0.2
1,977,305	+				+3.4
1,977,305	+				+2.3
1,977,305	+				+2.1
1,977,306	-				+1.4
1,977,306	-				+0.8
1,977,306	-				+0.4
1,977,306	-				+1.7
1,977,306	-				+0.4
1,977,379	+				+2.4
1,977,379	+				+1.0
1,977,379	+				+0.5
1,977,380	-				+0.8
1,977,380	-				+1.3
1,977,380	-				+1.4
1,977,380	-				-0.4
1,977,380	-				+0.6
1,977,380	-				-0.2
1,977,380	-				+2.1
1,977,380	-				+0.5
1,977,396	+		PFLU_RS08925	0.10	+0.5
1,977,396	+		PFLU_RS08925	0.10	+1.4
1,977,396	+		PFLU_RS08925	0.10	+0.6
1,977,396	+		PFLU_RS08925	0.10	+5.2
1,977,396	+		PFLU_RS08925	0.10	+0.8
1,977,396	+		PFLU_RS08925	0.10	+0.9
1,977,397	-		PFLU_RS08925	0.10	-0.3
1,977,397	-		PFLU_RS08925	0.10	+2.4
1,977,397	-		PFLU_RS08925	0.10	+4.7
1,977,415	+		PFLU_RS08925	0.12	+2.7
1,977,415	+		PFLU_RS08925	0.12	+1.5
1,977,415	+		PFLU_RS08925	0.12	+1.1
1,977,415	+		PFLU_RS08925	0.12	-1.2
1,977,415	+		PFLU_RS08925	0.12	+1.7
1,977,415	+		PFLU_RS08925	0.12	+1.1
1,977,415	+		PFLU_RS08925	0.12	+1.2
1,977,416	-		PFLU_RS08925	0.12	-0.1
1,977,416	-		PFLU_RS08925	0.12	+1.3
1,977,416	-		PFLU_RS08925	0.12	-0.7
1,977,416	-		PFLU_RS08925	0.12	+0.9
1,977,416	-		PFLU_RS08925	0.12	+1.9
1,977,416	-		PFLU_RS08925	0.12	+2.1
1,977,418	+		PFLU_RS08925	0.12	+0.6
1,977,418	+		PFLU_RS08925	0.12	+1.0
1,977,418	+		PFLU_RS08925	0.12	+1.0
1,977,418	+		PFLU_RS08925	0.12	+0.1
1,977,418	+		PFLU_RS08925	0.12	+0.7
1,977,419	-		PFLU_RS08925	0.12	-1.1
1,977,419	-		PFLU_RS08925	0.12	-0.2
1,977,419	-		PFLU_RS08925	0.12	-1.4
1,977,419	-		PFLU_RS08925	0.12	+0.6
1,977,475	+		PFLU_RS08925	0.15	-0.2
1,977,475	+		PFLU_RS08925	0.15	+0.1
1,977,475	+		PFLU_RS08925	0.15	+2.3
1,977,475	+		PFLU_RS08925	0.15	+1.0
1,977,475	+		PFLU_RS08925	0.15	-0.3
1,977,475	+		PFLU_RS08925	0.15	+1.9
1,977,475	+		PFLU_RS08925	0.15	+0.2
1,977,475	+		PFLU_RS08925	0.15	+3.6
1,977,475	+		PFLU_RS08925	0.15	+1.5
1,977,475	+		PFLU_RS08925	0.15	+1.5
1,977,475	+		PFLU_RS08925	0.15	-1.8
1,977,475	+		PFLU_RS08925	0.15	+2.4
1,977,475	+		PFLU_RS08925	0.15	+0.2
1,977,475	+		PFLU_RS08925	0.15	+1.6
1,977,475	+		PFLU_RS08925	0.15	+0.2
1,977,475	+		PFLU_RS08925	0.15	+0.5
1,977,475	+		PFLU_RS08925	0.15	+1.5
1,977,475	+		PFLU_RS08925	0.15	+1.7
1,977,475	+		PFLU_RS08925	0.15	-0.9
1,977,476	-		PFLU_RS08925	0.15	+0.6
1,977,476	-		PFLU_RS08925	0.15	+0.3
1,977,476	-		PFLU_RS08925	0.15	+1.4
1,977,476	-		PFLU_RS08925	0.15	+1.6
1,977,476	-		PFLU_RS08925	0.15	-1.1
1,977,476	-		PFLU_RS08925	0.15	+3.3
1,977,476	-		PFLU_RS08925	0.15	+2.4
1,977,476	-		PFLU_RS08925	0.15	-2.3
1,977,476	-		PFLU_RS08925	0.15	+1.4
1,977,476	-		PFLU_RS08925	0.15	+1.3
1,977,502	-		PFLU_RS08925	0.17	+4.3
1,977,502	-		PFLU_RS08925	0.17	+0.2
1,977,519	+		PFLU_RS08925	0.18	+1.5
1,977,519	+		PFLU_RS08925	0.18	+0.7
1,977,520	-		PFLU_RS08925	0.18	+0.1
1,977,544	+		PFLU_RS08925	0.19	+2.0
1,977,544	+		PFLU_RS08925	0.19	+0.6
1,977,544	+		PFLU_RS08925	0.19	+0.1
1,977,545	-		PFLU_RS08925	0.19	-1.7
1,977,545	-		PFLU_RS08925	0.19	-0.9
1,977,607	-		PFLU_RS08925	0.23	+2.3
1,977,619	+		PFLU_RS08925	0.24	-0.4
1,977,619	+		PFLU_RS08925	0.24	+2.7
1,977,619	+		PFLU_RS08925	0.24	+0.4
1,977,619	+		PFLU_RS08925	0.24	-0.3
1,977,619	+		PFLU_RS08925	0.24	-1.1
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