Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07065

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
1,574,789	+		PFLU_RS07060	0.24	-0.9
1,574,789	+		PFLU_RS07060	0.24	-1.4
1,574,789	+		PFLU_RS07060	0.24	+0.2
1,574,789	+		PFLU_RS07060	0.24	-0.3
1,574,789	+		PFLU_RS07060	0.24	-1.6
1,574,790	-		PFLU_RS07060	0.24	+1.2
1,574,790	-		PFLU_RS07060	0.24	+0.3
1,574,790	-		PFLU_RS07060	0.24	-0.8
1,574,790	-		PFLU_RS07060	0.24	-0.5
1,574,793	+		PFLU_RS07060	0.24	-1.7
1,574,793	+		PFLU_RS07060	0.24	+2.5
1,574,793	+		PFLU_RS07060	0.24	+0.7
1,574,793	+		PFLU_RS07060	0.24	-0.5
1,574,793	+		PFLU_RS07060	0.24	-0.4
1,574,793	+		PFLU_RS07060	0.24	+2.0
1,574,793	+		PFLU_RS07060	0.24	+0.3
1,574,793	+		PFLU_RS07060	0.24	+0.8
1,574,793	+		PFLU_RS07060	0.24	-0.4
1,574,793	+		PFLU_RS07060	0.24	-2.3
1,574,794	-		PFLU_RS07060	0.24	-0.4
1,574,794	-		PFLU_RS07060	0.24	+1.5
1,574,794	-		PFLU_RS07060	0.24	-1.8
1,574,794	-		PFLU_RS07060	0.24	-2.0
1,574,794	-		PFLU_RS07060	0.24	-0.1
1,574,794	-		PFLU_RS07060	0.24	+0.8
1,574,794	-		PFLU_RS07060	0.24	-1.0
1,574,794	-		PFLU_RS07060	0.24	+1.2
1,574,794	-		PFLU_RS07060	0.24	-0.3
1,574,794	-		PFLU_RS07060	0.24	+1.2
1,574,794	-		PFLU_RS07060	0.24	+0.9
1,574,794	-		PFLU_RS07060	0.24	+1.1
1,574,794	-		PFLU_RS07060	0.24	-0.3
1,574,794	-		PFLU_RS07060	0.24	-1.7
1,574,820	+		PFLU_RS07060	0.26	-0.8
1,574,820	+		PFLU_RS07060	0.26	-1.2
1,574,820	+		PFLU_RS07060	0.26	-2.6
1,574,820	+		PFLU_RS07060	0.26	+0.6
1,574,821	-		PFLU_RS07060	0.27	-0.6
1,574,821	-		PFLU_RS07060	0.27	+0.2
1,574,821	-		PFLU_RS07060	0.27	+1.5
1,574,826	+		PFLU_RS07060	0.27	+1.2
1,574,826	+		PFLU_RS07060	0.27	-0.8
1,574,826	+		PFLU_RS07060	0.27	+1.0
1,574,826	+		PFLU_RS07060	0.27	+1.4
1,574,826	+		PFLU_RS07060	0.27	-1.4
1,574,826	+		PFLU_RS07060	0.27	+0.9
1,574,827	-		PFLU_RS07060	0.27	+2.9
1,574,827	-		PFLU_RS07060	0.27	-1.0
1,574,827	-		PFLU_RS07060	0.27	-0.5
1,574,827	-		PFLU_RS07060	0.27	+0.0
1,574,827	-		PFLU_RS07060	0.27	-0.1
1,574,827	-		PFLU_RS07060	0.27	-0.9
1,574,863	+		PFLU_RS07060	0.30	-1.9
1,574,864	-		PFLU_RS07060	0.30	+2.4
1,574,903	+		PFLU_RS07060	0.33	+0.3
1,574,903	+		PFLU_RS07060	0.33	+1.2
1,574,903	+		PFLU_RS07060	0.33	+0.5
1,574,904	-		PFLU_RS07060	0.34	+2.4
1,574,904	-		PFLU_RS07060	0.34	+1.4
1,574,904	-		PFLU_RS07060	0.34	+1.1
1,574,904	-		PFLU_RS07060	0.34	-0.3
1,574,942	+		PFLU_RS07060	0.37	-1.0
1,574,942	+		PFLU_RS07060	0.37	+0.7
1,574,942	+		PFLU_RS07060	0.37	-2.3
1,574,942	+		PFLU_RS07060	0.37	+0.0
1,574,943	-		PFLU_RS07060	0.37	-2.3
1,574,943	-		PFLU_RS07060	0.37	+0.0
1,574,943	-		PFLU_RS07060	0.37	-0.0
1,575,286	+		PFLU_RS07060	0.65	-0.4
1,575,286	+		PFLU_RS07060	0.65	+1.2
1,575,287	-		PFLU_RS07060	0.66	+1.2
1,575,309	+		PFLU_RS07060	0.67	-2.2
1,575,309	+		PFLU_RS07060	0.67	+2.9
1,575,320	+		PFLU_RS07060	0.68	-1.6
1,575,401	+		PFLU_RS07060	0.75	-1.3
1,575,401	+		PFLU_RS07060	0.75	+2.6
1,575,401	+		PFLU_RS07060	0.75	+0.9
1,575,402	-		PFLU_RS07060	0.75	-0.9
1,575,402	-		PFLU_RS07060	0.75	-1.2
1,575,402	-		PFLU_RS07060	0.75	-0.2
1,575,402	-		PFLU_RS07060	0.75	-1.2
1,575,402	-		PFLU_RS07060	0.75	-2.0
1,575,402	-		PFLU_RS07060	0.75	-0.5
1,575,476	+		PFLU_RS07060	0.81	+2.1
1,575,536	+		PFLU_RS07060	0.86	-1.2
1,575,536	+		PFLU_RS07060	0.86	-1.3
1,575,536	+		PFLU_RS07060	0.86	+0.8
1,575,536	+		PFLU_RS07060	0.86	-0.1
1,575,536	+		PFLU_RS07060	0.86	-1.8
1,575,536	+		PFLU_RS07060	0.86	+1.7
1,575,536	+		PFLU_RS07060	0.86	+1.8
1,575,536	+		PFLU_RS07060	0.86	+2.1
1,575,536	+		PFLU_RS07060	0.86	+0.3
1,575,537	-		PFLU_RS07060	0.87	-1.6
1,575,537	-		PFLU_RS07060	0.87	+2.5
1,575,537	-		PFLU_RS07060	0.87	+5.2
1,575,537	-		PFLU_RS07060	0.87	-0.0
1,575,537	-		PFLU_RS07060	0.87	+2.5
1,575,733	+				-0.1
1,575,733	+				-0.6
1,575,733	+				+0.0
1,575,734	-				+0.2
1,575,734	-				-1.1
1,575,734	-				-0.0
1,575,749	+				-1.8
1,575,750	-				-2.1
1,575,750	-				-0.6
1,575,792	+		PFLU_RS07065	0.14	-2.3
1,575,792	+		PFLU_RS07065	0.14	+0.1
1,575,793	-		PFLU_RS07065	0.15	+0.2
1,575,793	-		PFLU_RS07065	0.15	-1.9
1,575,971	+		PFLU_RS07065	0.73	-0.4
1,575,972	-		PFLU_RS07065	0.73	-1.9
1,575,972	-		PFLU_RS07065	0.73	+1.4
1,576,021	+		PFLU_RS07065	0.89	-0.4
1,576,021	+		PFLU_RS07065	0.89	-0.4
1,576,022	-		PFLU_RS07065	0.90	-1.7
1,576,022	-		PFLU_RS07065	0.90	-1.3
1,576,171	+		PFLU_RS07070	0.18	-0.9
1,576,171	+		PFLU_RS07070	0.18	-2.2
1,576,171	+		PFLU_RS07070	0.18	-1.2
1,576,171	+		PFLU_RS07070	0.18	-1.4
1,576,171	+		PFLU_RS07070	0.18	-1.1
1,576,171	+		PFLU_RS07070	0.18	+1.6
1,576,171	+		PFLU_RS07070	0.18	+1.3
1,576,172	-		PFLU_RS07070	0.18	+0.0
1,576,172	-		PFLU_RS07070	0.18	-0.0
1,576,172	-		PFLU_RS07070	0.18	+1.6
1,576,172	-		PFLU_RS07070	0.18	-2.9
1,576,172	-		PFLU_RS07070	0.18	+0.1
1,576,172	-		PFLU_RS07070	0.18	-0.2
1,576,172	-		PFLU_RS07070	0.18	+2.1
1,576,172	-		PFLU_RS07070	0.18	-0.7
1,576,199	-		PFLU_RS07070	0.23	+0.3
1,576,363	+		PFLU_RS07070	0.54	-1.2
1,576,363	+		PFLU_RS07070	0.54	-1.5
1,576,363	+		PFLU_RS07070	0.54	+1.0
1,576,363	+		PFLU_RS07070	0.54	+1.1
1,576,364	-		PFLU_RS07070	0.55	-0.5
1,576,364	-		PFLU_RS07070	0.55	-0.8
1,576,528	+		PFLU_RS07070	0.86	+1.0
1,576,528	+		PFLU_RS07070	0.86	-0.9
1,576,528	+		PFLU_RS07070	0.86	+0.8
1,576,529	-		PFLU_RS07070	0.86	-2.1
1,576,542	+		PFLU_RS07070	0.89	-0.1
1,576,542	+		PFLU_RS07070	0.89	-0.5
1,576,542	+		PFLU_RS07070	0.89	+1.6
1,576,542	+		PFLU_RS07070	0.89	-1.4
1,576,542	+		PFLU_RS07070	0.89	-0.5
1,576,543	-		PFLU_RS07070	0.89	-0.2
1,576,543	-		PFLU_RS07070	0.89	-0.5
1,576,543	-		PFLU_RS07070	0.89	-0.2
1,576,543	-		PFLU_RS07070	0.89	-1.0
1,576,590	+				+0.2
1,576,590	+				+0.5
1,576,590	+				-0.0
1,576,590	+				-0.5
1,576,590	+				+1.4
1,576,590	+				-1.8
1,576,640	+				+1.4
1,576,640	+				+0.4
1,576,640	+				+0.8
1,576,640	+				+1.2
1,576,640	+				+1.5
1,576,640	+				-2.0
1,576,641	-				-0.9
1,576,641	-				+0.1
1,576,641	-				-0.2
1,576,641	-				-2.4
1,576,641	-				-1.0
1,576,641	-				+0.0
1,576,646	+				+0.9
1,576,664	+				-0.5
1,576,664	+				-0.9
1,576,664	+				-1.2
1,576,670	+				-1.0
1,576,670	+				-0.2
1,576,670	+				+3.1
1,576,670	+				-1.6
1,576,670	+				+0.1
1,576,670	+				-1.2
1,576,670	+				-2.3
1,576,670	+				-0.6
1,576,670	+				-0.9
1,576,670	+				-2.3
1,576,670	+				-2.7
1,576,670	+				+1.3
1,576,670	+				+2.5
1,576,670	+				+1.8
1,576,670	+				-0.4
1,576,670	+				+0.3
1,576,670	+				+0.2
1,576,670	+				-0.4
1,576,670	+				-1.6
1,576,671	-				+0.8
1,576,671	-				+0.2
1,576,671	-				-0.5
1,576,671	-				+0.3
1,576,671	-				-1.1
1,576,671	-				-2.2
1,576,692	+				-0.4
1,576,692	+				+1.3
1,576,692	+				-1.0
1,576,692	+				+0.4
1,576,692	+				-1.8
1,576,692	+				+0.3
1,576,693	-				+2.3
1,576,693	-				-0.7
1,576,693	-				+1.3
1,576,693	-				-0.6
1,576,693	-				-1.3
1,576,693	-				+1.5
1,576,693	-				-1.9
1,576,743	-				+0.2
1,576,835	+		PFLU_RS07075	0.62	-1.1
1,576,835	+		PFLU_RS07075	0.62	+0.8
1,576,835	+		PFLU_RS07075	0.62	-1.2
1,576,835	+		PFLU_RS07075	0.62	-2.2
1,576,836	-		PFLU_RS07075	0.64	+0.1
1,576,836	-		PFLU_RS07075	0.64	-2.0
1,576,836	-		PFLU_RS07075	0.64	-0.4
1,576,836	-		PFLU_RS07075	0.64	-2.5
1,576,836	-		PFLU_RS07075	0.64	-2.2
1,576,836	-		PFLU_RS07075	0.64	-0.0
1,576,843	+		PFLU_RS07075	0.73	-2.1
1,576,843	+		PFLU_RS07075	0.73	+1.1
1,576,843	+		PFLU_RS07075	0.73	-0.7
1,576,843	+		PFLU_RS07075	0.73	-1.0
1,576,843	+		PFLU_RS07075	0.73	+1.4
1,576,844	-		PFLU_RS07075	0.74	-0.7
1,576,844	-		PFLU_RS07075	0.74	+0.3
1,576,844	-		PFLU_RS07075	0.74	-1.0
1,576,844	-		PFLU_RS07075	0.74	+0.8
1,576,844	-		PFLU_RS07075	0.74	-2.4
1,576,849	+		PFLU_RS07075	0.81	+2.2
1,576,849	+		PFLU_RS07075	0.81	-2.8
1,576,849	+		PFLU_RS07075	0.81	-0.9
1,576,849	+		PFLU_RS07075	0.81	-1.0
1,576,849	+		PFLU_RS07075	0.81	+0.2
1,576,850	-		PFLU_RS07075	0.82	+3.2
1,576,850	-		PFLU_RS07075	0.82	-1.3
1,576,854	+		PFLU_RS07075	0.88	-0.6
1,576,854	+		PFLU_RS07075	0.88	-1.4
1,576,854	+		PFLU_RS07075	0.88	+0.5
1,576,854	+		PFLU_RS07075	0.88	+0.5
1,576,854	+		PFLU_RS07075	0.88	+1.6
1,576,854	+		PFLU_RS07075	0.88	-1.2
1,576,854	+		PFLU_RS07075	0.88	+0.4
1,576,854	+		PFLU_RS07075	0.88	-1.5
1,576,855	-				+0.7
1,576,855	-				-0.0
1,576,855	-				-0.5
1,576,855	-				-0.1
1,576,855	-				-1.8
1,576,855	-				+0.3
1,576,855	-				-2.4
1,576,855	-				+0.5
1,576,855	-				+2.0
1,576,857	-				-2.5
1,576,881	+				+0.6
1,576,881	+				+0.7
1,576,881	+				+0.3
1,576,948	+				+1.0
1,576,949	-				-1.2
1,576,949	-				+0.8
1,576,949	-				-1.7
1,576,981	+				+0.2
1,576,982	-				-0.4
1,576,982	-				+1.2
1,576,982	-				-0.0
1,576,982	-				-0.8
1,576,982	-				+0.4