Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01130 and PFLU_RS01135 overlap by 4 nucleotides PFLU_RS01135 and PFLU_RS01140 are separated by 98 nucleotides PFLU_RS01140 and PFLU_RS01145 are separated by 256 nucleotides
PFLU_RS01130: PFLU_RS01130 - amino acid ABC transporter ATP-binding protein, at 247,916 to 248,692
_RS01130
PFLU_RS01135: PFLU_RS01135 - transporter substrate-binding domain-containing protein, at 248,689 to 249,543
_RS01135
PFLU_RS01140: PFLU_RS01140 - AAA family ATPase, at 249,642 to 250,802
_RS01140
PFLU_RS01145: PFLU_RS01145 - efflux RND transporter periplasmic adaptor subunit, at 251,059 to 252,141
_RS01145
Position (kb) 249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 248.700 kb on - strand at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.788 kb on + strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.789 kb on - strand, within PFLU_RS01135 at 248.842 kb on - strand, within PFLU_RS01135 at 248.878 kb on + strand, within PFLU_RS01135 at 248.976 kb on + strand, within PFLU_RS01135 at 248.976 kb on + strand, within PFLU_RS01135 at 249.060 kb on + strand, within PFLU_RS01135 at 249.061 kb on - strand, within PFLU_RS01135 at 249.061 kb on - strand, within PFLU_RS01135 at 249.177 kb on + strand, within PFLU_RS01135 at 249.177 kb on + strand, within PFLU_RS01135 at 249.178 kb on - strand, within PFLU_RS01135 at 249.178 kb on - strand, within PFLU_RS01135 at 249.178 kb on - strand, within PFLU_RS01135 at 249.274 kb on + strand, within PFLU_RS01135 at 249.274 kb on + strand, within PFLU_RS01135 at 249.274 kb on + strand, within PFLU_RS01135 at 249.274 kb on + strand, within PFLU_RS01135 at 249.274 kb on + strand, within PFLU_RS01135 at 249.275 kb on - strand, within PFLU_RS01135 at 249.275 kb on - strand, within PFLU_RS01135 at 249.275 kb on - strand, within PFLU_RS01135 at 249.275 kb on - strand, within PFLU_RS01135 at 249.275 kb on - strand, within PFLU_RS01135 at 249.275 kb on - strand, within PFLU_RS01135 at 249.460 kb on + strand at 249.460 kb on + strand at 249.460 kb on + strand at 249.460 kb on + strand at 249.461 kb on - strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.469 kb on + strand at 249.470 kb on - strand at 249.470 kb on - strand at 249.470 kb on - strand at 249.470 kb on - strand at 249.470 kb on - strand at 249.470 kb on - strand at 249.470 kb on - strand at 249.470 kb on - strand at 249.477 kb on + strand at 249.478 kb on - strand at 249.575 kb on + strand at 249.576 kb on - strand at 249.576 kb on - strand at 249.576 kb on - strand at 249.576 kb on - strand at 249.576 kb on - strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.589 kb on + strand at 249.590 kb on - strand at 249.590 kb on - strand at 249.590 kb on - strand at 249.590 kb on - strand at 249.929 kb on - strand, within PFLU_RS01140 at 249.929 kb on - strand, within PFLU_RS01140 at 249.929 kb on - strand, within PFLU_RS01140 at 249.988 kb on + strand, within PFLU_RS01140 at 249.989 kb on - strand, within PFLU_RS01140 at 250.210 kb on + strand, within PFLU_RS01140 at 250.210 kb on + strand, within PFLU_RS01140 at 250.211 kb on - strand, within PFLU_RS01140 at 250.211 kb on - strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.297 kb on + strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.298 kb on - strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.320 kb on + strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.321 kb on - strand, within PFLU_RS01140 at 250.394 kb on - strand, within PFLU_RS01140 at 250.486 kb on + strand, within PFLU_RS01140 at 250.486 kb on + strand, within PFLU_RS01140 at 250.575 kb on - strand, within PFLU_RS01140 at 250.690 kb on + strand at 250.690 kb on + strand at 250.774 kb on + strand at 250.774 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.811 kb on + strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.812 kb on - strand at 250.817 kb on + strand at 250.818 kb on - strand at 250.818 kb on - strand at 250.868 kb on + strand at 250.869 kb on - strand at 250.869 kb on - strand at 250.869 kb on - strand at 250.869 kb on - strand at 250.869 kb on - strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.004 kb on + strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.005 kb on - strand at 251.020 kb on + strand at 251.020 kb on + strand at 251.021 kb on - strand at 251.071 kb on - strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.082 kb on + strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.083 kb on - strand at 251.099 kb on + strand at 251.449 kb on + strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.450 kb on - strand, within PFLU_RS01145 at 251.467 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.557 kb on + strand, within PFLU_RS01145 at 251.558 kb on - strand, within PFLU_RS01145 at 251.559 kb on + strand, within PFLU_RS01145 at 251.559 kb on + strand, within PFLU_RS01145 at 251.559 kb on + strand, within PFLU_RS01145 at 251.560 kb on - strand, within PFLU_RS01145 at 251.560 kb on - strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.689 kb on + strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.690 kb on - strand, within PFLU_RS01145 at 251.777 kb on + strand, within PFLU_RS01145
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 248,700 - -0.4 248,788 + PFLU_RS01135 0.12 -0.2 248,788 + PFLU_RS01135 0.12 -0.2 248,788 + PFLU_RS01135 0.12 +0.2 248,788 + PFLU_RS01135 0.12 -2.2 248,788 + PFLU_RS01135 0.12 -0.9 248,788 + PFLU_RS01135 0.12 +1.5 248,788 + PFLU_RS01135 0.12 +0.4 248,788 + PFLU_RS01135 0.12 -0.3 248,788 + PFLU_RS01135 0.12 +1.2 248,788 + PFLU_RS01135 0.12 -1.1 248,788 + PFLU_RS01135 0.12 -0.9 248,788 + PFLU_RS01135 0.12 -1.1 248,788 + PFLU_RS01135 0.12 -1.0 248,788 + PFLU_RS01135 0.12 -0.3 248,788 + PFLU_RS01135 0.12 +0.3 248,788 + PFLU_RS01135 0.12 -0.9 248,788 + PFLU_RS01135 0.12 +0.3 248,788 + PFLU_RS01135 0.12 -0.4 248,788 + PFLU_RS01135 0.12 +2.8 248,788 + PFLU_RS01135 0.12 -1.8 248,788 + PFLU_RS01135 0.12 -2.6 248,789 - PFLU_RS01135 0.12 -1.1 248,789 - PFLU_RS01135 0.12 +2.4 248,789 - PFLU_RS01135 0.12 -0.7 248,789 - PFLU_RS01135 0.12 +1.9 248,789 - PFLU_RS01135 0.12 -0.3 248,789 - PFLU_RS01135 0.12 -1.4 248,789 - PFLU_RS01135 0.12 +1.9 248,789 - PFLU_RS01135 0.12 +1.4 248,789 - PFLU_RS01135 0.12 -0.3 248,789 - PFLU_RS01135 0.12 -1.2 248,789 - PFLU_RS01135 0.12 -1.2 248,789 - PFLU_RS01135 0.12 +0.4 248,789 - PFLU_RS01135 0.12 -0.0 248,842 - PFLU_RS01135 0.18 -0.9 248,878 + PFLU_RS01135 0.22 +0.4 248,976 + PFLU_RS01135 0.34 -1.3 248,976 + PFLU_RS01135 0.34 +1.0 249,060 + PFLU_RS01135 0.43 +1.4 249,061 - PFLU_RS01135 0.44 -1.7 249,061 - PFLU_RS01135 0.44 -0.8 249,177 + PFLU_RS01135 0.57 +0.8 249,177 + PFLU_RS01135 0.57 -2.3 249,178 - PFLU_RS01135 0.57 +0.0 249,178 - PFLU_RS01135 0.57 -0.8 249,178 - PFLU_RS01135 0.57 -1.1 249,274 + PFLU_RS01135 0.68 -0.8 249,274 + PFLU_RS01135 0.68 -0.7 249,274 + PFLU_RS01135 0.68 +1.6 249,274 + PFLU_RS01135 0.68 -0.6 249,274 + PFLU_RS01135 0.68 -0.8 249,275 - PFLU_RS01135 0.69 -0.8 249,275 - PFLU_RS01135 0.69 -3.1 249,275 - PFLU_RS01135 0.69 +0.8 249,275 - PFLU_RS01135 0.69 -1.6 249,275 - PFLU_RS01135 0.69 -0.8 249,275 - PFLU_RS01135 0.69 +0.3 249,460 + -1.6 249,460 + -2.2 249,460 + +1.1 249,460 + -1.8 249,461 - -0.7 249,469 + -0.9 249,469 + -2.1 249,469 + -1.2 249,469 + -1.1 249,469 + +0.5 249,469 + -1.3 249,469 + -2.4 249,469 + -2.0 249,469 + +0.8 249,470 - -0.7 249,470 - -0.1 249,470 - +0.8 249,470 - +0.5 249,470 - -1.2 249,470 - +0.4 249,470 - -1.1 249,470 - -2.5 249,477 + +4.8 249,478 - -1.4 249,575 + -0.8 249,576 - -2.4 249,576 - -0.7 249,576 - +0.8 249,576 - +1.0 249,576 - -2.6 249,589 + -1.6 249,589 + +0.5 249,589 + -2.0 249,589 + -0.3 249,589 + +1.3 249,589 + -1.1 249,589 + -0.3 249,589 + -1.3 249,589 + +1.0 249,589 + -0.9 249,590 - +0.7 249,590 - +2.6 249,590 - -1.3 249,590 - +0.3 249,929 - PFLU_RS01140 0.25 +1.2 249,929 - PFLU_RS01140 0.25 +1.9 249,929 - PFLU_RS01140 0.25 -0.7 249,988 + PFLU_RS01140 0.30 +0.2 249,989 - PFLU_RS01140 0.30 +0.9 250,210 + PFLU_RS01140 0.49 -0.9 250,210 + PFLU_RS01140 0.49 -0.1 250,211 - PFLU_RS01140 0.49 +1.0 250,211 - PFLU_RS01140 0.49 +2.2 250,297 + PFLU_RS01140 0.56 -3.0 250,297 + PFLU_RS01140 0.56 -1.8 250,297 + PFLU_RS01140 0.56 -1.0 250,297 + PFLU_RS01140 0.56 -0.3 250,297 + PFLU_RS01140 0.56 -0.3 250,297 + PFLU_RS01140 0.56 +1.7 250,297 + PFLU_RS01140 0.56 +1.2 250,297 + PFLU_RS01140 0.56 -1.0 250,298 - PFLU_RS01140 0.57 -1.5 250,298 - PFLU_RS01140 0.57 -1.1 250,298 - PFLU_RS01140 0.57 +4.3 250,298 - PFLU_RS01140 0.57 -0.8 250,298 - PFLU_RS01140 0.57 +4.1 250,298 - PFLU_RS01140 0.57 +0.5 250,298 - PFLU_RS01140 0.57 -1.2 250,320 + PFLU_RS01140 0.58 -2.7 250,320 + PFLU_RS01140 0.58 -0.6 250,320 + PFLU_RS01140 0.58 -0.8 250,320 + PFLU_RS01140 0.58 +0.7 250,320 + PFLU_RS01140 0.58 -2.7 250,320 + PFLU_RS01140 0.58 -1.6 250,320 + PFLU_RS01140 0.58 -2.0 250,320 + PFLU_RS01140 0.58 +1.3 250,320 + PFLU_RS01140 0.58 -0.4 250,320 + PFLU_RS01140 0.58 -0.3 250,320 + PFLU_RS01140 0.58 +0.6 250,320 + PFLU_RS01140 0.58 +0.4 250,321 - PFLU_RS01140 0.58 -0.1 250,321 - PFLU_RS01140 0.58 +1.3 250,321 - PFLU_RS01140 0.58 -0.6 250,321 - PFLU_RS01140 0.58 -0.7 250,321 - PFLU_RS01140 0.58 -0.1 250,321 - PFLU_RS01140 0.58 -0.1 250,394 - PFLU_RS01140 0.65 +1.0 250,486 + PFLU_RS01140 0.73 -1.4 250,486 + PFLU_RS01140 0.73 -0.6 250,575 - PFLU_RS01140 0.80 -0.8 250,690 + -1.0 250,690 + +1.6 250,774 + +1.6 250,774 + -1.2 250,811 + -0.3 250,811 + +1.4 250,811 + -0.3 250,811 + +1.7 250,811 + +0.0 250,811 + +1.8 250,812 - -1.2 250,812 - +0.9 250,812 - +0.3 250,812 - -0.7 250,812 - -1.2 250,812 - +1.0 250,812 - -0.6 250,817 + +1.2 250,818 - +0.6 250,818 - -0.3 250,868 + +0.7 250,869 - -0.4 250,869 - +0.4 250,869 - +1.6 250,869 - +0.3 250,869 - -0.3 251,004 + +0.4 251,004 + +3.7 251,004 + -1.5 251,004 + +1.7 251,004 + -0.3 251,004 + +0.5 251,005 - +1.6 251,005 - +0.2 251,005 - -1.3 251,005 - +1.3 251,005 - -1.3 251,005 - +1.8 251,005 - +0.2 251,005 - +1.7 251,005 - -1.2 251,005 - +0.3 251,005 - -2.1 251,005 - -0.7 251,005 - -0.8 251,020 + +2.6 251,020 + -2.2 251,021 - +0.6 251,071 - -0.3 251,082 + +0.6 251,082 + +0.6 251,082 + -0.3 251,082 + +1.0 251,082 + -1.3 251,082 + -0.4 251,082 + +0.6 251,082 + -1.9 251,082 + -2.0 251,082 + +0.9 251,083 - -2.4 251,083 - +0.7 251,083 - -1.7 251,083 - +1.3 251,083 - +0.5 251,099 + +1.7 251,449 + PFLU_RS01145 0.36 -2.5 251,450 - PFLU_RS01145 0.36 +1.8 251,450 - PFLU_RS01145 0.36 -0.8 251,450 - PFLU_RS01145 0.36 +0.9 251,450 - PFLU_RS01145 0.36 +0.8 251,467 + PFLU_RS01145 0.38 -0.2 251,557 + PFLU_RS01145 0.46 -0.9 251,557 + PFLU_RS01145 0.46 -0.9 251,557 + PFLU_RS01145 0.46 +1.3 251,558 - PFLU_RS01145 0.46 -0.2 251,559 + PFLU_RS01145 0.46 -0.2 251,559 + PFLU_RS01145 0.46 +0.3 251,559 + PFLU_RS01145 0.46 -1.3 251,560 - PFLU_RS01145 0.46 +0.9 251,560 - PFLU_RS01145 0.46 -1.6 251,689 + PFLU_RS01145 0.58 -1.2 251,689 + PFLU_RS01145 0.58 +1.2 251,689 + PFLU_RS01145 0.58 +3.2 251,689 + PFLU_RS01145 0.58 +0.7 251,689 + PFLU_RS01145 0.58 -1.3 251,689 + PFLU_RS01145 0.58 -1.4 251,689 + PFLU_RS01145 0.58 -0.1 251,690 - PFLU_RS01145 0.58 -0.2 251,690 - PFLU_RS01145 0.58 +0.1 251,690 - PFLU_RS01145 0.58 +0.0 251,690 - PFLU_RS01145 0.58 +0.0 251,690 - PFLU_RS01145 0.58 +0.2 251,690 - PFLU_RS01145 0.58 -1.5 251,777 + PFLU_RS01145 0.66 -0.4
Or see this region's nucleotide sequence