Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12455

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12450 and BBR_RS12455 are separated by 27 nucleotidesBBR_RS12455 and BBR_RS12460 are separated by 161 nucleotides BBR_RS12450: BBR_RS12450 - signal peptidase I, at 542,788 to 543,711 _RS12450 BBR_RS12455: BBR_RS12455 - ribonuclease HII, at 543,739 to 544,596 _RS12455 BBR_RS12460: BBR_RS12460 - LacI family DNA-binding transcriptional regulator, at 544,758 to 545,873 _RS12460 Position (kb) 543 544 545Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 542.753 kb on + strandat 542.760 kb on - strandat 542.760 kb on - strandat 542.771 kb on - strandat 542.779 kb on + strandat 542.789 kb on + strandat 542.796 kb on - strandat 542.796 kb on - strandat 542.798 kb on + strandat 542.821 kb on + strandat 542.821 kb on + strandat 542.848 kb on + strandat 542.850 kb on + strandat 542.850 kb on + strandat 542.856 kb on - strandat 542.875 kb on + strandat 542.875 kb on + strandat 543.000 kb on + strand, within BBR_RS12450at 543.017 kb on + strand, within BBR_RS12450at 543.036 kb on + strand, within BBR_RS12450at 543.102 kb on - strand, within BBR_RS12450at 543.104 kb on + strand, within BBR_RS12450at 543.603 kb on + strand, within BBR_RS12450at 543.667 kb on - strandat 543.669 kb on + strandat 543.669 kb on + strandat 543.669 kb on + strandat 543.669 kb on + strandat 543.680 kb on + strandat 543.752 kb on + strandat 543.754 kb on - strandat 543.793 kb on - strandat 543.834 kb on - strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.982 kb on - strand, within BBR_RS12455at 543.996 kb on + strand, within BBR_RS12455at 543.996 kb on + strand, within BBR_RS12455at 543.996 kb on + strand, within BBR_RS12455at 544.065 kb on + strand, within BBR_RS12455at 544.065 kb on + strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.082 kb on - strand, within BBR_RS12455at 544.082 kb on - strand, within BBR_RS12455at 544.082 kb on - strand, within BBR_RS12455at 544.084 kb on + strand, within BBR_RS12455at 544.084 kb on + strand, within BBR_RS12455at 544.092 kb on - strand, within BBR_RS12455at 544.092 kb on - strand, within BBR_RS12455at 544.101 kb on + strand, within BBR_RS12455at 544.101 kb on + strand, within BBR_RS12455at 544.109 kb on - strand, within BBR_RS12455at 544.136 kb on + strand, within BBR_RS12455at 544.138 kb on - strand, within BBR_RS12455at 544.150 kb on - strand, within BBR_RS12455at 544.154 kb on - strand, within BBR_RS12455at 544.164 kb on - strand, within BBR_RS12455at 544.170 kb on + strand, within BBR_RS12455at 544.176 kb on + strand, within BBR_RS12455at 544.178 kb on - strand, within BBR_RS12455at 544.181 kb on + strand, within BBR_RS12455at 544.181 kb on + strand, within BBR_RS12455at 544.187 kb on + strand, within BBR_RS12455at 544.224 kb on - strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.254 kb on - strand, within BBR_RS12455at 544.256 kb on - strand, within BBR_RS12455at 544.256 kb on - strand, within BBR_RS12455at 544.266 kb on + strand, within BBR_RS12455at 544.272 kb on + strand, within BBR_RS12455at 544.301 kb on + strand, within BBR_RS12455at 544.324 kb on + strand, within BBR_RS12455at 544.326 kb on - strand, within BBR_RS12455at 544.334 kb on + strand, within BBR_RS12455at 544.337 kb on - strand, within BBR_RS12455at 544.380 kb on + strand, within BBR_RS12455at 544.380 kb on + strand, within BBR_RS12455at 544.380 kb on + strand, within BBR_RS12455at 544.381 kb on + strand, within BBR_RS12455at 544.388 kb on - strand, within BBR_RS12455at 544.395 kb on + strand, within BBR_RS12455at 544.398 kb on - strand, within BBR_RS12455at 544.403 kb on - strand, within BBR_RS12455at 544.415 kb on + strand, within BBR_RS12455at 544.425 kb on - strand, within BBR_RS12455at 544.448 kb on + strand, within BBR_RS12455at 544.460 kb on + strand, within BBR_RS12455at 544.460 kb on + strand, within BBR_RS12455at 544.466 kb on - strand, within BBR_RS12455at 544.499 kb on - strand, within BBR_RS12455at 544.503 kb on - strand, within BBR_RS12455at 544.506 kb on + strand, within BBR_RS12455at 544.512 kb on + strandat 544.521 kb on - strandat 544.521 kb on - strandat 544.554 kb on - strandat 544.564 kb on + strandat 544.570 kb on - strandat 544.570 kb on - strandat 544.598 kb on - strandat 544.608 kb on + strandat 544.608 kb on + strandat 544.611 kb on - strandat 544.624 kb on + strandat 544.713 kb on - strandat 544.725 kb on + strandat 544.739 kb on + strandat 544.746 kb on + strandat 544.805 kb on + strandat 544.833 kb on + strandat 544.833 kb on + strandat 544.841 kb on - strandat 544.866 kb on + strandat 544.866 kb on - strandat 544.868 kb on + strandat 544.868 kb on + strandat 544.895 kb on - strand, within BBR_RS12460at 544.900 kb on + strand, within BBR_RS12460at 544.918 kb on - strand, within BBR_RS12460at 544.918 kb on - strand, within BBR_RS12460at 544.933 kb on - strand, within BBR_RS12460at 544.955 kb on - strand, within BBR_RS12460at 544.995 kb on - strand, within BBR_RS12460at 545.044 kb on + strand, within BBR_RS12460at 545.044 kb on + strand, within BBR_RS12460at 545.052 kb on - strand, within BBR_RS12460at 545.054 kb on + strand, within BBR_RS12460at 545.083 kb on - strand, within BBR_RS12460at 545.096 kb on + strand, within BBR_RS12460at 545.096 kb on + strand, within BBR_RS12460at 545.122 kb on + strand, within BBR_RS12460at 545.132 kb on + strand, within BBR_RS12460at 545.137 kb on + strand, within BBR_RS12460at 545.138 kb on - strand, within BBR_RS12460at 545.177 kb on - strand, within BBR_RS12460at 545.177 kb on - strand, within BBR_RS12460at 545.186 kb on + strand, within BBR_RS12460at 545.192 kb on - strand, within BBR_RS12460at 545.268 kb on - strand, within BBR_RS12460at 545.291 kb on + strand, within BBR_RS12460at 545.303 kb on + strand, within BBR_RS12460at 545.313 kb on + strand, within BBR_RS12460at 545.318 kb on + strand, within BBR_RS12460at 545.320 kb on + strand, within BBR_RS12460at 545.338 kb on - strand, within BBR_RS12460at 545.345 kb on - strand, within BBR_RS12460at 545.371 kb on - strand, within BBR_RS12460at 545.371 kb on - strand, within BBR_RS12460at 545.375 kb on + strand, within BBR_RS12460at 545.378 kb on + strand, within BBR_RS12460at 545.419 kb on + strand, within BBR_RS12460at 545.420 kb on + strand, within BBR_RS12460at 545.469 kb on + strand, within BBR_RS12460at 545.477 kb on + strand, within BBR_RS12460at 545.479 kb on + strand, within BBR_RS12460at 545.483 kb on + strand, within BBR_RS12460at 545.547 kb on + strand, within BBR_RS12460at 545.563 kb on + strand, within BBR_RS12460at 545.563 kb on + strand, within BBR_RS12460

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse3; day2
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542,753 + +0.7
542,760 - -0.2
542,760 - -0.7
542,771 - -1.6
542,779 + -0.4
542,789 + -2.5
542,796 - +0.1
542,796 - +0.5
542,798 + +0.9
542,821 + -2.3
542,821 + -3.2
542,848 + -0.7
542,850 + +1.0
542,850 + -3.1
542,856 - -1.8
542,875 + -0.6
542,875 + -2.2
543,000 + BBR_RS12450 0.23 -2.9
543,017 + BBR_RS12450 0.25 -2.3
543,036 + BBR_RS12450 0.27 -2.2
543,102 - BBR_RS12450 0.34 -1.8
543,104 + BBR_RS12450 0.34 -2.0
543,603 + BBR_RS12450 0.88 -0.1
543,667 - +0.7
543,669 + +0.6
543,669 + -0.8
543,669 + -0.3
543,669 + +0.7
543,680 + +0.4
543,752 + -0.3
543,754 - -1.8
543,793 - +0.5
543,834 - BBR_RS12455 0.11 +1.1
543,964 + BBR_RS12455 0.26 -1.7
543,964 + BBR_RS12455 0.26 -0.4
543,964 + BBR_RS12455 0.26 -2.5
543,964 + BBR_RS12455 0.26 -2.1
543,964 + BBR_RS12455 0.26 +2.6
543,982 - BBR_RS12455 0.28 +2.6
543,996 + BBR_RS12455 0.30 +2.2
543,996 + BBR_RS12455 0.30 +0.7
543,996 + BBR_RS12455 0.30 -3.2
544,065 + BBR_RS12455 0.38 -1.4
544,065 + BBR_RS12455 0.38 +2.1
544,073 - BBR_RS12455 0.39 -0.6
544,073 - BBR_RS12455 0.39 -1.7
544,073 - BBR_RS12455 0.39 +1.3
544,073 - BBR_RS12455 0.39 -2.2
544,082 - BBR_RS12455 0.40 +0.3
544,082 - BBR_RS12455 0.40 -2.3
544,082 - BBR_RS12455 0.40 -1.4
544,084 + BBR_RS12455 0.40 -0.3
544,084 + BBR_RS12455 0.40 -2.0
544,092 - BBR_RS12455 0.41 -2.8
544,092 - BBR_RS12455 0.41 +0.7
544,101 + BBR_RS12455 0.42 +1.0
544,101 + BBR_RS12455 0.42 +0.9
544,109 - BBR_RS12455 0.43 +0.8
544,136 + BBR_RS12455 0.46 -1.3
544,138 - BBR_RS12455 0.47 -2.2
544,150 - BBR_RS12455 0.48 +1.4
544,154 - BBR_RS12455 0.48 +0.8
544,164 - BBR_RS12455 0.50 +0.3
544,170 + BBR_RS12455 0.50 +1.2
544,176 + BBR_RS12455 0.51 -2.0
544,178 - BBR_RS12455 0.51 -2.3
544,181 + BBR_RS12455 0.52 -2.5
544,181 + BBR_RS12455 0.52 +0.3
544,187 + BBR_RS12455 0.52 -0.7
544,224 - BBR_RS12455 0.57 +1.1
544,232 + BBR_RS12455 0.57 +1.5
544,232 + BBR_RS12455 0.57 +1.6
544,232 + BBR_RS12455 0.57 -1.0
544,232 + BBR_RS12455 0.57 -0.5
544,232 + BBR_RS12455 0.57 +0.3
544,232 + BBR_RS12455 0.57 -2.9
544,254 - BBR_RS12455 0.60 +0.2
544,256 - BBR_RS12455 0.60 +1.0
544,256 - BBR_RS12455 0.60 +0.3
544,266 + BBR_RS12455 0.61 -2.7
544,272 + BBR_RS12455 0.62 +0.9
544,301 + BBR_RS12455 0.66 +2.4
544,324 + BBR_RS12455 0.68 -1.3
544,326 - BBR_RS12455 0.68 -1.4
544,334 + BBR_RS12455 0.69 +0.8
544,337 - BBR_RS12455 0.70 -0.2
544,380 + BBR_RS12455 0.75 -0.1
544,380 + BBR_RS12455 0.75 +0.1
544,380 + BBR_RS12455 0.75 -2.0
544,381 + BBR_RS12455 0.75 -2.4
544,388 - BBR_RS12455 0.76 +0.6
544,395 + BBR_RS12455 0.76 -0.2
544,398 - BBR_RS12455 0.77 -0.4
544,403 - BBR_RS12455 0.77 +2.6
544,415 + BBR_RS12455 0.79 -1.5
544,425 - BBR_RS12455 0.80 +1.2
544,448 + BBR_RS12455 0.83 +1.7
544,460 + BBR_RS12455 0.84 +1.0
544,460 + BBR_RS12455 0.84 -0.4
544,466 - BBR_RS12455 0.85 +1.4
544,499 - BBR_RS12455 0.89 +2.0
544,503 - BBR_RS12455 0.89 -2.7
544,506 + BBR_RS12455 0.89 -1.6
544,512 + +0.9
544,521 - +1.1
544,521 - -2.7
544,554 - +1.1
544,564 + -0.0
544,570 - +3.0
544,570 - -0.6
544,598 - +2.2
544,608 + +0.4
544,608 + +0.6
544,611 - +0.0
544,624 + -4.0
544,713 - +0.8
544,725 + +0.1
544,739 + +1.9
544,746 + -1.2
544,805 + -0.5
544,833 + +1.2
544,833 + +2.3
544,841 - -1.7
544,866 + -0.2
544,866 - -0.9
544,868 + +0.6
544,868 + -2.0
544,895 - BBR_RS12460 0.12 +0.3
544,900 + BBR_RS12460 0.13 -0.0
544,918 - BBR_RS12460 0.14 -1.5
544,918 - BBR_RS12460 0.14 -1.9
544,933 - BBR_RS12460 0.16 +0.9
544,955 - BBR_RS12460 0.18 +0.1
544,995 - BBR_RS12460 0.21 -1.0
545,044 + BBR_RS12460 0.26 -2.5
545,044 + BBR_RS12460 0.26 -1.8
545,052 - BBR_RS12460 0.26 -0.9
545,054 + BBR_RS12460 0.27 +0.3
545,083 - BBR_RS12460 0.29 +0.2
545,096 + BBR_RS12460 0.30 -2.2
545,096 + BBR_RS12460 0.30 +1.5
545,122 + BBR_RS12460 0.33 -2.8
545,132 + BBR_RS12460 0.34 -2.5
545,137 + BBR_RS12460 0.34 -1.9
545,138 - BBR_RS12460 0.34 +1.4
545,177 - BBR_RS12460 0.38 +2.1
545,177 - BBR_RS12460 0.38 -2.0
545,186 + BBR_RS12460 0.38 +0.2
545,192 - BBR_RS12460 0.39 -1.6
545,268 - BBR_RS12460 0.46 -3.1
545,291 + BBR_RS12460 0.48 +0.4
545,303 + BBR_RS12460 0.49 -1.4
545,313 + BBR_RS12460 0.50 +1.2
545,318 + BBR_RS12460 0.50 -2.0
545,320 + BBR_RS12460 0.50 +0.7
545,338 - BBR_RS12460 0.52 +2.0
545,345 - BBR_RS12460 0.53 -0.3
545,371 - BBR_RS12460 0.55 -1.1
545,371 - BBR_RS12460 0.55 -0.7
545,375 + BBR_RS12460 0.55 -2.7
545,378 + BBR_RS12460 0.56 -0.6
545,419 + BBR_RS12460 0.59 -2.3
545,420 + BBR_RS12460 0.59 +4.6
545,469 + BBR_RS12460 0.64 -0.6
545,477 + BBR_RS12460 0.64 +1.9
545,479 + BBR_RS12460 0.65 +1.5
545,483 + BBR_RS12460 0.65 -0.1
545,547 + BBR_RS12460 0.71 +0.6
545,563 + BBR_RS12460 0.72 +2.2
545,563 + BBR_RS12460 0.72 -0.1

Or see this region's nucleotide sequence