Experiment: BHIS with Cefoxitin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3928 and BT3929 are separated by 29 nucleotides BT3929 and BT3930 are separated by 126 nucleotides BT3930 and BT3931 are separated by 7 nucleotides
BT3928: BT3928 - hypothetical protein (NCBI ptt file), at 5,101,644 to 5,102,675
BT3928
BT3929: BT3929 - triosephosphate isomerase (NCBI ptt file), at 5,102,705 to 5,103,463
BT3929
BT3930: BT3930 - hypothetical protein (NCBI ptt file), at 5,103,590 to 5,104,039
BT3930
BT3931: BT3931 - GTP cyclohydrolase I (NCBI ptt file), at 5,104,047 to 5,104,637
BT3931
Position (kb) 5102
5103
5104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5101.733 kb on + strand at 5101.762 kb on + strand, within BT3928 at 5101.851 kb on + strand, within BT3928 at 5101.858 kb on + strand, within BT3928 at 5101.884 kb on + strand, within BT3928 at 5101.986 kb on + strand, within BT3928 at 5101.986 kb on + strand, within BT3928 at 5102.033 kb on + strand, within BT3928 at 5102.189 kb on + strand, within BT3928 at 5102.189 kb on + strand, within BT3928 at 5102.189 kb on + strand, within BT3928 at 5102.189 kb on + strand, within BT3928 at 5102.213 kb on + strand, within BT3928 at 5102.257 kb on + strand, within BT3928 at 5102.259 kb on + strand, within BT3928 at 5102.259 kb on + strand, within BT3928 at 5102.259 kb on + strand, within BT3928 at 5102.259 kb on + strand, within BT3928 at 5102.265 kb on + strand, within BT3928 at 5102.292 kb on + strand, within BT3928 at 5102.300 kb on + strand, within BT3928 at 5102.323 kb on + strand, within BT3928 at 5102.325 kb on + strand, within BT3928 at 5102.482 kb on + strand, within BT3928 at 5102.539 kb on + strand, within BT3928 at 5102.543 kb on + strand, within BT3928 at 5102.553 kb on + strand, within BT3928 at 5102.679 kb on + strand at 5103.499 kb on + strand at 5103.502 kb on + strand at 5104.037 kb on + strand at 5104.037 kb on + strand at 5104.037 kb on + strand at 5104.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Cefoxitin 0.025 mM remove 5,101,733 + -1.2 5,101,762 + BT3928 0.11 -2.3 5,101,851 + BT3928 0.20 -3.5 5,101,858 + BT3928 0.21 +1.9 5,101,884 + BT3928 0.23 -1.1 5,101,986 + BT3928 0.33 -0.9 5,101,986 + BT3928 0.33 -3.4 5,102,033 + BT3928 0.38 +2.7 5,102,189 + BT3928 0.53 -3.1 5,102,189 + BT3928 0.53 -2.1 5,102,189 + BT3928 0.53 -0.1 5,102,189 + BT3928 0.53 -0.5 5,102,213 + BT3928 0.55 -0.1 5,102,257 + BT3928 0.59 +1.0 5,102,259 + BT3928 0.60 -1.9 5,102,259 + BT3928 0.60 -0.8 5,102,259 + BT3928 0.60 -0.1 5,102,259 + BT3928 0.60 -2.4 5,102,265 + BT3928 0.60 -2.1 5,102,292 + BT3928 0.63 -2.1 5,102,300 + BT3928 0.64 -1.7 5,102,323 + BT3928 0.66 -0.1 5,102,325 + BT3928 0.66 +0.9 5,102,482 + BT3928 0.81 -1.3 5,102,539 + BT3928 0.87 -0.1 5,102,543 + BT3928 0.87 -3.1 5,102,553 + BT3928 0.88 -2.5 5,102,679 + +1.9 5,103,499 + -2.4 5,103,502 + -2.1 5,104,037 + -2.4 5,104,037 + -1.1 5,104,037 + -1.3 5,104,043 + -2.9
Or see this region's nucleotide sequence