Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3082

Experiment: BHIS with Cefoxitin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Cefoxitin 0.025 mM
3,905,649	+		BT3080	0.50	-1.0
3,905,689	-		BT3080	0.54	-1.6
3,905,693	+		BT3080	0.55	-2.2
3,905,852	-		BT3080	0.71	-1.6
3,905,891	+		BT3080	0.76	-2.9
3,905,985	+		BT3080	0.85	-0.5
3,906,050	+				-1.5
3,906,050	+				-2.7
3,906,056	-				-0.7
3,906,059	+				-1.0
3,906,060	-				-1.7
3,906,060	-				-1.1
3,906,060	-				-0.2
3,906,083	+				-4.2
3,906,084	-				-1.0
3,906,123	-				+0.8
3,906,124	+				-2.3
3,906,124	+				+0.7
3,906,125	-				-1.0
3,906,197	-				-1.7
3,906,198	+				-3.5
3,906,199	-				-2.7
3,906,199	-				-0.4
3,906,235	-				-1.6
3,906,235	-				-0.4
3,906,251	+				-0.2
3,906,252	-				-2.1
3,906,290	-		BT3081	0.12	-1.2
3,906,295	+		BT3081	0.13	-1.5
3,906,340	+		BT3081	0.26	-1.2
3,906,340	+		BT3081	0.26	-1.7
3,906,340	+		BT3081	0.26	+2.2
3,906,340	+		BT3081	0.26	-3.2
3,906,340	+		BT3081	0.26	+0.8
3,906,340	+		BT3081	0.26	+1.4
3,906,340	+		BT3081	0.26	-0.4
3,906,341	-		BT3081	0.27	-2.0
3,906,341	-		BT3081	0.27	+1.8
3,906,341	-		BT3081	0.27	-0.2
3,906,344	+		BT3081	0.27	-0.6
3,906,348	-				-0.2
3,906,368	-		BT3081	0.35	-1.2
3,906,368	-		BT3081	0.35	-1.7
3,906,368	-		BT3081	0.35	-1.7
3,906,416	+		BT3081	0.49	-1.7
3,906,416	+		BT3081	0.49	-0.9
3,906,416	+		BT3081	0.49	-2.5
3,906,434	+		BT3081	0.54	-1.2
3,906,451	-		BT3081	0.59	-0.2
3,906,451	-		BT3081	0.59	-3.8
3,906,592	-				-1.2
3,906,608	-				+0.8
3,906,759	+				+0.8
3,906,759	+				-1.9
3,906,759	+				-0.9
3,906,760	-				-1.2
3,906,776	-				-1.9
3,906,779	+				-0.2
3,906,779	+				-0.2
3,906,779	+				-2.5
3,906,788	-				+0.6
3,906,804	+				-0.7
3,906,805	-				-1.0
3,906,808	+				-2.9
3,906,978	+		BT3082	0.20	-0.7
3,906,978	+		BT3082	0.20	-2.2
3,906,978	+		BT3082	0.20	-3.1
3,906,979	-		BT3082	0.20	-1.2
3,907,042	+		BT3082	0.24	-2.5
3,907,043	-		BT3082	0.24	-0.9
3,907,043	-		BT3082	0.24	-1.9
3,907,043	-		BT3082	0.24	-1.1
3,907,102	+		BT3082	0.28	-2.2
3,907,178	+		BT3082	0.32	-3.2
3,907,187	-		BT3082	0.33	-2.5
3,907,187	-		BT3082	0.33	-0.2
3,907,233	+		BT3082	0.36	-2.7
3,907,233	+		BT3082	0.36	+0.8
3,907,237	+		BT3082	0.36	-1.5
3,907,238	-		BT3082	0.36	-3.5
3,907,249	+		BT3082	0.37	-2.7
3,907,250	-		BT3082	0.37	-1.2
3,907,250	-				-0.2
3,907,258	-		BT3082	0.37	-2.6
3,907,280	+		BT3082	0.39	+1.4
3,907,281	-		BT3082	0.39	-1.8
3,907,301	+		BT3082	0.40	+1.8
3,907,301	+		BT3082	0.40	-0.2
3,907,302	-		BT3082	0.40	-2.1
3,907,302	-		BT3082	0.40	-2.0
3,907,306	+		BT3082	0.40	-0.6
3,907,306	+		BT3082	0.40	-1.9
3,907,306	+		BT3082	0.40	+1.2
3,907,309	-		BT3082	0.40	-2.7
3,907,309	-		BT3082	0.40	-1.9
3,907,312	+		BT3082	0.41	+0.8
3,907,312	+		BT3082	0.41	-2.5
3,907,313	-		BT3082	0.41	-2.7
3,907,313	-		BT3082	0.41	-2.7
3,907,326	+		BT3082	0.41	-0.7
3,907,326	+		BT3082	0.41	-1.2
3,907,326	+		BT3082	0.41	-1.7
3,907,327	-		BT3082	0.41	-2.1
3,907,327	-		BT3082	0.41	-1.7
3,907,417	-		BT3082	0.47	-1.7
3,907,446	+		BT3082	0.49	-1.4
3,907,481	+		BT3082	0.51	-0.6
3,907,579	-		BT3082	0.57	-0.2
3,907,592	-		BT3082	0.58	-2.5
3,907,592	-		BT3082	0.58	-2.7
3,907,611	+		BT3082	0.59	-1.5
3,907,611	+		BT3082	0.59	-1.5
3,907,611	+		BT3082	0.59	-0.5
3,907,612	-		BT3082	0.59	-1.7
3,907,617	-		BT3082	0.59	-2.7
3,907,699	+		BT3082	0.64	+2.6
3,907,702	+		BT3082	0.64	-3.0
3,907,702	+		BT3082	0.64	-0.2
3,907,703	-		BT3082	0.64	-1.7
3,907,703	-		BT3082	0.64	-3.1
3,907,707	+		BT3082	0.65	-2.7
3,907,756	-		BT3082	0.68	-1.2
3,907,784	+		BT3082	0.69	-2.0
3,907,820	-		BT3082	0.71	-3.3
3,907,878	+		BT3082	0.75	-3.0
3,907,881	+		BT3082	0.75	-1.0
3,907,882	-		BT3082	0.75	-2.3
3,907,882	-		BT3082	0.75	+0.3
3,907,956	+		BT3082	0.80	-1.2
3,907,956	+		BT3082	0.80	-2.7
3,907,992	+		BT3082	0.82	+0.8
3,908,080	-		BT3082	0.87	+1.0
3,908,117	+		BT3082	0.89	-0.6
3,908,136	-				-1.7
3,908,155	+				-1.8
3,908,191	-				-2.7
3,908,250	-				+0.3
3,908,250	-				-0.5
3,908,263	+				+0.3
3,908,268	-				-1.2
3,908,268	-				-2.3
3,908,291	-				-1.9
3,908,295	-				-0.9
3,908,304	-				+0.8
3,908,306	+				-3.6
3,908,313	+				-1.1
3,908,338	-				-0.2
3,908,353	+				-3.0
3,908,358	+				-0.2
3,908,468	-				-3.2
3,908,501	+				+0.7
3,908,510	-				-3.4
3,908,513	-				-1.8
3,908,513	-				-2.7
3,908,603	-		BT3083	0.11	+0.6
3,908,603	-		BT3083	0.11	-1.9
3,908,609	+		BT3083	0.12	-0.2
3,908,609	+		BT3083	0.12	-1.4
3,908,610	-		BT3083	0.12	-2.2
3,908,611	+		BT3083	0.12	-4.6
3,908,644	+		BT3083	0.14	-1.2
3,908,645	-		BT3083	0.14	-2.2
3,908,651	-		BT3083	0.15	+0.3
3,908,671	-		BT3083	0.16	-1.7
3,908,741	+		BT3083	0.22	-1.6
3,908,741	+		BT3083	0.22	-2.8
3,908,767	+		BT3083	0.24	-1.5
3,908,767	+		BT3083	0.24	-2.7
3,908,768	-		BT3083	0.24	-0.3
3,908,769	+		BT3083	0.24	-2.5
3,908,776	+		BT3083	0.24	-2.4
3,908,777	-		BT3083	0.24	-2.1
3,908,796	-		BT3083	0.26	-1.9
3,908,840	+		BT3083	0.29	-1.5
3,908,847	-		BT3083	0.30	+0.2
3,908,860	+		BT3083	0.31	+2.2
3,908,952	-		BT3083	0.38	-2.9
3,908,957	-		BT3083	0.38	-2.2
3,909,053	+		BT3083	0.45	-1.2
3,909,054	-		BT3083	0.45	-2.3
3,909,054	-		BT3083	0.45	+0.4
3,909,057	+		BT3083	0.46	-2.1
3,909,057	+		BT3083	0.46	-0.2
3,909,058	-		BT3083	0.46	-1.2
3,909,079	+		BT3083	0.47	-0.9
3,909,085	+		BT3083	0.48	+0.3
3,909,086	-		BT3083	0.48	-4.0
3,909,086	-		BT3083	0.48	-0.2
3,909,089	-		BT3083	0.48	-3.5
3,909,111	+		BT3083	0.50	+0.6
3,909,112	-		BT3083	0.50	-0.2
3,909,112	-		BT3083	0.50	-0.7
3,909,122	+		BT3083	0.50	-1.3
3,909,123	-				+0.1
3,909,125	-				-0.2
3,909,193	+		BT3083	0.56	-3.3
3,909,205	+		BT3083	0.57	-1.2
3,909,206	-		BT3083	0.57	-0.9
3,909,206	-		BT3083	0.57	-2.1
3,909,206	-		BT3083	0.57	-2.2
3,909,263	+		BT3083	0.61	-1.7
3,909,263	+		BT3083	0.61	-1.8
3,909,283	+		BT3083	0.63	+1.6
3,909,283	+		BT3083	0.63	-1.0
3,909,284	-		BT3083	0.63	-3.2
3,909,285	+		BT3083	0.63	-0.2
3,909,286	-		BT3083	0.63	-0.7