Experiment: MoLS4 with L-Glycine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0090 and katA are separated by 136 nucleotides katA and DVUA0092 are separated by 218 nucleotides DVUA0092 and DVUA0093 are separated by 188 nucleotides
DVUA0090: DVUA0090 - membrane protein, putative (TIGR), at 122,486 to 123,358
DVUA0090
DVUA0091: katA - catalase (TIGR), at 123,495 to 124,952
katA
DVUA0092: DVUA0092 - hypothetical protein (TIGR), at 125,171 to 125,650
DVUA0092
DVUA0093: DVUA0093 - chromate transport family protein (TIGR), at 125,839 to 127,176
DVUA0093
Position (kb)
123
124
125 Strain fitness (log2 ratio)
-2
-1
0
1 at 122.498 kb on + strand at 122.506 kb on - strand at 122.506 kb on - strand at 122.556 kb on + strand at 122.589 kb on - strand, within DVUA0090 at 122.615 kb on - strand, within DVUA0090 at 122.818 kb on - strand, within DVUA0090 at 122.878 kb on - strand, within DVUA0090 at 122.905 kb on + strand, within DVUA0090 at 122.927 kb on + strand, within DVUA0090 at 122.935 kb on - strand, within DVUA0090 at 123.010 kb on + strand, within DVUA0090 at 123.020 kb on + strand, within DVUA0090 at 123.127 kb on + strand, within DVUA0090 at 123.255 kb on - strand, within DVUA0090 at 123.257 kb on - strand, within DVUA0090 at 123.262 kb on - strand, within DVUA0090 at 123.469 kb on + strand at 123.775 kb on - strand, within katA at 123.872 kb on + strand, within katA at 123.967 kb on - strand, within katA at 124.024 kb on - strand, within katA at 124.026 kb on + strand, within katA at 124.109 kb on + strand, within katA at 124.224 kb on + strand, within katA at 124.318 kb on - strand, within katA at 124.326 kb on - strand, within katA at 124.395 kb on + strand, within katA at 124.552 kb on - strand, within katA at 124.622 kb on + strand, within katA at 124.627 kb on - strand, within katA at 124.731 kb on + strand, within katA at 124.928 kb on - strand at 124.951 kb on + strand at 124.954 kb on - strand at 125.054 kb on + strand at 125.054 kb on + strand at 125.075 kb on - strand at 125.348 kb on + strand, within DVUA0092 at 125.417 kb on - strand, within DVUA0092 at 125.424 kb on + strand, within DVUA0092 at 125.520 kb on - strand, within DVUA0092 at 125.597 kb on - strand, within DVUA0092 at 125.629 kb on - strand at 125.694 kb on + strand at 125.717 kb on + strand at 125.725 kb on - strand at 125.762 kb on + strand at 125.787 kb on - strand at 125.791 kb on + strand at 125.809 kb on - strand at 125.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine as nutrient 10mM remove 122,498 + -0.1 122,506 - -0.9 122,506 - +0.2 122,556 + -0.4 122,589 - DVUA0090 0.12 -0.2 122,615 - DVUA0090 0.15 -0.0 122,818 - DVUA0090 0.38 +0.4 122,878 - DVUA0090 0.45 -0.3 122,905 + DVUA0090 0.48 -0.8 122,927 + DVUA0090 0.51 -0.2 122,935 - DVUA0090 0.51 -1.9 123,010 + DVUA0090 0.60 -0.3 123,020 + DVUA0090 0.61 +1.3 123,127 + DVUA0090 0.73 +0.4 123,255 - DVUA0090 0.88 +0.5 123,257 - DVUA0090 0.88 +0.2 123,262 - DVUA0090 0.89 -0.5 123,469 + -0.4 123,775 - katA DVUA0091 0.19 +0.8 123,872 + katA DVUA0091 0.26 +0.1 123,967 - katA DVUA0091 0.32 +0.5 124,024 - katA DVUA0091 0.36 +0.0 124,026 + katA DVUA0091 0.36 -0.4 124,109 + katA DVUA0091 0.42 -0.3 124,224 + katA DVUA0091 0.50 +0.0 124,318 - katA DVUA0091 0.56 -0.5 124,326 - katA DVUA0091 0.57 -0.4 124,395 + katA DVUA0091 0.62 +0.0 124,552 - katA DVUA0091 0.72 +1.2 124,622 + katA DVUA0091 0.77 -0.3 124,627 - katA DVUA0091 0.78 -0.2 124,731 + katA DVUA0091 0.85 -0.6 124,928 - +0.7 124,951 + -0.2 124,954 - +0.8 125,054 + -0.2 125,054 + +1.2 125,075 - -0.1 125,348 + DVUA0092 0.37 +0.1 125,417 - DVUA0092 0.51 -0.9 125,424 + DVUA0092 0.53 -0.3 125,520 - DVUA0092 0.73 -0.4 125,597 - DVUA0092 0.89 +0.1 125,629 - -0.0 125,694 + +1.0 125,717 + -1.0 125,725 - -0.3 125,762 + -0.4 125,787 - -0.3 125,791 + -0.1 125,809 - +0.8 125,861 + +0.0
Or see this region's nucleotide sequence