Experiment: MoLS4 with L-Glycine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt valS and DVU0733 are separated by 116 nucleotides DVU0733 and cysG-1 are separated by 234 nucleotides cysG-1 and DVU0735 are separated by 707 nucleotides
DVU0732: valS - valyl-tRNA synthetase (TIGR), at 816,473 to 819,127
valS
DVU0733: DVU0733 - conserved hypothetical protein (TIGR), at 819,244 to 819,732
DVU0733
DVU0734: cysG-1 - uroporphyrinogen III synthase/methyltransferase (TIGR), at 819,967 to 821,478
cysG-1
DVU0735: DVU0735 - MOSC domain protein (TIGR), at 822,186 to 822,620
DVU0735
Position (kb) 819
820
821
822 Strain fitness (log2 ratio) -1
0
1 at 819.137 kb on - strand at 819.251 kb on - strand at 819.361 kb on + strand, within DVU0733 at 819.449 kb on - strand, within DVU0733 at 819.485 kb on - strand, within DVU0733 at 819.497 kb on - strand, within DVU0733 at 819.541 kb on - strand, within DVU0733 at 819.546 kb on - strand, within DVU0733 at 819.583 kb on - strand, within DVU0733 at 819.584 kb on + strand, within DVU0733 at 819.589 kb on + strand, within DVU0733 at 819.601 kb on + strand, within DVU0733 at 819.601 kb on + strand, within DVU0733 at 819.751 kb on - strand at 819.866 kb on + strand at 819.866 kb on + strand at 819.866 kb on + strand at 819.874 kb on - strand at 821.591 kb on + strand at 821.630 kb on + strand at 821.833 kb on - strand at 822.101 kb on - strand at 822.123 kb on + strand at 822.189 kb on + strand at 822.194 kb on + strand at 822.194 kb on + strand at 822.194 kb on + strand at 822.194 kb on + strand at 822.202 kb on - strand at 822.202 kb on - strand at 822.218 kb on + strand at 822.250 kb on + strand, within DVU0735 at 822.250 kb on + strand, within DVU0735 at 822.258 kb on - strand, within DVU0735 at 822.258 kb on - strand, within DVU0735 at 822.258 kb on - strand, within DVU0735
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine as nutrient 10mM remove 819,137 - +0.6 819,251 - -1.7 819,361 + DVU0733 0.24 +0.9 819,449 - DVU0733 0.42 +0.1 819,485 - DVU0733 0.49 +0.2 819,497 - DVU0733 0.52 -0.8 819,541 - DVU0733 0.61 -0.0 819,546 - DVU0733 0.62 -0.9 819,583 - DVU0733 0.69 +0.7 819,584 + DVU0733 0.70 -0.5 819,589 + DVU0733 0.71 -0.1 819,601 + DVU0733 0.73 +0.3 819,601 + DVU0733 0.73 -0.7 819,751 - +0.4 819,866 + -0.1 819,866 + -0.3 819,866 + +0.2 819,874 - +0.5 821,591 + -0.8 821,630 + -0.2 821,833 - +0.0 822,101 - -0.1 822,123 + -0.8 822,189 + +0.2 822,194 + -0.1 822,194 + +1.0 822,194 + -0.6 822,194 + -0.4 822,202 - -0.2 822,202 - +0.2 822,218 + -1.7 822,250 + DVU0735 0.15 -0.2 822,250 + DVU0735 0.15 +0.5 822,258 - DVU0735 0.17 -0.8 822,258 - DVU0735 0.17 -0.2 822,258 - DVU0735 0.17 +0.8
Or see this region's nucleotide sequence