Experiment: MoLS4 with L-Glycine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0645 and cobI are separated by 209 nucleotides cobI and DVU0647 are separated by 1 nucleotides DVU0647 and fepC overlap by 23 nucleotides
DVU0645: DVU0645 - methyl-accepting chemotaxis protein (TIGR), at 714,819 to 716,858
DVU0645
DVU0646: cobI - precorrin-2 C20-methyltransferase (TIGR), at 717,068 to 717,838
cobI
DVU0647: DVU0647 - iron compound ABC transporter, periplasmic iron compount-binding protein, putative (TIGR), at 717,840 to 718,754
DVU0647
DVU0648: fepC - iron compound ABC transporter, ATP-binding protein (TIGR), at 718,732 to 719,547
fepC
Position (kb) 717
718 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 716.072 kb on - strand, within DVU0645 at 716.098 kb on + strand, within DVU0645 at 716.106 kb on - strand, within DVU0645 at 716.117 kb on + strand, within DVU0645 at 716.190 kb on - strand, within DVU0645 at 716.193 kb on - strand, within DVU0645 at 716.249 kb on - strand, within DVU0645 at 716.267 kb on - strand, within DVU0645 at 716.325 kb on - strand, within DVU0645 at 716.356 kb on - strand, within DVU0645 at 716.475 kb on - strand, within DVU0645 at 716.527 kb on + strand, within DVU0645 at 716.529 kb on + strand, within DVU0645 at 716.568 kb on - strand, within DVU0645 at 716.586 kb on - strand, within DVU0645 at 716.601 kb on - strand, within DVU0645 at 716.669 kb on - strand at 716.672 kb on + strand at 716.689 kb on + strand at 716.689 kb on + strand at 716.842 kb on + strand at 716.860 kb on - strand at 716.860 kb on - strand at 716.909 kb on - strand at 716.998 kb on + strand at 717.022 kb on + strand at 717.073 kb on - strand at 717.157 kb on + strand, within cobI at 717.165 kb on - strand, within cobI at 717.264 kb on - strand, within cobI at 717.342 kb on + strand, within cobI at 717.406 kb on + strand, within cobI at 717.414 kb on - strand, within cobI at 717.480 kb on - strand, within cobI at 717.519 kb on + strand, within cobI at 717.628 kb on + strand, within cobI at 717.687 kb on - strand, within cobI at 717.711 kb on - strand, within cobI at 717.758 kb on - strand, within cobI at 717.761 kb on + strand, within cobI at 717.763 kb on - strand at 717.769 kb on - strand at 717.925 kb on + strand at 717.977 kb on - strand, within DVU0647 at 718.134 kb on - strand, within DVU0647 at 718.134 kb on - strand, within DVU0647 at 718.134 kb on - strand, within DVU0647 at 718.297 kb on + strand, within DVU0647 at 718.307 kb on - strand, within DVU0647 at 718.381 kb on + strand, within DVU0647 at 718.405 kb on + strand, within DVU0647 at 718.413 kb on - strand, within DVU0647 at 718.413 kb on - strand, within DVU0647 at 718.516 kb on + strand, within DVU0647 at 718.542 kb on + strand, within DVU0647 at 718.611 kb on + strand, within DVU0647 at 718.711 kb on + strand at 718.737 kb on - strand at 718.744 kb on + strand at 718.746 kb on + strand at 718.746 kb on + strand at 718.754 kb on - strand at 718.754 kb on - strand at 718.779 kb on + strand at 718.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine as nutrient 10mM remove 716,072 - DVU0645 0.61 +0.1 716,098 + DVU0645 0.63 -2.9 716,106 - DVU0645 0.63 +0.9 716,117 + DVU0645 0.64 -0.0 716,190 - DVU0645 0.67 +0.1 716,193 - DVU0645 0.67 -0.0 716,249 - DVU0645 0.70 -0.8 716,267 - DVU0645 0.71 -1.0 716,325 - DVU0645 0.74 +0.1 716,356 - DVU0645 0.75 -0.2 716,475 - DVU0645 0.81 -0.4 716,527 + DVU0645 0.84 -0.1 716,529 + DVU0645 0.84 -0.0 716,568 - DVU0645 0.86 +0.2 716,586 - DVU0645 0.87 -0.0 716,601 - DVU0645 0.87 +0.1 716,669 - -0.2 716,672 + -0.7 716,689 + +0.0 716,689 + -0.3 716,842 + +0.2 716,860 - -0.1 716,860 - +0.4 716,909 - -0.2 716,998 + -0.4 717,022 + -1.1 717,073 - +0.7 717,157 + cobI DVU0646 0.12 -2.0 717,165 - cobI DVU0646 0.13 -3.6 717,264 - cobI DVU0646 0.25 -1.5 717,342 + cobI DVU0646 0.36 -4.8 717,406 + cobI DVU0646 0.44 -1.5 717,414 - cobI DVU0646 0.45 +0.2 717,480 - cobI DVU0646 0.53 -2.4 717,519 + cobI DVU0646 0.58 -1.5 717,628 + cobI DVU0646 0.73 -3.5 717,687 - cobI DVU0646 0.80 -2.2 717,711 - cobI DVU0646 0.83 -3.4 717,758 - cobI DVU0646 0.89 -0.0 717,761 + cobI DVU0646 0.90 -4.3 717,763 - +0.4 717,769 - -4.2 717,925 + +1.2 717,977 - DVU0647 0.15 -0.5 718,134 - DVU0647 0.32 -0.3 718,134 - DVU0647 0.32 -0.0 718,134 - DVU0647 0.32 +0.5 718,297 + DVU0647 0.50 -0.1 718,307 - DVU0647 0.51 -2.2 718,381 + DVU0647 0.59 -2.2 718,405 + DVU0647 0.62 +0.1 718,413 - DVU0647 0.63 -0.1 718,413 - DVU0647 0.63 +0.1 718,516 + DVU0647 0.74 -2.4 718,542 + DVU0647 0.77 -0.8 718,611 + DVU0647 0.84 +0.1 718,711 + +0.5 718,737 - -0.5 718,744 + -0.1 718,746 + +0.1 718,746 + -0.4 718,754 - +0.3 718,754 - -0.9 718,779 + +0.6 718,782 - -1.8
Or see this region's nucleotide sequence