Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4909 and Psyr_4910 are separated by 39 nucleotides Psyr_4910 and Psyr_4911 are separated by 372 nucleotides Psyr_4911 and Psyr_4912 are separated by 13 nucleotides Psyr_4912 and Psyr_4913 are separated by 66 nucleotides
Psyr_4909: Psyr_4909 - gamma-aminobutyrate:proton symporter, AAT family, at 5,821,554 to 5,822,945
_4909
Psyr_4910: Psyr_4910 - hypothetical protein, at 5,822,985 to 5,823,242
_4910
Psyr_4911: Psyr_4911 - amino acid ABC transporter ATP-binding protein, PAAT family, at 5,823,615 to 5,824,388
_4911
Psyr_4912: Psyr_4912 - amino acid ABC transporter substrate-binding protein, PAAT family, at 5,824,402 to 5,825,166
_4912
Psyr_4913: Psyr_4913 - amino acid ABC transporter membrane protein 1, PAAT family, at 5,825,233 to 5,825,928
_4913
Position (kb) 5823
5824
5825 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5822.654 kb on - strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.769 kb on + strand, within Psyr_4909 at 5822.770 kb on - strand, within Psyr_4909 at 5822.794 kb on + strand, within Psyr_4909 at 5822.888 kb on + strand at 5822.888 kb on + strand at 5822.888 kb on + strand at 5822.888 kb on + strand at 5822.888 kb on + strand at 5822.888 kb on + strand at 5822.889 kb on - strand at 5822.931 kb on - strand at 5822.945 kb on + strand at 5822.945 kb on + strand at 5822.946 kb on - strand at 5822.946 kb on - strand at 5822.946 kb on - strand at 5822.946 kb on - strand at 5822.946 kb on - strand at 5822.946 kb on - strand at 5822.990 kb on + strand at 5823.003 kb on - strand at 5823.017 kb on + strand, within Psyr_4910 at 5823.020 kb on - strand, within Psyr_4910 at 5823.067 kb on - strand, within Psyr_4910 at 5823.073 kb on + strand, within Psyr_4910 at 5823.073 kb on + strand, within Psyr_4910 at 5823.073 kb on + strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.144 kb on - strand, within Psyr_4910 at 5823.165 kb on + strand, within Psyr_4910 at 5823.166 kb on - strand, within Psyr_4910 at 5823.247 kb on + strand at 5823.247 kb on + strand at 5823.247 kb on + strand at 5823.248 kb on - strand at 5823.445 kb on + strand at 5823.445 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.564 kb on + strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.689 kb on + strand at 5823.689 kb on + strand at 5823.689 kb on + strand at 5823.690 kb on - strand at 5823.690 kb on - strand at 5823.690 kb on - strand at 5823.721 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.041 kb on - strand, within Psyr_4911 at 5824.062 kb on + strand, within Psyr_4911 at 5824.112 kb on + strand, within Psyr_4911 at 5824.270 kb on + strand, within Psyr_4911 at 5824.271 kb on - strand, within Psyr_4911 at 5824.271 kb on - strand, within Psyr_4911 at 5824.333 kb on + strand at 5824.333 kb on + strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.541 kb on + strand, within Psyr_4912 at 5824.552 kb on + strand, within Psyr_4912 at 5824.721 kb on - strand, within Psyr_4912 at 5824.723 kb on + strand, within Psyr_4912 at 5824.724 kb on - strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.889 kb on - strand, within Psyr_4912 at 5824.889 kb on - strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5825.122 kb on + strand at 5825.122 kb on + strand at 5825.122 kb on + strand at 5825.122 kb on + strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.144 kb on - strand at 5825.144 kb on - strand at 5825.144 kb on - strand at 5825.144 kb on - strand at 5825.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,822,654 - Psyr_4909 0.79 -0.9 5,822,704 + Psyr_4909 0.83 +0.1 5,822,704 + Psyr_4909 0.83 -1.1 5,822,705 - Psyr_4909 0.83 +0.2 5,822,705 - Psyr_4909 0.83 -0.5 5,822,705 - Psyr_4909 0.83 +2.9 5,822,705 - Psyr_4909 0.83 -0.1 5,822,705 - Psyr_4909 0.83 -1.5 5,822,705 - Psyr_4909 0.83 +0.1 5,822,705 - Psyr_4909 0.83 +0.0 5,822,705 - Psyr_4909 0.83 -0.1 5,822,705 - Psyr_4909 0.83 -0.1 5,822,769 + Psyr_4909 0.87 -0.5 5,822,770 - Psyr_4909 0.87 +0.1 5,822,794 + Psyr_4909 0.89 -2.1 5,822,888 + -0.1 5,822,888 + -0.8 5,822,888 + +0.1 5,822,888 + -0.4 5,822,888 + -0.1 5,822,888 + +0.0 5,822,889 - +0.5 5,822,931 - +0.4 5,822,945 + +1.4 5,822,945 + -0.5 5,822,946 - -2.1 5,822,946 - +0.8 5,822,946 - -1.0 5,822,946 - -0.5 5,822,946 - -1.6 5,822,946 - +0.3 5,822,990 + +1.5 5,823,003 - +1.5 5,823,017 + Psyr_4910 0.12 +0.4 5,823,020 - Psyr_4910 0.14 +0.1 5,823,067 - Psyr_4910 0.32 +0.3 5,823,073 + Psyr_4910 0.34 +0.6 5,823,073 + Psyr_4910 0.34 -0.1 5,823,073 + Psyr_4910 0.34 +0.5 5,823,074 - Psyr_4910 0.34 -1.1 5,823,074 - Psyr_4910 0.34 +0.0 5,823,074 - Psyr_4910 0.34 -0.5 5,823,144 - Psyr_4910 0.62 -0.4 5,823,165 + Psyr_4910 0.70 +0.2 5,823,166 - Psyr_4910 0.70 +1.0 5,823,247 + -0.1 5,823,247 + -0.9 5,823,247 + +0.5 5,823,248 - -0.6 5,823,445 + -0.4 5,823,445 + -1.2 5,823,533 + -3.6 5,823,533 + +0.2 5,823,533 + -0.9 5,823,533 + +1.0 5,823,533 + +0.2 5,823,533 + +1.5 5,823,533 + +0.7 5,823,533 + +0.2 5,823,533 + +0.2 5,823,533 + -0.2 5,823,534 - +2.3 5,823,534 - +1.5 5,823,534 - +2.3 5,823,534 - -1.0 5,823,534 - +0.2 5,823,534 - +0.5 5,823,534 - +1.4 5,823,534 - -0.4 5,823,534 - +0.7 5,823,534 - +0.1 5,823,534 - +0.6 5,823,564 + +0.1 5,823,565 - -0.3 5,823,565 - -0.4 5,823,565 - +0.5 5,823,689 + -1.0 5,823,689 + +0.2 5,823,689 + +0.0 5,823,690 - -0.9 5,823,690 - -0.5 5,823,690 - +0.3 5,823,721 + Psyr_4911 0.14 -1.3 5,824,036 + Psyr_4911 0.54 -3.7 5,824,036 + Psyr_4911 0.54 -1.3 5,824,036 + Psyr_4911 0.54 +0.0 5,824,036 + Psyr_4911 0.54 -1.0 5,824,036 + Psyr_4911 0.54 -0.7 5,824,036 + Psyr_4911 0.54 -1.5 5,824,036 + Psyr_4911 0.54 -0.5 5,824,036 + Psyr_4911 0.54 -1.4 5,824,037 - Psyr_4911 0.55 +0.5 5,824,037 - Psyr_4911 0.55 -0.5 5,824,037 - Psyr_4911 0.55 +1.4 5,824,037 - Psyr_4911 0.55 -0.4 5,824,041 - Psyr_4911 0.55 +0.8 5,824,062 + Psyr_4911 0.58 -1.6 5,824,112 + Psyr_4911 0.64 -2.0 5,824,270 + Psyr_4911 0.85 -0.5 5,824,271 - Psyr_4911 0.85 +0.5 5,824,271 - Psyr_4911 0.85 -0.2 5,824,333 + +1.5 5,824,333 + -0.1 5,824,334 - -0.6 5,824,334 - +0.6 5,824,334 - -0.6 5,824,334 - +0.2 5,824,334 - +1.9 5,824,541 + Psyr_4912 0.18 -0.0 5,824,552 + Psyr_4912 0.20 +0.0 5,824,721 - Psyr_4912 0.42 -0.3 5,824,723 + Psyr_4912 0.42 -0.7 5,824,724 - Psyr_4912 0.42 -0.3 5,824,888 + Psyr_4912 0.64 +0.6 5,824,888 + Psyr_4912 0.64 +1.5 5,824,888 + Psyr_4912 0.64 +0.4 5,824,888 + Psyr_4912 0.64 -0.5 5,824,889 - Psyr_4912 0.64 +0.1 5,824,889 - Psyr_4912 0.64 +0.7 5,824,957 + Psyr_4912 0.73 -0.3 5,824,957 + Psyr_4912 0.73 -2.4 5,824,957 + Psyr_4912 0.73 -0.1 5,824,957 + Psyr_4912 0.73 -1.1 5,824,957 + Psyr_4912 0.73 -0.5 5,824,957 + Psyr_4912 0.73 +2.2 5,824,957 + Psyr_4912 0.73 +1.7 5,824,957 + Psyr_4912 0.73 +0.2 5,824,957 + Psyr_4912 0.73 -1.2 5,824,957 + Psyr_4912 0.73 -0.0 5,824,957 + Psyr_4912 0.73 -2.3 5,824,957 + Psyr_4912 0.73 -1.4 5,824,958 - Psyr_4912 0.73 -0.2 5,824,958 - Psyr_4912 0.73 -1.7 5,824,958 - Psyr_4912 0.73 -1.3 5,824,958 - Psyr_4912 0.73 +0.3 5,825,122 + +0.6 5,825,122 + +1.0 5,825,122 + -0.9 5,825,122 + +2.0 5,825,123 - -0.2 5,825,123 - -0.5 5,825,123 - +2.6 5,825,123 - -2.7 5,825,123 - -1.5 5,825,123 - +0.6 5,825,123 - -0.5 5,825,123 - -0.4 5,825,123 - -0.4 5,825,123 - +0.8 5,825,123 - +0.8 5,825,143 + -1.4 5,825,143 + +0.3 5,825,143 + -1.1 5,825,143 + +0.0 5,825,143 + +1.0 5,825,143 + -1.2 5,825,143 + +0.6 5,825,143 + -0.9 5,825,144 - -0.7 5,825,144 - -0.1 5,825,144 - -0.3 5,825,144 - +0.2 5,825,144 - -0.2
Or see this region's nucleotide sequence