Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4866 and Psyr_4867 are separated by 68 nucleotides Psyr_4867 and Psyr_4868 are separated by 594 nucleotides
Psyr_4866: Psyr_4866 - Aminotransferase class-III, at 5,774,961 to 5,776,325
_4866
Psyr_4867: Psyr_4867 - L-glutamine synthetase, at 5,776,394 to 5,777,752
_4867
Psyr_4868: Psyr_4868 - glutamate--putrescine ligase, at 5,778,347 to 5,779,723
_4868
Position (kb) 5776
5777
5778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5775.438 kb on + strand, within Psyr_4866 at 5775.439 kb on - strand, within Psyr_4866 at 5775.439 kb on - strand, within Psyr_4866 at 5775.443 kb on - strand, within Psyr_4866 at 5775.443 kb on - strand, within Psyr_4866 at 5775.493 kb on + strand, within Psyr_4866 at 5775.494 kb on - strand, within Psyr_4866 at 5775.494 kb on - strand, within Psyr_4866 at 5775.521 kb on + strand, within Psyr_4866 at 5775.602 kb on - strand, within Psyr_4866 at 5775.763 kb on + strand, within Psyr_4866 at 5775.764 kb on - strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.072 kb on + strand, within Psyr_4866 at 5776.073 kb on - strand, within Psyr_4866 at 5776.195 kb on + strand at 5776.195 kb on + strand at 5776.195 kb on + strand at 5776.249 kb on + strand at 5776.674 kb on + strand, within Psyr_4867 at 5776.674 kb on + strand, within Psyr_4867 at 5776.674 kb on + strand, within Psyr_4867 at 5776.930 kb on + strand, within Psyr_4867 at 5776.930 kb on + strand, within Psyr_4867 at 5776.930 kb on + strand, within Psyr_4867 at 5777.153 kb on - strand, within Psyr_4867 at 5777.187 kb on + strand, within Psyr_4867 at 5777.187 kb on + strand, within Psyr_4867 at 5777.188 kb on - strand, within Psyr_4867 at 5777.188 kb on - strand, within Psyr_4867 at 5777.188 kb on - strand, within Psyr_4867 at 5777.322 kb on + strand, within Psyr_4867 at 5777.323 kb on - strand, within Psyr_4867 at 5777.436 kb on + strand, within Psyr_4867 at 5777.436 kb on + strand, within Psyr_4867 at 5777.436 kb on + strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.488 kb on - strand, within Psyr_4867 at 5777.488 kb on - strand, within Psyr_4867 at 5777.488 kb on - strand, within Psyr_4867 at 5777.547 kb on + strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.554 kb on + strand, within Psyr_4867 at 5777.555 kb on - strand, within Psyr_4867 at 5777.564 kb on + strand, within Psyr_4867 at 5777.565 kb on - strand, within Psyr_4867 at 5777.565 kb on - strand, within Psyr_4867 at 5777.565 kb on - strand, within Psyr_4867 at 5777.568 kb on + strand, within Psyr_4867 at 5777.568 kb on + strand, within Psyr_4867 at 5777.568 kb on + strand, within Psyr_4867 at 5777.569 kb on - strand, within Psyr_4867 at 5777.569 kb on - strand, within Psyr_4867 at 5777.569 kb on - strand, within Psyr_4867 at 5777.746 kb on + strand at 5777.746 kb on + strand at 5777.747 kb on - strand at 5777.747 kb on - strand at 5777.747 kb on - strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.757 kb on - strand at 5777.757 kb on - strand at 5777.769 kb on + strand at 5777.770 kb on - strand at 5777.770 kb on - strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.909 kb on + strand at 5777.911 kb on + strand at 5777.911 kb on + strand at 5777.912 kb on - strand at 5777.917 kb on + strand at 5777.918 kb on - strand at 5777.918 kb on - strand at 5778.027 kb on + strand at 5778.169 kb on + strand at 5778.169 kb on + strand at 5778.170 kb on - strand at 5778.170 kb on - strand at 5778.215 kb on + strand at 5778.215 kb on + strand at 5778.216 kb on - strand at 5778.233 kb on + strand at 5778.234 kb on - strand at 5778.419 kb on + strand at 5778.419 kb on + strand at 5778.419 kb on + strand at 5778.420 kb on - strand at 5778.442 kb on + strand at 5778.442 kb on + strand at 5778.442 kb on + strand at 5778.443 kb on - strand at 5778.443 kb on - strand at 5778.497 kb on + strand, within Psyr_4868 at 5778.498 kb on - strand, within Psyr_4868 at 5778.528 kb on + strand, within Psyr_4868 at 5778.528 kb on + strand, within Psyr_4868 at 5778.529 kb on - strand, within Psyr_4868 at 5778.541 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.724 kb on - strand, within Psyr_4868 at 5778.724 kb on - strand, within Psyr_4868
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,775,438 + Psyr_4866 0.35 -0.6 5,775,439 - Psyr_4866 0.35 -1.6 5,775,439 - Psyr_4866 0.35 +0.7 5,775,443 - Psyr_4866 0.35 -0.5 5,775,443 - Psyr_4866 0.35 -0.4 5,775,493 + Psyr_4866 0.39 +2.5 5,775,494 - Psyr_4866 0.39 -0.1 5,775,494 - Psyr_4866 0.39 -0.1 5,775,521 + Psyr_4866 0.41 +0.5 5,775,602 - Psyr_4866 0.47 -0.7 5,775,763 + Psyr_4866 0.59 +0.7 5,775,764 - Psyr_4866 0.59 -0.4 5,775,820 + Psyr_4866 0.63 +1.5 5,775,820 + Psyr_4866 0.63 +0.8 5,775,820 + Psyr_4866 0.63 -0.3 5,775,820 + Psyr_4866 0.63 +0.4 5,775,820 + Psyr_4866 0.63 +0.1 5,775,820 + Psyr_4866 0.63 -0.9 5,775,820 + Psyr_4866 0.63 +0.2 5,775,820 + Psyr_4866 0.63 -0.2 5,775,820 + Psyr_4866 0.63 -0.1 5,775,820 + Psyr_4866 0.63 -0.1 5,775,820 + Psyr_4866 0.63 -0.0 5,775,820 + Psyr_4866 0.63 -1.1 5,775,821 - Psyr_4866 0.63 +0.1 5,775,821 - Psyr_4866 0.63 +0.6 5,775,821 - Psyr_4866 0.63 +2.4 5,775,821 - Psyr_4866 0.63 -0.2 5,775,821 - Psyr_4866 0.63 -1.1 5,775,821 - Psyr_4866 0.63 -0.3 5,775,821 - Psyr_4866 0.63 +0.3 5,775,821 - Psyr_4866 0.63 -0.7 5,775,821 - Psyr_4866 0.63 +0.4 5,775,821 - Psyr_4866 0.63 -0.2 5,775,821 - Psyr_4866 0.63 -0.5 5,775,821 - Psyr_4866 0.63 +1.9 5,776,069 + Psyr_4866 0.81 +1.5 5,776,069 + Psyr_4866 0.81 +0.1 5,776,069 + Psyr_4866 0.81 -1.3 5,776,069 + Psyr_4866 0.81 +1.1 5,776,069 + Psyr_4866 0.81 +0.2 5,776,069 + Psyr_4866 0.81 +1.8 5,776,069 + Psyr_4866 0.81 -0.5 5,776,070 - Psyr_4866 0.81 +0.1 5,776,070 - Psyr_4866 0.81 +0.1 5,776,070 - Psyr_4866 0.81 +0.5 5,776,070 - Psyr_4866 0.81 -1.4 5,776,070 - Psyr_4866 0.81 +0.1 5,776,072 + Psyr_4866 0.81 +0.7 5,776,073 - Psyr_4866 0.81 +0.1 5,776,195 + -0.2 5,776,195 + -1.3 5,776,195 + +0.4 5,776,249 + +0.4 5,776,674 + Psyr_4867 0.21 -0.5 5,776,674 + Psyr_4867 0.21 -1.1 5,776,674 + Psyr_4867 0.21 -1.2 5,776,930 + Psyr_4867 0.39 -0.3 5,776,930 + Psyr_4867 0.39 -2.1 5,776,930 + Psyr_4867 0.39 -0.4 5,777,153 - Psyr_4867 0.56 -0.3 5,777,187 + Psyr_4867 0.58 -0.4 5,777,187 + Psyr_4867 0.58 -0.3 5,777,188 - Psyr_4867 0.58 -0.2 5,777,188 - Psyr_4867 0.58 +0.1 5,777,188 - Psyr_4867 0.58 -0.3 5,777,322 + Psyr_4867 0.68 +0.7 5,777,323 - Psyr_4867 0.68 -2.0 5,777,436 + Psyr_4867 0.77 -1.6 5,777,436 + Psyr_4867 0.77 -0.1 5,777,436 + Psyr_4867 0.77 +0.2 5,777,437 - Psyr_4867 0.77 +0.3 5,777,437 - Psyr_4867 0.77 -1.4 5,777,437 - Psyr_4867 0.77 +1.3 5,777,437 - Psyr_4867 0.77 -0.2 5,777,437 - Psyr_4867 0.77 -0.3 5,777,437 - Psyr_4867 0.77 -2.9 5,777,487 + Psyr_4867 0.80 -1.4 5,777,487 + Psyr_4867 0.80 -1.4 5,777,487 + Psyr_4867 0.80 -0.9 5,777,487 + Psyr_4867 0.80 -1.1 5,777,487 + Psyr_4867 0.80 +0.0 5,777,487 + Psyr_4867 0.80 -0.0 5,777,487 + Psyr_4867 0.80 -0.8 5,777,488 - Psyr_4867 0.81 -0.9 5,777,488 - Psyr_4867 0.81 -1.3 5,777,488 - Psyr_4867 0.81 +0.2 5,777,547 + Psyr_4867 0.85 +0.6 5,777,548 - Psyr_4867 0.85 -0.3 5,777,548 - Psyr_4867 0.85 +1.3 5,777,548 - Psyr_4867 0.85 +0.1 5,777,548 - Psyr_4867 0.85 +0.1 5,777,550 + Psyr_4867 0.85 +0.5 5,777,550 + Psyr_4867 0.85 -0.7 5,777,550 + Psyr_4867 0.85 -0.6 5,777,550 + Psyr_4867 0.85 -0.3 5,777,550 + Psyr_4867 0.85 +2.6 5,777,550 + Psyr_4867 0.85 -2.1 5,777,550 + Psyr_4867 0.85 -0.6 5,777,551 - Psyr_4867 0.85 +0.4 5,777,551 - Psyr_4867 0.85 -0.0 5,777,551 - Psyr_4867 0.85 +0.8 5,777,551 - Psyr_4867 0.85 +0.7 5,777,551 - Psyr_4867 0.85 +0.7 5,777,551 - Psyr_4867 0.85 +0.2 5,777,551 - Psyr_4867 0.85 +0.3 5,777,551 - Psyr_4867 0.85 -0.5 5,777,551 - Psyr_4867 0.85 +0.4 5,777,551 - Psyr_4867 0.85 -0.1 5,777,551 - Psyr_4867 0.85 -0.8 5,777,551 - Psyr_4867 0.85 +0.7 5,777,554 + Psyr_4867 0.85 +1.2 5,777,555 - Psyr_4867 0.85 -0.9 5,777,564 + Psyr_4867 0.86 -0.5 5,777,565 - Psyr_4867 0.86 -0.6 5,777,565 - Psyr_4867 0.86 +0.5 5,777,565 - Psyr_4867 0.86 -0.8 5,777,568 + Psyr_4867 0.86 +0.7 5,777,568 + Psyr_4867 0.86 -1.2 5,777,568 + Psyr_4867 0.86 -0.9 5,777,569 - Psyr_4867 0.86 -0.6 5,777,569 - Psyr_4867 0.86 -0.5 5,777,569 - Psyr_4867 0.86 -1.0 5,777,746 + -0.9 5,777,746 + -0.9 5,777,747 - -1.3 5,777,747 - +0.0 5,777,747 - +0.6 5,777,752 + -0.8 5,777,752 + -0.7 5,777,752 + -0.6 5,777,752 + -0.2 5,777,752 + -1.2 5,777,752 + -0.2 5,777,752 + -1.3 5,777,752 + -1.6 5,777,752 + -0.5 5,777,752 + -0.4 5,777,753 - -1.9 5,777,753 - +0.8 5,777,753 - -0.8 5,777,753 - -0.8 5,777,753 - +3.6 5,777,753 - -0.8 5,777,753 - +3.1 5,777,753 - -0.2 5,777,756 + +0.2 5,777,756 + -0.4 5,777,756 + -0.4 5,777,756 + -0.3 5,777,756 + -0.5 5,777,756 + -1.5 5,777,757 - -0.9 5,777,757 - -0.8 5,777,769 + +0.2 5,777,770 - +0.8 5,777,770 - +1.1 5,777,818 + -0.2 5,777,818 + +0.1 5,777,818 + -0.4 5,777,818 + -0.3 5,777,818 + -0.5 5,777,818 + -1.1 5,777,819 - +0.4 5,777,819 - -2.9 5,777,819 - +0.2 5,777,819 - -1.2 5,777,819 - +0.8 5,777,819 - +1.5 5,777,819 - +0.7 5,777,819 - +1.1 5,777,819 - +3.1 5,777,819 - -0.4 5,777,819 - -0.0 5,777,819 - +0.1 5,777,819 - +0.1 5,777,819 - -0.3 5,777,909 + +1.5 5,777,911 + -0.6 5,777,911 + -0.9 5,777,912 - +0.0 5,777,917 + +0.1 5,777,918 - +0.7 5,777,918 - +0.2 5,778,027 + -0.6 5,778,169 + +1.2 5,778,169 + -1.2 5,778,170 - -0.3 5,778,170 - -0.1 5,778,215 + +0.7 5,778,215 + -0.7 5,778,216 - +1.1 5,778,233 + -0.9 5,778,234 - -0.9 5,778,419 + -0.3 5,778,419 + -0.6 5,778,419 + -0.2 5,778,420 - +1.0 5,778,442 + -0.4 5,778,442 + -0.0 5,778,442 + -0.3 5,778,443 - -0.6 5,778,443 - -0.5 5,778,497 + Psyr_4868 0.11 -0.9 5,778,498 - Psyr_4868 0.11 -0.4 5,778,528 + Psyr_4868 0.13 -0.1 5,778,528 + Psyr_4868 0.13 +1.2 5,778,529 - Psyr_4868 0.13 -0.1 5,778,541 + Psyr_4868 0.14 +0.8 5,778,723 + Psyr_4868 0.27 -0.2 5,778,723 + Psyr_4868 0.27 +0.8 5,778,723 + Psyr_4868 0.27 -0.7 5,778,723 + Psyr_4868 0.27 -1.1 5,778,723 + Psyr_4868 0.27 +2.6 5,778,724 - Psyr_4868 0.27 +0.8 5,778,724 - Psyr_4868 0.27 +0.1
Or see this region's nucleotide sequence