Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4781 and Psyr_4782 are separated by 106 nucleotides Psyr_4782 and Psyr_4783 are separated by 15 nucleotides Psyr_4783 and Psyr_4784 are separated by 84 nucleotides
Psyr_4781: Psyr_4781 - 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224, at 5,667,885 to 5,669,849
_4781
Psyr_4782: Psyr_4782 - NADH:flavin oxidoreductase/NADH oxidase, at 5,669,956 to 5,672,016
_4782
Psyr_4783: Psyr_4783 - conserved hypothetical protein, at 5,672,032 to 5,672,562
_4783
Psyr_4784: Psyr_4784 - Peptidase M19, renal dipeptidase, at 5,672,647 to 5,673,624
_4784
Position (kb) 5669
5670
5671
5672
5673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5669.509 kb on + strand, within Psyr_4781 at 5669.510 kb on - strand, within Psyr_4781 at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.662 kb on + strand at 5669.663 kb on - strand at 5669.663 kb on - strand at 5669.663 kb on - strand at 5669.663 kb on - strand at 5669.663 kb on - strand at 5669.663 kb on - strand at 5669.701 kb on + strand at 5669.701 kb on + strand at 5669.701 kb on + strand at 5669.841 kb on + strand at 5669.920 kb on + strand at 5669.920 kb on + strand at 5669.920 kb on + strand at 5669.921 kb on - strand at 5669.921 kb on - strand at 5669.921 kb on - strand at 5669.921 kb on - strand at 5669.967 kb on + strand at 5669.987 kb on + strand at 5669.987 kb on + strand at 5669.987 kb on + strand at 5669.988 kb on - strand at 5669.988 kb on - strand at 5669.988 kb on - strand at 5670.006 kb on + strand at 5670.006 kb on + strand at 5670.007 kb on - strand at 5670.028 kb on + strand at 5670.028 kb on + strand at 5670.031 kb on - strand at 5670.144 kb on - strand at 5670.144 kb on - strand at 5670.144 kb on - strand at 5670.146 kb on + strand at 5670.146 kb on + strand at 5670.146 kb on + strand at 5670.147 kb on - strand at 5670.147 kb on - strand at 5670.147 kb on - strand at 5670.147 kb on - strand at 5670.147 kb on - strand at 5670.147 kb on - strand at 5670.263 kb on + strand, within Psyr_4782 at 5670.263 kb on + strand, within Psyr_4782 at 5670.311 kb on + strand, within Psyr_4782 at 5670.312 kb on - strand, within Psyr_4782 at 5670.323 kb on + strand, within Psyr_4782 at 5670.326 kb on + strand, within Psyr_4782 at 5670.327 kb on - strand, within Psyr_4782 at 5670.456 kb on - strand, within Psyr_4782 at 5670.890 kb on + strand, within Psyr_4782 at 5670.890 kb on + strand, within Psyr_4782 at 5670.890 kb on + strand, within Psyr_4782 at 5670.890 kb on + strand, within Psyr_4782 at 5670.890 kb on + strand, within Psyr_4782 at 5670.890 kb on + strand, within Psyr_4782 at 5670.891 kb on - strand, within Psyr_4782 at 5670.959 kb on + strand, within Psyr_4782 at 5670.959 kb on + strand, within Psyr_4782 at 5670.959 kb on + strand, within Psyr_4782 at 5670.959 kb on + strand, within Psyr_4782 at 5670.959 kb on + strand, within Psyr_4782 at 5670.960 kb on - strand, within Psyr_4782 at 5670.960 kb on - strand, within Psyr_4782 at 5670.960 kb on - strand, within Psyr_4782 at 5670.960 kb on - strand, within Psyr_4782 at 5670.960 kb on - strand, within Psyr_4782 at 5671.067 kb on + strand, within Psyr_4782 at 5671.067 kb on + strand, within Psyr_4782 at 5671.067 kb on + strand, within Psyr_4782 at 5671.068 kb on - strand, within Psyr_4782 at 5671.068 kb on - strand, within Psyr_4782 at 5671.187 kb on + strand, within Psyr_4782 at 5671.283 kb on + strand, within Psyr_4782 at 5671.283 kb on + strand, within Psyr_4782 at 5671.283 kb on + strand, within Psyr_4782 at 5671.284 kb on - strand, within Psyr_4782 at 5671.284 kb on - strand, within Psyr_4782 at 5671.562 kb on + strand, within Psyr_4782 at 5671.562 kb on + strand, within Psyr_4782 at 5671.562 kb on + strand, within Psyr_4782 at 5671.563 kb on - strand, within Psyr_4782 at 5671.563 kb on - strand, within Psyr_4782 at 5671.563 kb on - strand, within Psyr_4782 at 5671.563 kb on - strand, within Psyr_4782 at 5671.563 kb on - strand, within Psyr_4782 at 5671.563 kb on - strand, within Psyr_4782 at 5671.605 kb on + strand, within Psyr_4782 at 5671.606 kb on - strand, within Psyr_4782 at 5671.883 kb on + strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5672.087 kb on + strand, within Psyr_4783 at 5672.088 kb on - strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.312 kb on + strand at 5672.312 kb on + strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.400 kb on - strand, within Psyr_4783 at 5672.400 kb on - strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.481 kb on - strand, within Psyr_4783 at 5672.481 kb on - strand, within Psyr_4783 at 5672.590 kb on + strand at 5672.635 kb on - strand at 5672.635 kb on - strand at 5672.635 kb on - strand at 5672.843 kb on + strand, within Psyr_4784 at 5672.843 kb on + strand, within Psyr_4784 at 5672.844 kb on - strand, within Psyr_4784 at 5672.884 kb on - strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.943 kb on - strand, within Psyr_4784
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,669,509 + Psyr_4781 0.83 +0.1 5,669,510 - Psyr_4781 0.83 +0.4 5,669,662 + -0.7 5,669,662 + -1.1 5,669,662 + +0.0 5,669,662 + +1.0 5,669,662 + -0.9 5,669,662 + +0.0 5,669,662 + -0.1 5,669,662 + -0.3 5,669,662 + -0.8 5,669,663 - +2.2 5,669,663 - -0.0 5,669,663 - -0.1 5,669,663 - -0.5 5,669,663 - -0.8 5,669,663 - +0.5 5,669,701 + +1.6 5,669,701 + -0.4 5,669,701 + +0.9 5,669,841 + +0.5 5,669,920 + -0.1 5,669,920 + -0.6 5,669,920 + -1.6 5,669,921 - +0.9 5,669,921 - -0.1 5,669,921 - -0.5 5,669,921 - -0.9 5,669,967 + -1.5 5,669,987 + -0.8 5,669,987 + +0.6 5,669,987 + +2.7 5,669,988 - -0.8 5,669,988 - -0.9 5,669,988 - +0.0 5,670,006 + -1.0 5,670,006 + -0.3 5,670,007 - +0.9 5,670,028 + +0.8 5,670,028 + +0.1 5,670,031 - +1.1 5,670,144 - +0.8 5,670,144 - -0.8 5,670,144 - -1.3 5,670,146 + -0.6 5,670,146 + -0.4 5,670,146 + +0.3 5,670,147 - -0.5 5,670,147 - +0.5 5,670,147 - +0.9 5,670,147 - -0.4 5,670,147 - -0.2 5,670,147 - +1.2 5,670,263 + Psyr_4782 0.15 -0.6 5,670,263 + Psyr_4782 0.15 -1.5 5,670,311 + Psyr_4782 0.17 +0.0 5,670,312 - Psyr_4782 0.17 +0.3 5,670,323 + Psyr_4782 0.18 -0.1 5,670,326 + Psyr_4782 0.18 -0.1 5,670,327 - Psyr_4782 0.18 -0.6 5,670,456 - Psyr_4782 0.24 +1.4 5,670,890 + Psyr_4782 0.45 +0.7 5,670,890 + Psyr_4782 0.45 -0.4 5,670,890 + Psyr_4782 0.45 +0.2 5,670,890 + Psyr_4782 0.45 -0.6 5,670,890 + Psyr_4782 0.45 -1.5 5,670,890 + Psyr_4782 0.45 -1.1 5,670,891 - Psyr_4782 0.45 -1.1 5,670,959 + Psyr_4782 0.49 -0.5 5,670,959 + Psyr_4782 0.49 -1.4 5,670,959 + Psyr_4782 0.49 -1.0 5,670,959 + Psyr_4782 0.49 -0.6 5,670,959 + Psyr_4782 0.49 -1.5 5,670,960 - Psyr_4782 0.49 +2.6 5,670,960 - Psyr_4782 0.49 -0.9 5,670,960 - Psyr_4782 0.49 -1.1 5,670,960 - Psyr_4782 0.49 +1.1 5,670,960 - Psyr_4782 0.49 -0.4 5,671,067 + Psyr_4782 0.54 +0.2 5,671,067 + Psyr_4782 0.54 +0.8 5,671,067 + Psyr_4782 0.54 +0.4 5,671,068 - Psyr_4782 0.54 +0.3 5,671,068 - Psyr_4782 0.54 -0.8 5,671,187 + Psyr_4782 0.60 +0.6 5,671,283 + Psyr_4782 0.64 -1.2 5,671,283 + Psyr_4782 0.64 +1.0 5,671,283 + Psyr_4782 0.64 -1.0 5,671,284 - Psyr_4782 0.64 +2.2 5,671,284 - Psyr_4782 0.64 -0.7 5,671,562 + Psyr_4782 0.78 +1.5 5,671,562 + Psyr_4782 0.78 -1.0 5,671,562 + Psyr_4782 0.78 -2.0 5,671,563 - Psyr_4782 0.78 -0.3 5,671,563 - Psyr_4782 0.78 +0.4 5,671,563 - Psyr_4782 0.78 +0.6 5,671,563 - Psyr_4782 0.78 -0.4 5,671,563 - Psyr_4782 0.78 -0.9 5,671,563 - Psyr_4782 0.78 -2.9 5,671,605 + Psyr_4782 0.80 -1.1 5,671,606 - Psyr_4782 0.80 -0.1 5,671,883 + -1.0 5,671,884 - -0.9 5,671,884 - +2.3 5,671,884 - +1.0 5,671,884 - -1.0 5,671,886 + -0.1 5,671,886 + +2.0 5,671,886 + -0.3 5,671,886 + +0.6 5,671,886 + +3.3 5,671,887 - +0.5 5,671,887 - +0.3 5,671,887 - -0.7 5,671,887 - -0.3 5,671,887 - -1.5 5,671,887 - -0.6 5,671,887 - -0.7 5,671,887 - +0.1 5,672,087 + Psyr_4783 0.10 +0.4 5,672,088 - Psyr_4783 0.11 -1.6 5,672,174 + Psyr_4783 0.27 -0.4 5,672,174 + Psyr_4783 0.27 +0.6 5,672,174 + Psyr_4783 0.27 +0.6 5,672,174 + Psyr_4783 0.27 +0.8 5,672,174 + Psyr_4783 0.27 -0.0 5,672,174 + Psyr_4783 0.27 -0.6 5,672,175 - Psyr_4783 0.27 -0.6 5,672,175 - Psyr_4783 0.27 -0.6 5,672,175 - Psyr_4783 0.27 -0.6 5,672,175 - Psyr_4783 0.27 +1.0 5,672,175 - Psyr_4783 0.27 +0.4 5,672,175 - Psyr_4783 0.27 -0.2 5,672,175 - Psyr_4783 0.27 +0.6 5,672,175 - Psyr_4783 0.27 +1.0 5,672,207 + Psyr_4783 0.33 -0.6 5,672,207 + Psyr_4783 0.33 -0.6 5,672,207 + Psyr_4783 0.33 +2.1 5,672,208 - Psyr_4783 0.33 +0.3 5,672,208 - Psyr_4783 0.33 -2.2 5,672,208 - Psyr_4783 0.33 -0.3 5,672,208 - Psyr_4783 0.33 +0.9 5,672,312 + +1.0 5,672,312 + Psyr_4783 0.53 -0.6 5,672,312 + Psyr_4783 0.53 -0.4 5,672,312 + Psyr_4783 0.53 +0.0 5,672,313 - Psyr_4783 0.53 -0.8 5,672,313 - Psyr_4783 0.53 +0.2 5,672,313 - Psyr_4783 0.53 +1.2 5,672,313 - Psyr_4783 0.53 +1.2 5,672,313 - Psyr_4783 0.53 -1.9 5,672,313 - Psyr_4783 0.53 +0.7 5,672,399 + Psyr_4783 0.69 -1.0 5,672,399 + Psyr_4783 0.69 +0.4 5,672,399 + Psyr_4783 0.69 -0.8 5,672,399 + Psyr_4783 0.69 +0.4 5,672,400 - Psyr_4783 0.69 +0.7 5,672,400 - Psyr_4783 0.69 -0.1 5,672,480 + Psyr_4783 0.84 +0.7 5,672,480 + Psyr_4783 0.84 -1.3 5,672,480 + Psyr_4783 0.84 -1.1 5,672,481 - Psyr_4783 0.85 -0.6 5,672,481 - Psyr_4783 0.85 -0.4 5,672,590 + +0.5 5,672,635 - -0.8 5,672,635 - +0.6 5,672,635 - -1.0 5,672,843 + Psyr_4784 0.20 +0.6 5,672,843 + Psyr_4784 0.20 -2.0 5,672,844 - Psyr_4784 0.20 +0.7 5,672,884 - Psyr_4784 0.24 +0.3 5,672,924 + Psyr_4784 0.28 -0.1 5,672,924 + Psyr_4784 0.28 -0.5 5,672,924 + Psyr_4784 0.28 +0.4 5,672,924 + Psyr_4784 0.28 +2.2 5,672,924 + Psyr_4784 0.28 +0.0 5,672,924 + Psyr_4784 0.28 +0.2 5,672,925 - Psyr_4784 0.28 -0.9 5,672,925 - Psyr_4784 0.28 +0.2 5,672,925 - Psyr_4784 0.28 -0.5 5,672,925 - Psyr_4784 0.28 +0.5 5,672,943 - Psyr_4784 0.30 -0.2
Or see this region's nucleotide sequence