Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4659 and Psyr_4660 are separated by 725 nucleotides Psyr_4660 and Psyr_4661 are separated by 146 nucleotides Psyr_4661 and Psyr_4662 overlap by 4 nucleotides
Psyr_4659: Psyr_4659 - type III effector HopAB1, at 5,519,229 to 5,520,779
_4659
Psyr_4660: Psyr_4660 - Formate/nitrite transporter, at 5,521,505 to 5,522,320
_4660
Psyr_4661: Psyr_4661 - Phosphopantetheinyl transferase-like protein, at 5,522,467 to 5,523,099
_4661
Psyr_4662: Psyr_4662 - Amino acid adenylation, at 5,523,096 to 5,527,136
_4662
Position (kb) 5521
5522
5523 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5520.534 kb on + strand, within Psyr_4659 at 5520.535 kb on - strand, within Psyr_4659 at 5520.616 kb on - strand, within Psyr_4659 at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.940 kb on + strand at 5520.993 kb on + strand at 5521.011 kb on + strand at 5521.011 kb on + strand at 5521.011 kb on + strand at 5521.012 kb on - strand at 5521.012 kb on - strand at 5521.029 kb on + strand at 5521.029 kb on + strand at 5521.029 kb on + strand at 5521.030 kb on - strand at 5521.053 kb on + strand at 5521.054 kb on - strand at 5521.054 kb on - strand at 5521.063 kb on + strand at 5521.064 kb on - strand at 5521.064 kb on - strand at 5521.064 kb on - strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.083 kb on + strand at 5521.083 kb on + strand at 5521.084 kb on - strand at 5521.084 kb on - strand at 5521.084 kb on - strand at 5521.096 kb on - strand at 5521.096 kb on - strand at 5521.098 kb on + strand at 5521.098 kb on + strand at 5521.099 kb on - strand at 5521.112 kb on + strand at 5521.112 kb on + strand at 5521.113 kb on - strand at 5521.124 kb on - strand at 5521.124 kb on - strand at 5521.227 kb on + strand at 5521.231 kb on + strand at 5521.232 kb on - strand at 5521.246 kb on + strand at 5521.247 kb on - strand at 5521.293 kb on + strand at 5521.294 kb on - strand at 5521.294 kb on - strand at 5521.294 kb on - strand at 5521.294 kb on - strand at 5521.345 kb on + strand at 5521.345 kb on + strand at 5521.345 kb on + strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.466 kb on - strand at 5521.466 kb on - strand at 5521.801 kb on + strand, within Psyr_4660 at 5521.825 kb on + strand, within Psyr_4660 at 5521.826 kb on - strand, within Psyr_4660 at 5521.878 kb on - strand, within Psyr_4660 at 5522.030 kb on + strand, within Psyr_4660 at 5522.031 kb on - strand, within Psyr_4660 at 5522.091 kb on + strand, within Psyr_4660 at 5522.243 kb on + strand at 5522.263 kb on + strand at 5522.393 kb on - strand at 5522.428 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.502 kb on - strand at 5522.502 kb on - strand at 5522.502 kb on - strand at 5522.502 kb on - strand at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.215 kb on - strand at 5523.215 kb on - strand at 5523.215 kb on - strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,520,534 + Psyr_4659 0.84 +0.6 5,520,535 - Psyr_4659 0.84 +0.8 5,520,616 - Psyr_4659 0.89 +1.1 5,520,779 + -0.3 5,520,779 + -0.5 5,520,779 + +1.6 5,520,779 + +1.2 5,520,779 + +0.3 5,520,779 + -1.0 5,520,779 + +1.4 5,520,779 + +0.4 5,520,779 + +0.6 5,520,779 + -0.5 5,520,779 + -1.3 5,520,779 + -0.0 5,520,779 + +1.8 5,520,779 + -1.3 5,520,779 + -0.1 5,520,779 + -0.4 5,520,779 + +0.5 5,520,779 + +0.0 5,520,779 + +1.6 5,520,779 + -0.1 5,520,779 + +0.7 5,520,779 + +0.7 5,520,779 + +0.6 5,520,779 + +0.0 5,520,779 + -2.0 5,520,779 + -0.3 5,520,779 + -0.0 5,520,779 + +1.0 5,520,779 + -0.5 5,520,779 + +0.6 5,520,779 + +0.1 5,520,779 + -1.5 5,520,779 + -1.2 5,520,779 + -1.7 5,520,779 + -0.9 5,520,780 - +0.2 5,520,780 - +0.8 5,520,780 - -0.4 5,520,780 - -1.1 5,520,780 - +0.4 5,520,780 - +0.2 5,520,780 - -0.0 5,520,780 - -0.1 5,520,780 - +3.1 5,520,780 - +4.8 5,520,780 - -0.6 5,520,780 - -0.4 5,520,780 - +0.3 5,520,780 - +0.2 5,520,780 - -0.2 5,520,780 - -0.2 5,520,780 - +0.1 5,520,780 - +0.6 5,520,780 - +0.2 5,520,780 - -0.5 5,520,780 - +0.1 5,520,780 - +0.3 5,520,780 - +0.1 5,520,780 - -0.2 5,520,780 - -2.2 5,520,780 - +2.6 5,520,780 - +0.2 5,520,780 - -0.3 5,520,780 - +0.3 5,520,780 - +0.0 5,520,780 - +0.5 5,520,780 - -0.0 5,520,780 - +0.5 5,520,780 - -2.2 5,520,780 - +0.8 5,520,780 - +0.3 5,520,780 - -0.4 5,520,780 - -0.2 5,520,780 - +0.8 5,520,780 - -0.8 5,520,781 + +0.3 5,520,781 + +0.1 5,520,781 + -0.2 5,520,781 + -1.8 5,520,781 + -1.1 5,520,781 + +0.8 5,520,781 + -0.1 5,520,781 + +1.1 5,520,781 + -0.3 5,520,781 + +2.0 5,520,781 + +2.8 5,520,781 + +4.0 5,520,781 + +0.1 5,520,781 + -0.1 5,520,781 + -0.1 5,520,781 + +0.3 5,520,781 + +0.3 5,520,781 + -0.2 5,520,781 + -0.6 5,520,781 + -0.7 5,520,781 + -0.6 5,520,781 + +0.6 5,520,781 + +1.4 5,520,781 + +0.2 5,520,781 + -1.1 5,520,781 + -0.2 5,520,781 + -2.0 5,520,781 + +0.4 5,520,781 + -0.8 5,520,781 + -0.3 5,520,781 + -2.5 5,520,781 + -0.8 5,520,781 + +0.5 5,520,782 - -0.7 5,520,782 - +2.6 5,520,782 - -1.0 5,520,782 - -2.0 5,520,782 - +0.6 5,520,782 - -0.4 5,520,782 - +0.5 5,520,782 - +1.4 5,520,782 - -0.0 5,520,782 - +0.0 5,520,782 - -1.2 5,520,782 - -0.3 5,520,782 - +0.7 5,520,782 - +0.3 5,520,782 - +0.3 5,520,782 - +1.1 5,520,782 - +0.0 5,520,782 - -0.2 5,520,782 - +0.8 5,520,782 - -0.6 5,520,782 - +2.0 5,520,782 - +1.4 5,520,782 - +1.4 5,520,782 - -0.0 5,520,782 - +0.6 5,520,782 - +0.1 5,520,782 - +1.6 5,520,782 - -1.6 5,520,782 - -0.5 5,520,782 - +0.2 5,520,782 - +1.5 5,520,782 - -1.3 5,520,782 - +0.5 5,520,783 + +1.7 5,520,783 + -0.2 5,520,783 + +0.3 5,520,783 + -1.0 5,520,783 + +0.6 5,520,783 + +1.4 5,520,783 + -0.2 5,520,783 + +2.1 5,520,783 + -1.5 5,520,783 + +2.2 5,520,783 + -0.0 5,520,784 - +0.5 5,520,784 - +0.2 5,520,784 - -0.5 5,520,784 - +0.7 5,520,784 - +1.0 5,520,784 - +1.1 5,520,784 - -0.8 5,520,784 - -0.7 5,520,784 - -0.3 5,520,784 - +2.3 5,520,940 + +0.2 5,520,993 + +1.1 5,521,011 + +0.5 5,521,011 + -0.6 5,521,011 + +1.0 5,521,012 - +2.6 5,521,012 - -0.5 5,521,029 + -1.0 5,521,029 + +0.5 5,521,029 + +2.3 5,521,030 - -0.8 5,521,053 + -0.9 5,521,054 - +0.3 5,521,054 - -0.9 5,521,063 + -0.6 5,521,064 - -0.9 5,521,064 - +0.4 5,521,064 - +0.6 5,521,073 + +0.1 5,521,073 + +1.0 5,521,073 + +1.0 5,521,073 + -1.3 5,521,073 + +0.3 5,521,073 + -2.0 5,521,073 + +0.4 5,521,073 + +0.2 5,521,073 + +0.7 5,521,073 + -0.3 5,521,073 + -0.1 5,521,073 + -0.1 5,521,074 - -0.6 5,521,074 - -0.5 5,521,074 - -0.5 5,521,074 - -0.5 5,521,074 - +1.1 5,521,074 - -0.6 5,521,074 - -0.4 5,521,074 - -1.4 5,521,074 - -0.1 5,521,074 - +0.6 5,521,074 - +0.4 5,521,074 - +0.2 5,521,074 - +0.5 5,521,074 - -0.5 5,521,074 - +0.1 5,521,074 - +0.2 5,521,074 - -1.2 5,521,083 + -1.0 5,521,083 + +0.0 5,521,084 - -0.0 5,521,084 - +0.5 5,521,084 - -0.7 5,521,096 - -0.4 5,521,096 - +2.1 5,521,098 + -0.8 5,521,098 + +1.5 5,521,099 - +1.8 5,521,112 + -0.7 5,521,112 + -0.6 5,521,113 - +1.7 5,521,124 - +1.5 5,521,124 - -0.7 5,521,227 + +1.7 5,521,231 + +0.4 5,521,232 - +0.2 5,521,246 + +0.4 5,521,247 - +0.1 5,521,293 + -0.2 5,521,294 - +1.6 5,521,294 - -0.0 5,521,294 - -1.3 5,521,294 - +0.4 5,521,345 + +0.1 5,521,345 + +0.2 5,521,345 + -0.6 5,521,346 - -0.6 5,521,346 - +0.1 5,521,346 - +0.5 5,521,346 - -0.5 5,521,346 - +1.2 5,521,346 - -0.3 5,521,346 - -1.4 5,521,346 - +1.5 5,521,346 - +1.0 5,521,346 - -0.0 5,521,466 - +0.8 5,521,466 - +1.2 5,521,801 + Psyr_4660 0.36 -0.9 5,521,825 + Psyr_4660 0.39 +0.2 5,521,826 - Psyr_4660 0.39 -1.3 5,521,878 - Psyr_4660 0.46 -0.9 5,522,030 + Psyr_4660 0.64 -1.0 5,522,031 - Psyr_4660 0.64 -0.5 5,522,091 + Psyr_4660 0.72 -0.8 5,522,243 + +1.0 5,522,263 + +0.4 5,522,393 - +0.4 5,522,428 + +0.0 5,522,501 + -0.8 5,522,501 + -1.1 5,522,501 + -2.0 5,522,501 + -0.7 5,522,501 + -0.7 5,522,501 + +1.8 5,522,501 + +0.5 5,522,502 - +0.4 5,522,502 - +0.7 5,522,502 - +0.3 5,522,502 - -1.0 5,523,022 + Psyr_4661 0.88 -0.4 5,523,022 + Psyr_4661 0.88 +0.8 5,523,022 + Psyr_4661 0.88 +1.2 5,523,022 + Psyr_4661 0.88 +0.8 5,523,022 + Psyr_4661 0.88 -0.6 5,523,022 + Psyr_4661 0.88 -1.2 5,523,022 + Psyr_4661 0.88 +0.1 5,523,022 + Psyr_4661 0.88 -0.2 5,523,023 - Psyr_4661 0.88 -0.3 5,523,023 - Psyr_4661 0.88 +0.3 5,523,023 - Psyr_4661 0.88 +0.4 5,523,023 - Psyr_4661 0.88 +1.0 5,523,023 - Psyr_4661 0.88 +0.2 5,523,023 - Psyr_4661 0.88 +0.3 5,523,023 - Psyr_4661 0.88 +0.1 5,523,023 - Psyr_4661 0.88 -0.3 5,523,023 - Psyr_4661 0.88 -0.0 5,523,023 - Psyr_4661 0.88 -0.2 5,523,023 - Psyr_4661 0.88 -0.4 5,523,023 - Psyr_4661 0.88 -0.0 5,523,023 - Psyr_4661 0.88 +0.2 5,523,023 - Psyr_4661 0.88 +1.0 5,523,215 - -0.1 5,523,215 - +0.6 5,523,215 - +2.3 5,523,241 + +0.8 5,523,241 + -0.2 5,523,241 + -0.4 5,523,241 + +0.2 5,523,241 + +1.3 5,523,241 + -0.8 5,523,242 - -0.1 5,523,242 - -0.2 5,523,242 - +1.4 5,523,242 - +1.2 5,523,242 - -0.1 5,523,242 - -0.4 5,523,242 - +0.8 5,523,242 - -0.6 5,523,242 - +0.6 5,523,242 - -1.3 5,523,242 - +0.6
Or see this region's nucleotide sequence