Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4565 and Psyr_4566 are separated by 201 nucleotides Psyr_4566 and Psyr_4567 are separated by 3 nucleotides
Psyr_4565: Psyr_4565 - tyrosyl-tRNA synthetase, at 5,428,772 to 5,429,983
_4565
Psyr_4566: Psyr_4566 - Peptidase M23B, at 5,430,185 to 5,431,612
_4566
Psyr_4567: Psyr_4567 - Protein of unknown function UPF0075, at 5,431,616 to 5,432,710
_4567
Position (kb) 5430
5431
5432 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5430.015 kb on - strand at 5430.111 kb on - strand at 5430.115 kb on + strand at 5430.181 kb on - strand at 5430.184 kb on + strand at 5430.184 kb on + strand at 5430.185 kb on - strand at 5430.355 kb on - strand, within Psyr_4566 at 5430.355 kb on - strand, within Psyr_4566 at 5430.597 kb on + strand, within Psyr_4566 at 5430.598 kb on - strand, within Psyr_4566 at 5430.598 kb on - strand, within Psyr_4566 at 5430.752 kb on + strand, within Psyr_4566 at 5430.797 kb on + strand, within Psyr_4566 at 5430.801 kb on + strand, within Psyr_4566 at 5430.801 kb on + strand, within Psyr_4566 at 5430.801 kb on + strand, within Psyr_4566 at 5430.801 kb on + strand, within Psyr_4566 at 5430.801 kb on + strand, within Psyr_4566 at 5430.802 kb on - strand, within Psyr_4566 at 5430.802 kb on - strand, within Psyr_4566 at 5430.802 kb on - strand, within Psyr_4566 at 5430.802 kb on - strand, within Psyr_4566 at 5430.802 kb on - strand, within Psyr_4566 at 5430.802 kb on - strand, within Psyr_4566 at 5430.802 kb on - strand, within Psyr_4566 at 5430.859 kb on + strand, within Psyr_4566 at 5430.859 kb on + strand, within Psyr_4566 at 5430.859 kb on + strand, within Psyr_4566 at 5430.859 kb on + strand, within Psyr_4566 at 5430.859 kb on + strand, within Psyr_4566 at 5430.860 kb on - strand, within Psyr_4566 at 5430.860 kb on - strand, within Psyr_4566 at 5430.860 kb on - strand, within Psyr_4566 at 5430.860 kb on - strand, within Psyr_4566 at 5430.945 kb on + strand, within Psyr_4566 at 5430.945 kb on + strand, within Psyr_4566 at 5430.945 kb on + strand, within Psyr_4566 at 5430.945 kb on + strand, within Psyr_4566 at 5430.946 kb on - strand, within Psyr_4566 at 5430.947 kb on + strand, within Psyr_4566 at 5430.948 kb on - strand, within Psyr_4566 at 5430.948 kb on - strand, within Psyr_4566 at 5430.948 kb on - strand, within Psyr_4566 at 5430.948 kb on - strand, within Psyr_4566 at 5430.948 kb on - strand, within Psyr_4566 at 5430.948 kb on - strand, within Psyr_4566 at 5430.979 kb on - strand, within Psyr_4566 at 5430.979 kb on - strand, within Psyr_4566 at 5430.991 kb on + strand, within Psyr_4566 at 5431.028 kb on + strand, within Psyr_4566 at 5431.028 kb on + strand, within Psyr_4566 at 5431.029 kb on - strand, within Psyr_4566 at 5431.029 kb on - strand, within Psyr_4566 at 5431.029 kb on - strand, within Psyr_4566 at 5431.043 kb on + strand, within Psyr_4566 at 5431.064 kb on - strand, within Psyr_4566 at 5431.070 kb on + strand, within Psyr_4566 at 5431.070 kb on + strand, within Psyr_4566 at 5431.071 kb on - strand, within Psyr_4566 at 5431.073 kb on + strand, within Psyr_4566 at 5431.074 kb on - strand, within Psyr_4566 at 5431.074 kb on - strand, within Psyr_4566 at 5431.074 kb on - strand, within Psyr_4566 at 5431.074 kb on - strand, within Psyr_4566 at 5431.208 kb on + strand, within Psyr_4566 at 5431.208 kb on + strand, within Psyr_4566 at 5431.319 kb on + strand, within Psyr_4566 at 5431.319 kb on + strand, within Psyr_4566 at 5431.320 kb on - strand, within Psyr_4566 at 5431.320 kb on - strand, within Psyr_4566 at 5431.320 kb on - strand, within Psyr_4566 at 5431.324 kb on + strand, within Psyr_4566 at 5431.325 kb on - strand, within Psyr_4566 at 5431.331 kb on + strand, within Psyr_4566 at 5431.331 kb on + strand, within Psyr_4566 at 5431.331 kb on + strand, within Psyr_4566 at 5431.331 kb on + strand, within Psyr_4566 at 5431.332 kb on - strand, within Psyr_4566 at 5431.332 kb on - strand, within Psyr_4566 at 5431.332 kb on - strand, within Psyr_4566 at 5431.403 kb on + strand, within Psyr_4566 at 5431.404 kb on - strand, within Psyr_4566 at 5431.405 kb on + strand, within Psyr_4566 at 5431.414 kb on + strand, within Psyr_4566 at 5431.446 kb on - strand, within Psyr_4566 at 5431.473 kb on + strand at 5431.473 kb on + strand at 5431.603 kb on + strand at 5431.604 kb on - strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.632 kb on + strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.633 kb on - strand at 5431.717 kb on + strand at 5431.718 kb on + strand at 5431.718 kb on + strand at 5431.718 kb on + strand at 5431.718 kb on + strand at 5431.718 kb on + strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.719 kb on - strand at 5431.909 kb on + strand, within Psyr_4567 at 5431.910 kb on - strand, within Psyr_4567 at 5431.910 kb on - strand, within Psyr_4567 at 5431.910 kb on - strand, within Psyr_4567 at 5432.181 kb on + strand, within Psyr_4567 at 5432.181 kb on + strand, within Psyr_4567 at 5432.182 kb on - strand, within Psyr_4567 at 5432.182 kb on - strand, within Psyr_4567 at 5432.182 kb on - strand, within Psyr_4567 at 5432.222 kb on + strand, within Psyr_4567 at 5432.222 kb on + strand, within Psyr_4567 at 5432.223 kb on - strand, within Psyr_4567 at 5432.324 kb on - strand, within Psyr_4567 at 5432.324 kb on - strand, within Psyr_4567 at 5432.545 kb on + strand, within Psyr_4567
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,430,015 - -2.3 5,430,111 - -1.6 5,430,115 + +1.3 5,430,181 - -2.4 5,430,184 + -2.8 5,430,184 + +1.0 5,430,185 - -1.9 5,430,355 - Psyr_4566 0.12 -3.4 5,430,355 - Psyr_4566 0.12 -3.0 5,430,597 + Psyr_4566 0.29 +1.0 5,430,598 - Psyr_4566 0.29 +1.0 5,430,598 - Psyr_4566 0.29 -1.8 5,430,752 + Psyr_4566 0.40 -3.3 5,430,797 + Psyr_4566 0.43 -1.4 5,430,801 + Psyr_4566 0.43 -2.6 5,430,801 + Psyr_4566 0.43 -0.7 5,430,801 + Psyr_4566 0.43 -2.3 5,430,801 + Psyr_4566 0.43 -2.5 5,430,801 + Psyr_4566 0.43 -1.0 5,430,802 - Psyr_4566 0.43 -2.6 5,430,802 - Psyr_4566 0.43 -2.5 5,430,802 - Psyr_4566 0.43 -0.0 5,430,802 - Psyr_4566 0.43 -2.3 5,430,802 - Psyr_4566 0.43 -0.0 5,430,802 - Psyr_4566 0.43 -2.8 5,430,802 - Psyr_4566 0.43 +1.0 5,430,859 + Psyr_4566 0.47 -1.8 5,430,859 + Psyr_4566 0.47 -3.4 5,430,859 + Psyr_4566 0.47 -2.4 5,430,859 + Psyr_4566 0.47 -0.0 5,430,859 + Psyr_4566 0.47 +1.0 5,430,860 - Psyr_4566 0.47 -2.5 5,430,860 - Psyr_4566 0.47 -3.4 5,430,860 - Psyr_4566 0.47 -0.0 5,430,860 - Psyr_4566 0.47 -0.0 5,430,945 + Psyr_4566 0.53 -1.4 5,430,945 + Psyr_4566 0.53 -2.9 5,430,945 + Psyr_4566 0.53 -2.0 5,430,945 + Psyr_4566 0.53 -2.0 5,430,946 - Psyr_4566 0.53 -2.9 5,430,947 + Psyr_4566 0.53 -1.4 5,430,948 - Psyr_4566 0.53 -2.5 5,430,948 - Psyr_4566 0.53 -2.8 5,430,948 - Psyr_4566 0.53 -2.6 5,430,948 - Psyr_4566 0.53 +0.4 5,430,948 - Psyr_4566 0.53 +2.0 5,430,948 - Psyr_4566 0.53 -2.4 5,430,979 - Psyr_4566 0.56 -1.4 5,430,979 - Psyr_4566 0.56 -1.4 5,430,991 + Psyr_4566 0.56 -2.0 5,431,028 + Psyr_4566 0.59 -0.6 5,431,028 + Psyr_4566 0.59 -3.4 5,431,029 - Psyr_4566 0.59 -2.8 5,431,029 - Psyr_4566 0.59 -3.4 5,431,029 - Psyr_4566 0.59 -2.2 5,431,043 + Psyr_4566 0.60 -0.0 5,431,064 - Psyr_4566 0.62 -2.2 5,431,070 + Psyr_4566 0.62 -1.2 5,431,070 + Psyr_4566 0.62 -2.4 5,431,071 - Psyr_4566 0.62 -0.6 5,431,073 + Psyr_4566 0.62 -3.3 5,431,074 - Psyr_4566 0.62 -2.8 5,431,074 - Psyr_4566 0.62 -1.4 5,431,074 - Psyr_4566 0.62 +1.0 5,431,074 - Psyr_4566 0.62 -1.4 5,431,208 + Psyr_4566 0.72 -2.0 5,431,208 + Psyr_4566 0.72 -3.1 5,431,319 + Psyr_4566 0.79 -5.1 5,431,319 + Psyr_4566 0.79 -1.6 5,431,320 - Psyr_4566 0.79 -1.4 5,431,320 - Psyr_4566 0.79 -0.5 5,431,320 - Psyr_4566 0.79 -2.2 5,431,324 + Psyr_4566 0.80 -1.7 5,431,325 - Psyr_4566 0.80 -1.0 5,431,331 + Psyr_4566 0.80 -1.0 5,431,331 + Psyr_4566 0.80 -2.0 5,431,331 + Psyr_4566 0.80 -0.6 5,431,331 + Psyr_4566 0.80 +1.0 5,431,332 - Psyr_4566 0.80 -2.7 5,431,332 - Psyr_4566 0.80 +2.0 5,431,332 - Psyr_4566 0.80 -1.4 5,431,403 + Psyr_4566 0.85 -0.0 5,431,404 - Psyr_4566 0.85 +1.0 5,431,405 + Psyr_4566 0.85 -2.8 5,431,414 + Psyr_4566 0.86 -0.6 5,431,446 - Psyr_4566 0.88 -0.6 5,431,473 + -2.2 5,431,473 + -1.8 5,431,603 + -1.1 5,431,604 - -1.4 5,431,628 + -0.0 5,431,628 + -1.2 5,431,628 + -1.0 5,431,628 + -1.7 5,431,628 + -1.4 5,431,628 + -0.4 5,431,628 + -1.8 5,431,628 + +0.7 5,431,628 + -0.0 5,431,628 + -0.7 5,431,628 + -0.5 5,431,628 + +0.6 5,431,628 + -1.9 5,431,628 + -0.2 5,431,628 + -2.3 5,431,629 - +0.2 5,431,629 - +2.1 5,431,629 - -1.8 5,431,629 - +1.6 5,431,629 - -0.7 5,431,629 - -1.6 5,431,629 - -1.1 5,431,629 - -0.3 5,431,632 + -1.6 5,431,632 + -0.7 5,431,632 + -0.6 5,431,632 + -0.4 5,431,632 + -1.0 5,431,632 + +0.9 5,431,632 + -0.0 5,431,632 + -1.6 5,431,632 + -0.0 5,431,632 + -0.1 5,431,632 + -0.4 5,431,632 + -0.2 5,431,632 + +0.4 5,431,632 + +0.6 5,431,632 + +0.1 5,431,632 + -3.2 5,431,632 + -0.4 5,431,632 + +2.0 5,431,632 + -2.4 5,431,632 + -1.9 5,431,632 + -1.0 5,431,633 - -1.9 5,431,633 - -0.8 5,431,633 - -2.8 5,431,633 - +0.1 5,431,633 - -0.7 5,431,633 - -1.6 5,431,633 - -0.6 5,431,633 - -1.5 5,431,633 - +1.0 5,431,633 - -2.0 5,431,633 - -0.1 5,431,633 - -0.1 5,431,633 - -1.1 5,431,633 - -0.9 5,431,633 - -1.2 5,431,633 - -0.0 5,431,633 - -1.0 5,431,633 - -1.4 5,431,633 - -0.0 5,431,633 - +0.5 5,431,633 - +0.6 5,431,633 - -2.2 5,431,633 - -2.2 5,431,717 + +0.1 5,431,718 + -0.0 5,431,718 + -1.4 5,431,718 + -1.3 5,431,718 + -1.6 5,431,718 + -0.9 5,431,719 - -1.3 5,431,719 - -0.8 5,431,719 - +1.0 5,431,719 - -1.4 5,431,719 - -0.0 5,431,719 - -1.8 5,431,719 - +0.4 5,431,719 - -0.6 5,431,719 - +0.6 5,431,719 - -1.7 5,431,719 - -1.4 5,431,909 + Psyr_4567 0.27 -2.3 5,431,910 - Psyr_4567 0.27 +0.7 5,431,910 - Psyr_4567 0.27 -0.8 5,431,910 - Psyr_4567 0.27 -0.7 5,432,181 + Psyr_4567 0.52 +0.6 5,432,181 + Psyr_4567 0.52 +2.0 5,432,182 - Psyr_4567 0.52 -2.8 5,432,182 - Psyr_4567 0.52 +0.6 5,432,182 - Psyr_4567 0.52 -0.4 5,432,222 + Psyr_4567 0.55 +0.4 5,432,222 + Psyr_4567 0.55 -1.2 5,432,223 - Psyr_4567 0.55 -1.6 5,432,324 - Psyr_4567 0.65 +0.4 5,432,324 - Psyr_4567 0.65 -2.7 5,432,545 + Psyr_4567 0.85 +0.3
Or see this region's nucleotide sequence