Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4517 and Psyr_4518 are separated by 338 nucleotides Psyr_4518 and Psyr_4519 are separated by 9 nucleotides Psyr_4519 and Psyr_4520 are separated by 78 nucleotides
Psyr_4517: Psyr_4517 - SEC-C motif protein, at 5,381,044 to 5,382,201
_4517
Psyr_4518: Psyr_4518 - single-strand binding protein, at 5,382,540 to 5,383,091
_4518
Psyr_4519: Psyr_4519 - General substrate transporter:Major facilitator superfamily, at 5,383,101 to 5,384,495
_4519
Psyr_4520: Psyr_4520 - Excinuclease ABC subunit A, at 5,384,574 to 5,387,459
_4520
Position (kb) 5383
5384
5385 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5382.117 kb on + strand at 5382.117 kb on + strand at 5382.119 kb on + strand at 5382.120 kb on - strand at 5382.120 kb on - strand at 5382.184 kb on - strand at 5382.186 kb on - strand at 5382.186 kb on - strand at 5382.208 kb on + strand at 5382.208 kb on + strand at 5382.209 kb on - strand at 5382.313 kb on + strand at 5382.313 kb on + strand at 5382.314 kb on - strand at 5382.329 kb on + strand at 5382.329 kb on + strand at 5382.473 kb on + strand at 5382.474 kb on - strand at 5382.520 kb on - strand at 5382.520 kb on - strand at 5382.526 kb on + strand at 5382.527 kb on - strand at 5382.527 kb on - strand at 5382.527 kb on - strand at 5382.527 kb on - strand at 5382.532 kb on + strand at 5382.532 kb on + strand at 5382.533 kb on - strand at 5383.180 kb on - strand at 5383.180 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.231 kb on - strand at 5383.231 kb on - strand at 5383.231 kb on - strand at 5383.294 kb on - strand, within Psyr_4519 at 5383.294 kb on - strand, within Psyr_4519 at 5383.294 kb on - strand, within Psyr_4519 at 5383.307 kb on - strand, within Psyr_4519 at 5383.307 kb on - strand, within Psyr_4519 at 5383.307 kb on - strand, within Psyr_4519 at 5383.457 kb on - strand, within Psyr_4519 at 5383.457 kb on - strand, within Psyr_4519 at 5383.605 kb on + strand, within Psyr_4519 at 5383.605 kb on + strand, within Psyr_4519 at 5383.606 kb on - strand, within Psyr_4519 at 5383.606 kb on - strand, within Psyr_4519 at 5383.606 kb on - strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.726 kb on + strand, within Psyr_4519 at 5383.726 kb on + strand, within Psyr_4519 at 5383.909 kb on - strand, within Psyr_4519 at 5383.936 kb on + strand, within Psyr_4519 at 5383.936 kb on + strand, within Psyr_4519 at 5384.162 kb on + strand, within Psyr_4519 at 5384.162 kb on + strand, within Psyr_4519 at 5384.242 kb on + strand, within Psyr_4519 at 5384.242 kb on + strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.317 kb on + strand, within Psyr_4519 at 5384.375 kb on - strand at 5384.471 kb on + strand at 5384.472 kb on - strand at 5384.472 kb on - strand at 5384.500 kb on + strand at 5384.500 kb on + strand at 5384.527 kb on + strand at 5384.528 kb on - strand at 5384.544 kb on + strand at 5384.544 kb on + strand at 5384.544 kb on + strand at 5384.544 kb on + strand at 5384.544 kb on + strand at 5384.544 kb on + strand at 5384.545 kb on - strand at 5384.545 kb on - strand at 5384.553 kb on + strand at 5384.553 kb on + strand at 5384.554 kb on - strand at 5384.554 kb on - strand at 5384.554 kb on - strand at 5384.554 kb on - strand at 5384.554 kb on - strand at 5384.554 kb on - strand at 5384.590 kb on + strand at 5384.590 kb on + strand at 5384.590 kb on + strand at 5384.590 kb on + strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.641 kb on + strand at 5384.641 kb on + strand at 5384.642 kb on - strand at 5384.642 kb on - strand at 5384.673 kb on - strand at 5384.673 kb on - strand at 5384.673 kb on - strand at 5384.760 kb on + strand at 5384.761 kb on - strand at 5384.802 kb on + strand at 5384.891 kb on + strand, within Psyr_4520 at 5384.891 kb on + strand, within Psyr_4520 at 5384.891 kb on + strand, within Psyr_4520 at 5384.891 kb on + strand, within Psyr_4520 at 5384.892 kb on - strand, within Psyr_4520 at 5384.892 kb on - strand, within Psyr_4520 at 5384.892 kb on - strand, within Psyr_4520 at 5384.892 kb on - strand, within Psyr_4520 at 5384.900 kb on + strand, within Psyr_4520 at 5384.901 kb on - strand, within Psyr_4520 at 5384.937 kb on + strand, within Psyr_4520 at 5384.943 kb on + strand, within Psyr_4520 at 5384.944 kb on - strand, within Psyr_4520 at 5384.944 kb on - strand, within Psyr_4520 at 5384.944 kb on - strand, within Psyr_4520 at 5384.944 kb on - strand, within Psyr_4520 at 5384.958 kb on + strand, within Psyr_4520 at 5384.958 kb on + strand, within Psyr_4520 at 5384.959 kb on - strand, within Psyr_4520 at 5384.959 kb on - strand, within Psyr_4520 at 5384.997 kb on - strand, within Psyr_4520 at 5384.997 kb on - strand, within Psyr_4520 at 5385.386 kb on + strand, within Psyr_4520 at 5385.387 kb on - strand, within Psyr_4520
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,382,117 + -1.1 5,382,117 + -1.6 5,382,119 + +0.7 5,382,120 - +1.6 5,382,120 - +1.5 5,382,184 - +2.1 5,382,186 - -0.5 5,382,186 - +0.1 5,382,208 + +0.3 5,382,208 + +0.5 5,382,209 - -0.6 5,382,313 + +0.4 5,382,313 + +0.0 5,382,314 - -0.0 5,382,329 + +3.3 5,382,329 + +1.0 5,382,473 + +0.7 5,382,474 - +0.7 5,382,520 - -1.7 5,382,520 - -0.9 5,382,526 + +1.8 5,382,527 - +0.3 5,382,527 - +1.6 5,382,527 - +2.2 5,382,527 - -0.4 5,382,532 + -0.9 5,382,532 + +1.0 5,382,533 - +1.7 5,383,180 - -3.2 5,383,180 - -0.7 5,383,184 - -0.6 5,383,184 - -1.0 5,383,184 - -2.0 5,383,184 - -1.0 5,383,184 - +0.6 5,383,184 - -0.6 5,383,184 - +3.3 5,383,184 - -0.0 5,383,184 - -1.4 5,383,184 - +1.0 5,383,184 - +0.2 5,383,184 - -1.1 5,383,184 - -1.2 5,383,184 - +0.7 5,383,231 - -2.1 5,383,231 - -0.6 5,383,231 - -0.6 5,383,294 - Psyr_4519 0.14 +0.5 5,383,294 - Psyr_4519 0.14 -1.4 5,383,294 - Psyr_4519 0.14 -0.8 5,383,307 - Psyr_4519 0.15 +0.3 5,383,307 - Psyr_4519 0.15 +0.2 5,383,307 - Psyr_4519 0.15 -0.4 5,383,457 - Psyr_4519 0.26 -3.3 5,383,457 - Psyr_4519 0.26 -3.6 5,383,605 + Psyr_4519 0.36 -0.0 5,383,605 + Psyr_4519 0.36 -4.1 5,383,606 - Psyr_4519 0.36 -2.5 5,383,606 - Psyr_4519 0.36 -3.8 5,383,606 - Psyr_4519 0.36 -2.0 5,383,675 + Psyr_4519 0.41 -3.4 5,383,675 + Psyr_4519 0.41 -1.4 5,383,675 + Psyr_4519 0.41 -1.6 5,383,675 + Psyr_4519 0.41 -3.0 5,383,675 + Psyr_4519 0.41 -2.1 5,383,675 + Psyr_4519 0.41 -4.2 5,383,675 + Psyr_4519 0.41 -3.6 5,383,675 + Psyr_4519 0.41 -2.4 5,383,676 - Psyr_4519 0.41 -1.0 5,383,676 - Psyr_4519 0.41 -3.5 5,383,676 - Psyr_4519 0.41 -3.1 5,383,676 - Psyr_4519 0.41 -2.4 5,383,726 + Psyr_4519 0.45 -0.5 5,383,726 + Psyr_4519 0.45 -4.5 5,383,909 - Psyr_4519 0.58 -2.5 5,383,936 + Psyr_4519 0.60 -2.6 5,383,936 + Psyr_4519 0.60 -2.4 5,384,162 + Psyr_4519 0.76 +0.6 5,384,162 + Psyr_4519 0.76 -2.5 5,384,242 + Psyr_4519 0.82 -4.5 5,384,242 + Psyr_4519 0.82 -3.1 5,384,243 - Psyr_4519 0.82 +1.0 5,384,243 - Psyr_4519 0.82 -1.4 5,384,243 - Psyr_4519 0.82 -1.8 5,384,243 - Psyr_4519 0.82 -4.4 5,384,317 + Psyr_4519 0.87 -1.0 5,384,375 - -1.6 5,384,471 + -1.4 5,384,472 - +1.6 5,384,472 - +3.0 5,384,500 + -2.8 5,384,500 + -1.7 5,384,527 + -1.6 5,384,528 - -0.5 5,384,544 + +0.6 5,384,544 + -0.6 5,384,544 + -0.4 5,384,544 + +3.7 5,384,544 + -0.6 5,384,544 + -1.0 5,384,545 - -0.6 5,384,545 - -0.0 5,384,553 + +0.3 5,384,553 + +0.4 5,384,554 - -1.3 5,384,554 - +0.0 5,384,554 - -0.2 5,384,554 - -0.8 5,384,554 - -1.2 5,384,554 - +0.7 5,384,590 + -0.8 5,384,590 + +0.7 5,384,590 + -0.4 5,384,590 + +1.2 5,384,591 - +0.4 5,384,591 - +0.1 5,384,591 - -0.5 5,384,591 - +2.0 5,384,591 - +0.1 5,384,591 - -0.6 5,384,641 + -0.6 5,384,641 + +0.7 5,384,642 - -0.3 5,384,642 - +1.5 5,384,673 - +0.5 5,384,673 - -0.4 5,384,673 - +2.6 5,384,760 + -1.4 5,384,761 - -0.4 5,384,802 + +1.2 5,384,891 + Psyr_4520 0.11 +1.3 5,384,891 + Psyr_4520 0.11 -0.3 5,384,891 + Psyr_4520 0.11 -1.0 5,384,891 + Psyr_4520 0.11 +1.0 5,384,892 - Psyr_4520 0.11 -0.1 5,384,892 - Psyr_4520 0.11 -0.1 5,384,892 - Psyr_4520 0.11 +1.3 5,384,892 - Psyr_4520 0.11 -0.9 5,384,900 + Psyr_4520 0.11 -0.2 5,384,901 - Psyr_4520 0.11 +0.3 5,384,937 + Psyr_4520 0.13 -0.5 5,384,943 + Psyr_4520 0.13 -2.5 5,384,944 - Psyr_4520 0.13 +0.1 5,384,944 - Psyr_4520 0.13 -0.0 5,384,944 - Psyr_4520 0.13 +1.8 5,384,944 - Psyr_4520 0.13 +3.3 5,384,958 + Psyr_4520 0.13 +0.8 5,384,958 + Psyr_4520 0.13 +0.3 5,384,959 - Psyr_4520 0.13 +0.1 5,384,959 - Psyr_4520 0.13 +1.2 5,384,997 - Psyr_4520 0.15 +0.2 5,384,997 - Psyr_4520 0.15 +0.2 5,385,386 + Psyr_4520 0.28 -0.3 5,385,387 - Psyr_4520 0.28 +0.1
Or see this region's nucleotide sequence