Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4417 and Psyr_4418 are separated by 135 nucleotides Psyr_4418 and Psyr_4419 overlap by 1 nucleotides
Psyr_4417: Psyr_4417 - Ferredoxin--nitrite reductase, at 5,280,617 to 5,281,960
_4417
Psyr_4418: Psyr_4418 - Precorrin-6Y C5,15-methyltransferase (decarboxylating), at 5,282,096 to 5,283,298
_4418
Psyr_4419: Psyr_4419 - Cobalamin (vitamin B12) biosynthesis CbiD protein, at 5,283,298 to 5,284,410
_4419
Position (kb) 5282
5283
5284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5281.788 kb on + strand, within Psyr_4417 at 5281.789 kb on - strand, within Psyr_4417 at 5282.001 kb on + strand at 5282.001 kb on + strand at 5282.002 kb on - strand at 5282.012 kb on + strand at 5282.013 kb on - strand at 5282.032 kb on + strand at 5282.032 kb on + strand at 5282.033 kb on - strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.089 kb on + strand at 5282.090 kb on - strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.093 kb on + strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.094 kb on - strand at 5282.139 kb on - strand at 5282.408 kb on + strand, within Psyr_4418 at 5282.408 kb on + strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418 at 5282.803 kb on - strand, within Psyr_4418 at 5283.208 kb on + strand at 5283.591 kb on - strand, within Psyr_4419 at 5283.727 kb on + strand, within Psyr_4419 at 5283.728 kb on - strand, within Psyr_4419 at 5283.728 kb on - strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.874 kb on - strand, within Psyr_4419 at 5283.977 kb on - strand, within Psyr_4419
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,281,788 + Psyr_4417 0.87 +1.6 5,281,789 - Psyr_4417 0.87 -0.1 5,282,001 + -2.1 5,282,001 + -0.7 5,282,002 - -0.1 5,282,012 + +1.2 5,282,013 - +0.3 5,282,032 + -0.8 5,282,032 + -0.6 5,282,033 - +1.3 5,282,089 + +0.4 5,282,089 + -0.3 5,282,089 + +0.3 5,282,089 + -0.2 5,282,089 + +1.0 5,282,089 + -0.1 5,282,090 - -1.8 5,282,093 + -0.3 5,282,093 + +0.6 5,282,093 + +1.2 5,282,093 + +0.0 5,282,093 + -0.1 5,282,093 + -0.2 5,282,093 + -0.6 5,282,093 + +0.0 5,282,093 + -1.2 5,282,093 + -0.6 5,282,093 + +1.0 5,282,093 + +0.3 5,282,093 + -0.3 5,282,093 + -0.3 5,282,093 + +0.4 5,282,093 + +0.8 5,282,093 + -1.8 5,282,093 + +1.7 5,282,093 + -0.1 5,282,093 + -1.6 5,282,093 + -0.6 5,282,093 + +0.2 5,282,094 - +1.0 5,282,094 - -1.1 5,282,094 - -0.7 5,282,094 - -1.1 5,282,094 - -1.4 5,282,094 - -0.3 5,282,094 - +0.2 5,282,094 - +0.9 5,282,094 - -2.3 5,282,094 - +0.5 5,282,094 - -1.1 5,282,094 - -0.7 5,282,094 - -0.9 5,282,094 - -0.6 5,282,094 - +2.3 5,282,139 - +0.9 5,282,408 + Psyr_4418 0.26 -0.8 5,282,408 + Psyr_4418 0.26 -1.7 5,282,409 - Psyr_4418 0.26 -0.4 5,282,409 - Psyr_4418 0.26 +0.5 5,282,803 - Psyr_4418 0.59 -1.4 5,283,208 + -0.3 5,283,591 - Psyr_4419 0.26 -0.5 5,283,727 + Psyr_4419 0.39 -0.5 5,283,728 - Psyr_4419 0.39 -0.3 5,283,728 - Psyr_4419 0.39 +0.9 5,283,871 + Psyr_4419 0.51 -1.2 5,283,871 + Psyr_4419 0.51 -0.1 5,283,871 + Psyr_4419 0.51 -1.2 5,283,871 + Psyr_4419 0.51 +0.9 5,283,871 + Psyr_4419 0.51 +0.6 5,283,872 - Psyr_4419 0.52 -1.4 5,283,872 - Psyr_4419 0.52 +0.0 5,283,872 - Psyr_4419 0.52 -1.1 5,283,872 - Psyr_4419 0.52 -0.2 5,283,874 - Psyr_4419 0.52 +2.1 5,283,977 - Psyr_4419 0.61 +1.7
Or see this region's nucleotide sequence