Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4380

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4378 and Psyr_4379 overlap by 1 nucleotidesPsyr_4379 and Psyr_4380 are separated by 188 nucleotidesPsyr_4380 and Psyr_4381 are separated by 88 nucleotides Psyr_4378: Psyr_4378 - conserved hypothetical protein, at 5,234,472 to 5,235,551 _4378 Psyr_4379: Psyr_4379 - NUDIX hydrolase, at 5,235,551 to 5,236,096 _4379 Psyr_4380: Psyr_4380 - translation initiation factor 1 (eIF-1/SUI1), at 5,236,285 to 5,236,656 _4380 Psyr_4381: Psyr_4381 - arginine decarboxylase, at 5,236,745 to 5,238,658 _4381 Position (kb) 5236 5237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5235.349 kb on + strand, within Psyr_4378at 5235.349 kb on + strand, within Psyr_4378at 5235.349 kb on + strand, within Psyr_4378at 5235.349 kb on + strand, within Psyr_4378at 5235.350 kb on - strand, within Psyr_4378at 5235.350 kb on - strand, within Psyr_4378at 5235.350 kb on - strand, within Psyr_4378at 5235.350 kb on - strand, within Psyr_4378at 5235.492 kb on + strandat 5235.492 kb on + strandat 5235.492 kb on + strandat 5235.492 kb on + strandat 5235.492 kb on + strandat 5235.492 kb on + strandat 5235.492 kb on + strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.493 kb on - strandat 5235.558 kb on + strandat 5235.559 kb on - strandat 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.692 kb on + strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.693 kb on - strand, within Psyr_4379at 5235.694 kb on + strand, within Psyr_4379at 5235.694 kb on + strand, within Psyr_4379at 5235.695 kb on - strand, within Psyr_4379at 5235.758 kb on + strand, within Psyr_4379at 5235.758 kb on + strand, within Psyr_4379at 5235.759 kb on - strand, within Psyr_4379at 5235.759 kb on - strand, within Psyr_4379at 5235.777 kb on + strand, within Psyr_4379at 5235.812 kb on + strand, within Psyr_4379at 5235.812 kb on + strand, within Psyr_4379at 5235.813 kb on - strand, within Psyr_4379at 5235.940 kb on - strand, within Psyr_4379at 5236.027 kb on + strand, within Psyr_4379at 5236.027 kb on + strand, within Psyr_4379at 5236.027 kb on + strand, within Psyr_4379at 5236.028 kb on - strand, within Psyr_4379at 5236.028 kb on - strand, within Psyr_4379at 5236.028 kb on - strand, within Psyr_4379at 5236.068 kb on - strandat 5236.072 kb on + strandat 5236.073 kb on - strandat 5236.080 kb on + strandat 5236.081 kb on - strandat 5236.241 kb on + strandat 5236.328 kb on + strand, within Psyr_4380at 5236.328 kb on + strand, within Psyr_4380at 5236.329 kb on - strand, within Psyr_4380at 5236.434 kb on - strand, within Psyr_4380at 5236.434 kb on - strand, within Psyr_4380at 5236.434 kb on - strand, within Psyr_4380at 5236.639 kb on - strandat 5236.688 kb on + strandat 5236.688 kb on + strandat 5236.688 kb on + strandat 5236.689 kb on - strandat 5236.689 kb on - strandat 5236.689 kb on - strandat 5236.689 kb on - strandat 5236.727 kb on + strandat 5236.727 kb on + strandat 5236.727 kb on + strandat 5236.728 kb on - strandat 5236.728 kb on - strandat 5236.728 kb on - strandat 5236.728 kb on - strandat 5236.728 kb on - strandat 5236.728 kb on - strandat 5236.728 kb on - strandat 5236.731 kb on + strandat 5236.731 kb on + strandat 5236.731 kb on + strandat 5236.731 kb on + strandat 5236.731 kb on + strandat 5236.731 kb on + strandat 5236.731 kb on + strandat 5236.732 kb on - strandat 5236.732 kb on - strandat 5236.732 kb on - strandat 5236.765 kb on + strandat 5236.765 kb on + strandat 5236.765 kb on + strandat 5236.765 kb on + strandat 5236.765 kb on + strandat 5236.765 kb on + strandat 5236.766 kb on - strandat 5236.766 kb on - strandat 5236.839 kb on - strandat 5236.846 kb on + strandat 5236.910 kb on + strandat 5236.911 kb on - strandat 5237.051 kb on + strand, within Psyr_4381at 5237.051 kb on + strand, within Psyr_4381at 5237.051 kb on + strand, within Psyr_4381at 5237.052 kb on - strand, within Psyr_4381at 5237.052 kb on - strand, within Psyr_4381at 5237.213 kb on + strand, within Psyr_4381at 5237.361 kb on + strand, within Psyr_4381at 5237.570 kb on + strand, within Psyr_4381at 5237.573 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.609 kb on + strand, within Psyr_4381at 5237.610 kb on - strand, within Psyr_4381at 5237.610 kb on - strand, within Psyr_4381at 5237.610 kb on - strand, within Psyr_4381at 5237.610 kb on - strand, within Psyr_4381at 5237.610 kb on - strand, within Psyr_4381at 5237.610 kb on - strand, within Psyr_4381at 5237.610 kb on - strand, within Psyr_4381

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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5,235,349 + Psyr_4378 0.81 +1.4
5,235,349 + Psyr_4378 0.81 -0.8
5,235,349 + Psyr_4378 0.81 -1.3
5,235,349 + Psyr_4378 0.81 +0.0
5,235,350 - Psyr_4378 0.81 +1.3
5,235,350 - Psyr_4378 0.81 -1.2
5,235,350 - Psyr_4378 0.81 -0.1
5,235,350 - Psyr_4378 0.81 -0.3
5,235,492 + +0.7
5,235,492 + -0.2
5,235,492 + -1.2
5,235,492 + +0.5
5,235,492 + -0.7
5,235,492 + -1.0
5,235,492 + -0.8
5,235,493 - -1.7
5,235,493 - -1.3
5,235,493 - +0.9
5,235,493 - -0.0
5,235,493 - +0.0
5,235,493 - +0.9
5,235,493 - -0.9
5,235,493 - +0.2
5,235,493 - +0.2
5,235,493 - -0.7
5,235,493 - -0.6
5,235,493 - -0.2
5,235,493 - -0.7
5,235,493 - -1.7
5,235,493 - -2.0
5,235,493 - +1.1
5,235,558 + +0.0
5,235,559 - +0.2
5,235,692 + Psyr_4379 0.26 -0.0
5,235,692 + Psyr_4379 0.26 -1.0
5,235,692 + Psyr_4379 0.26 +0.4
5,235,692 + Psyr_4379 0.26 +0.1
5,235,692 + Psyr_4379 0.26 -1.6
5,235,692 + Psyr_4379 0.26 -1.1
5,235,692 + Psyr_4379 0.26 -0.3
5,235,692 + Psyr_4379 0.26 -0.2
5,235,692 + Psyr_4379 0.26 -1.9
5,235,692 + Psyr_4379 0.26 +2.0
5,235,692 + Psyr_4379 0.26 +0.4
5,235,692 + Psyr_4379 0.26 -0.5
5,235,692 + Psyr_4379 0.26 +0.7
5,235,692 + Psyr_4379 0.26 -0.8
5,235,692 + Psyr_4379 0.26 -0.3
5,235,692 + Psyr_4379 0.26 +0.2
5,235,692 + Psyr_4379 0.26 +1.3
5,235,692 + Psyr_4379 0.26 +0.5
5,235,692 + Psyr_4379 0.26 +0.4
5,235,692 + Psyr_4379 0.26 +1.7
5,235,692 + Psyr_4379 0.26 -0.0
5,235,692 + Psyr_4379 0.26 +0.6
5,235,693 - Psyr_4379 0.26 -0.9
5,235,693 - Psyr_4379 0.26 -0.2
5,235,693 - Psyr_4379 0.26 +0.4
5,235,693 - Psyr_4379 0.26 +0.2
5,235,693 - Psyr_4379 0.26 -0.3
5,235,693 - Psyr_4379 0.26 -0.1
5,235,693 - Psyr_4379 0.26 -0.1
5,235,693 - Psyr_4379 0.26 -0.2
5,235,693 - Psyr_4379 0.26 +0.1
5,235,693 - Psyr_4379 0.26 -0.5
5,235,693 - Psyr_4379 0.26 -0.4
5,235,693 - Psyr_4379 0.26 +1.1
5,235,693 - Psyr_4379 0.26 +0.7
5,235,693 - Psyr_4379 0.26 +0.4
5,235,693 - Psyr_4379 0.26 +2.0
5,235,693 - Psyr_4379 0.26 +0.7
5,235,693 - Psyr_4379 0.26 -0.8
5,235,693 - Psyr_4379 0.26 -0.2
5,235,693 - Psyr_4379 0.26 +0.3
5,235,694 + Psyr_4379 0.26 +0.4
5,235,694 + Psyr_4379 0.26 +2.2
5,235,695 - Psyr_4379 0.26 +1.0
5,235,758 + Psyr_4379 0.38 -0.5
5,235,758 + Psyr_4379 0.38 -0.2
5,235,759 - Psyr_4379 0.38 -1.2
5,235,759 - Psyr_4379 0.38 +1.3
5,235,777 + Psyr_4379 0.41 +0.0
5,235,812 + Psyr_4379 0.48 +1.1
5,235,812 + Psyr_4379 0.48 -1.0
5,235,813 - Psyr_4379 0.48 +1.0
5,235,940 - Psyr_4379 0.71 +0.6
5,236,027 + Psyr_4379 0.87 +0.3
5,236,027 + Psyr_4379 0.87 -2.6
5,236,027 + Psyr_4379 0.87 +1.2
5,236,028 - Psyr_4379 0.87 +1.5
5,236,028 - Psyr_4379 0.87 -0.9
5,236,028 - Psyr_4379 0.87 +0.4
5,236,068 - +0.1
5,236,072 + -0.6
5,236,073 - -1.3
5,236,080 + -0.1
5,236,081 - -0.7
5,236,241 + +0.3
5,236,328 + Psyr_4380 0.12 -0.5
5,236,328 + Psyr_4380 0.12 +0.9
5,236,329 - Psyr_4380 0.12 -2.1
5,236,434 - Psyr_4380 0.40 -3.2
5,236,434 - Psyr_4380 0.40 +0.5
5,236,434 - Psyr_4380 0.40 -1.6
5,236,639 - +0.8
5,236,688 + +0.5
5,236,688 + -1.0
5,236,688 + +0.3
5,236,689 - +0.4
5,236,689 - +0.1
5,236,689 - +0.6
5,236,689 - -1.9
5,236,727 + -0.8
5,236,727 + +0.1
5,236,727 + +0.9
5,236,728 - -0.3
5,236,728 - +0.4
5,236,728 - -1.3
5,236,728 - -0.2
5,236,728 - +0.2
5,236,728 - -0.8
5,236,728 - +0.2
5,236,731 + +0.2
5,236,731 + -0.3
5,236,731 + +3.0
5,236,731 + +0.4
5,236,731 + -0.5
5,236,731 + -0.4
5,236,731 + -1.4
5,236,732 - -0.4
5,236,732 - -0.8
5,236,732 - +0.2
5,236,765 + +0.1
5,236,765 + +1.7
5,236,765 + -1.5
5,236,765 + -0.8
5,236,765 + +0.8
5,236,765 + +0.0
5,236,766 - +0.1
5,236,766 - -0.3
5,236,839 - -0.6
5,236,846 + -2.4
5,236,910 + +0.6
5,236,911 - -0.9
5,237,051 + Psyr_4381 0.16 -1.3
5,237,051 + Psyr_4381 0.16 +0.4
5,237,051 + Psyr_4381 0.16 -0.7
5,237,052 - Psyr_4381 0.16 +0.6
5,237,052 - Psyr_4381 0.16 -0.6
5,237,213 + Psyr_4381 0.24 -1.3
5,237,361 + Psyr_4381 0.32 +1.5
5,237,570 + Psyr_4381 0.43 -0.9
5,237,573 + Psyr_4381 0.43 +1.5
5,237,609 + Psyr_4381 0.45 -1.2
5,237,609 + Psyr_4381 0.45 +0.1
5,237,609 + Psyr_4381 0.45 -1.3
5,237,609 + Psyr_4381 0.45 -1.1
5,237,609 + Psyr_4381 0.45 -0.3
5,237,609 + Psyr_4381 0.45 -1.2
5,237,609 + Psyr_4381 0.45 -0.9
5,237,609 + Psyr_4381 0.45 +0.0
5,237,610 - Psyr_4381 0.45 -0.4
5,237,610 - Psyr_4381 0.45 -0.8
5,237,610 - Psyr_4381 0.45 -0.9
5,237,610 - Psyr_4381 0.45 -1.5
5,237,610 - Psyr_4381 0.45 -1.7
5,237,610 - Psyr_4381 0.45 -0.7
5,237,610 - Psyr_4381 0.45 +1.9

Or see this region's nucleotide sequence