Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4343 and Psyr_4344 are separated by 42 nucleotides Psyr_4344 and Psyr_4345 are separated by 139 nucleotides Psyr_4345 and Psyr_4346 are separated by 176 nucleotides
Psyr_4343: Psyr_4343 - Sel1-like repeat protein, at 5,197,241 to 5,197,789
_4343
Psyr_4344: Psyr_4344 - conserved hypothetical protein, at 5,197,832 to 5,198,158
_4344
Psyr_4345: Psyr_4345 - tRNA-i(6)A37 thiotransferase enzyme MiaB, at 5,198,298 to 5,199,626
_4345
Psyr_4346: Psyr_4346 - PhoH-like protein, at 5,199,803 to 5,200,825
_4346
Position (kb) 5198
5199
5200 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5197.326 kb on + strand, within Psyr_4343 at 5197.327 kb on - strand, within Psyr_4343 at 5197.433 kb on + strand, within Psyr_4343 at 5197.433 kb on + strand, within Psyr_4343 at 5197.434 kb on - strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.454 kb on + strand, within Psyr_4343 at 5197.455 kb on - strand, within Psyr_4343 at 5197.499 kb on + strand, within Psyr_4343 at 5197.500 kb on - strand, within Psyr_4343 at 5197.601 kb on + strand, within Psyr_4343 at 5197.601 kb on + strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.733 kb on + strand, within Psyr_4343 at 5197.733 kb on + strand, within Psyr_4343 at 5197.733 kb on + strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.833 kb on + strand at 5197.834 kb on - strand at 5197.834 kb on - strand at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5198.076 kb on + strand, within Psyr_4344 at 5198.077 kb on - strand, within Psyr_4344 at 5198.077 kb on - strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.134 kb on - strand at 5198.134 kb on - strand at 5198.200 kb on + strand at 5198.200 kb on + strand at 5198.200 kb on + strand at 5198.201 kb on - strand at 5198.201 kb on - strand at 5198.201 kb on - strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.260 kb on + strand at 5198.260 kb on + strand at 5198.260 kb on + strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.313 kb on + strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.346 kb on + strand at 5198.438 kb on + strand, within Psyr_4345 at 5198.439 kb on - strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.775 kb on + strand, within Psyr_4345 at 5198.776 kb on - strand, within Psyr_4345 at 5198.776 kb on - strand, within Psyr_4345 at 5198.800 kb on - strand, within Psyr_4345 at 5199.004 kb on - strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.153 kb on + strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.154 kb on - strand, within Psyr_4345 at 5199.471 kb on + strand, within Psyr_4345 at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.574 kb on + strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.575 kb on - strand at 5199.619 kb on + strand at 5199.619 kb on + strand at 5199.624 kb on + strand at 5199.624 kb on + strand at 5199.624 kb on + strand at 5199.625 kb on - strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5199.766 kb on + strand at 5200.024 kb on + strand, within Psyr_4346 at 5200.169 kb on + strand, within Psyr_4346 at 5200.235 kb on + strand, within Psyr_4346 at 5200.235 kb on + strand, within Psyr_4346 at 5200.385 kb on + strand, within Psyr_4346 at 5200.385 kb on + strand, within Psyr_4346 at 5200.397 kb on + strand, within Psyr_4346 at 5200.418 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.469 kb on + strand, within Psyr_4346 at 5200.489 kb on + strand, within Psyr_4346 at 5200.489 kb on + strand, within Psyr_4346
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,197,326 + Psyr_4343 0.15 -0.1 5,197,327 - Psyr_4343 0.16 +1.3 5,197,433 + Psyr_4343 0.35 +1.0 5,197,433 + Psyr_4343 0.35 +0.7 5,197,434 - Psyr_4343 0.35 +1.1 5,197,451 + Psyr_4343 0.38 +1.8 5,197,451 + Psyr_4343 0.38 +1.4 5,197,451 + Psyr_4343 0.38 +1.7 5,197,451 + Psyr_4343 0.38 +0.5 5,197,452 - Psyr_4343 0.38 +1.4 5,197,452 - Psyr_4343 0.38 +1.6 5,197,452 - Psyr_4343 0.38 -0.0 5,197,452 - Psyr_4343 0.38 +0.6 5,197,454 + Psyr_4343 0.39 +2.2 5,197,455 - Psyr_4343 0.39 +3.3 5,197,499 + Psyr_4343 0.47 +0.8 5,197,500 - Psyr_4343 0.47 +1.4 5,197,601 + Psyr_4343 0.66 +1.4 5,197,601 + Psyr_4343 0.66 +0.9 5,197,602 - Psyr_4343 0.66 +0.7 5,197,602 - Psyr_4343 0.66 +1.4 5,197,602 - Psyr_4343 0.66 +1.4 5,197,602 - Psyr_4343 0.66 +2.2 5,197,733 + Psyr_4343 0.90 +0.5 5,197,733 + Psyr_4343 0.90 -1.3 5,197,733 + Psyr_4343 0.90 +0.1 5,197,734 - Psyr_4343 0.90 -1.7 5,197,734 - Psyr_4343 0.90 -0.1 5,197,734 - Psyr_4343 0.90 -0.1 5,197,734 - Psyr_4343 0.90 +0.5 5,197,833 + +1.2 5,197,834 - +1.7 5,197,834 - +0.6 5,197,865 + Psyr_4344 0.10 -0.2 5,197,865 + Psyr_4344 0.10 -1.0 5,197,865 + Psyr_4344 0.10 +0.5 5,197,865 + Psyr_4344 0.10 +0.9 5,197,865 + Psyr_4344 0.10 +0.4 5,197,865 + Psyr_4344 0.10 +0.6 5,197,865 + Psyr_4344 0.10 -0.2 5,197,865 + Psyr_4344 0.10 +0.2 5,197,865 + Psyr_4344 0.10 -0.9 5,197,866 - Psyr_4344 0.10 -0.6 5,197,866 - Psyr_4344 0.10 -0.7 5,197,866 - Psyr_4344 0.10 +0.0 5,197,866 - Psyr_4344 0.10 +0.2 5,197,866 - Psyr_4344 0.10 -0.7 5,197,866 - Psyr_4344 0.10 -0.6 5,197,866 - Psyr_4344 0.10 -2.0 5,198,076 + Psyr_4344 0.75 +3.6 5,198,077 - Psyr_4344 0.75 -1.5 5,198,077 - Psyr_4344 0.75 -0.1 5,198,091 + Psyr_4344 0.79 +0.5 5,198,091 + Psyr_4344 0.79 +0.6 5,198,091 + Psyr_4344 0.79 +1.0 5,198,091 + Psyr_4344 0.79 +0.1 5,198,091 + Psyr_4344 0.79 +0.1 5,198,092 - Psyr_4344 0.80 +0.2 5,198,092 - Psyr_4344 0.80 +0.2 5,198,092 - Psyr_4344 0.80 -0.1 5,198,092 - Psyr_4344 0.80 -1.6 5,198,092 - Psyr_4344 0.80 +1.4 5,198,133 + +0.3 5,198,133 + -1.4 5,198,133 + +0.1 5,198,133 + +1.4 5,198,133 + -1.5 5,198,134 - +0.4 5,198,134 - +0.4 5,198,200 + +0.5 5,198,200 + +0.9 5,198,200 + -0.2 5,198,201 - +1.4 5,198,201 - +1.0 5,198,201 - +0.5 5,198,202 + -0.2 5,198,202 + +0.1 5,198,202 + +0.2 5,198,202 + +0.0 5,198,202 + +0.7 5,198,202 + +0.2 5,198,202 + +0.3 5,198,202 + +0.9 5,198,202 + +1.3 5,198,202 + +0.4 5,198,202 + +0.1 5,198,202 + +1.7 5,198,202 + -0.5 5,198,202 + -0.2 5,198,202 + +1.4 5,198,202 + +3.6 5,198,203 - +0.5 5,198,203 - +0.4 5,198,203 - +0.9 5,198,203 - -0.4 5,198,203 - +0.0 5,198,203 - +0.2 5,198,203 - +4.7 5,198,203 - +0.4 5,198,260 + +0.6 5,198,260 + -1.2 5,198,260 + -0.6 5,198,261 - +0.1 5,198,261 - +2.0 5,198,261 - -0.8 5,198,261 - +0.2 5,198,261 - +1.3 5,198,262 + +1.0 5,198,262 + +1.8 5,198,262 + +1.0 5,198,262 + -0.7 5,198,262 + -0.1 5,198,262 + +0.1 5,198,262 + +0.0 5,198,262 + -0.1 5,198,263 - +0.8 5,198,263 - -0.2 5,198,263 - +1.2 5,198,263 - -0.9 5,198,263 - +0.6 5,198,263 - +3.0 5,198,263 - +1.3 5,198,313 + -0.2 5,198,314 - +3.2 5,198,314 - +1.3 5,198,314 - -0.1 5,198,314 - -0.1 5,198,314 - -0.8 5,198,346 + -1.3 5,198,438 + Psyr_4345 0.11 -0.7 5,198,439 - Psyr_4345 0.11 +0.5 5,198,589 + Psyr_4345 0.22 +0.2 5,198,589 + Psyr_4345 0.22 -0.4 5,198,589 + Psyr_4345 0.22 -0.1 5,198,589 + Psyr_4345 0.22 +1.3 5,198,590 - Psyr_4345 0.22 +0.6 5,198,590 - Psyr_4345 0.22 -0.5 5,198,590 - Psyr_4345 0.22 +1.0 5,198,590 - Psyr_4345 0.22 -0.6 5,198,590 - Psyr_4345 0.22 -1.2 5,198,745 + Psyr_4345 0.34 -1.5 5,198,745 + Psyr_4345 0.34 -0.0 5,198,745 + Psyr_4345 0.34 -0.6 5,198,745 + Psyr_4345 0.34 +1.7 5,198,745 + Psyr_4345 0.34 +0.1 5,198,745 + Psyr_4345 0.34 +0.6 5,198,745 + Psyr_4345 0.34 +0.5 5,198,745 + Psyr_4345 0.34 +0.4 5,198,745 + Psyr_4345 0.34 -0.7 5,198,745 + Psyr_4345 0.34 -0.2 5,198,745 + Psyr_4345 0.34 -0.2 5,198,745 + Psyr_4345 0.34 -0.1 5,198,745 + Psyr_4345 0.34 -1.8 5,198,745 + Psyr_4345 0.34 +0.3 5,198,745 + Psyr_4345 0.34 -2.2 5,198,746 - Psyr_4345 0.34 -0.8 5,198,746 - Psyr_4345 0.34 +0.1 5,198,746 - Psyr_4345 0.34 +0.7 5,198,746 - Psyr_4345 0.34 -0.2 5,198,746 - Psyr_4345 0.34 +1.0 5,198,746 - Psyr_4345 0.34 -0.0 5,198,746 - Psyr_4345 0.34 +1.8 5,198,746 - Psyr_4345 0.34 +0.3 5,198,746 - Psyr_4345 0.34 +0.1 5,198,746 - Psyr_4345 0.34 -1.1 5,198,746 - Psyr_4345 0.34 +0.1 5,198,746 - Psyr_4345 0.34 -0.2 5,198,746 - Psyr_4345 0.34 +0.2 5,198,746 - Psyr_4345 0.34 +1.6 5,198,746 - Psyr_4345 0.34 +0.9 5,198,746 - Psyr_4345 0.34 -0.8 5,198,775 + Psyr_4345 0.36 +1.0 5,198,776 - Psyr_4345 0.36 +0.1 5,198,776 - Psyr_4345 0.36 -0.7 5,198,800 - Psyr_4345 0.38 -0.3 5,199,004 - Psyr_4345 0.53 +0.2 5,199,153 + Psyr_4345 0.64 +3.0 5,199,153 + Psyr_4345 0.64 +0.0 5,199,153 + Psyr_4345 0.64 +0.3 5,199,153 + Psyr_4345 0.64 -0.6 5,199,153 + Psyr_4345 0.64 +0.6 5,199,153 + Psyr_4345 0.64 +0.6 5,199,154 - Psyr_4345 0.64 +0.5 5,199,154 - Psyr_4345 0.64 +0.7 5,199,154 - Psyr_4345 0.64 +0.4 5,199,154 - Psyr_4345 0.64 -1.6 5,199,154 - Psyr_4345 0.64 -0.5 5,199,154 - Psyr_4345 0.64 +0.9 5,199,154 - Psyr_4345 0.64 -1.8 5,199,471 + Psyr_4345 0.88 +0.5 5,199,574 + +0.5 5,199,574 + +0.1 5,199,574 + +0.0 5,199,574 + -0.1 5,199,574 + -0.4 5,199,574 + -0.7 5,199,574 + +1.3 5,199,574 + -1.3 5,199,574 + -0.5 5,199,575 - -0.7 5,199,575 - -1.0 5,199,575 - +0.2 5,199,575 - +0.4 5,199,575 - -0.1 5,199,575 - +0.1 5,199,575 - +1.5 5,199,575 - +1.5 5,199,575 - -1.7 5,199,575 - +0.0 5,199,575 - -0.1 5,199,619 + -1.1 5,199,619 + +1.4 5,199,624 + +0.6 5,199,624 + -2.2 5,199,624 + +1.4 5,199,625 - -0.5 5,199,766 + +1.4 5,199,766 + -1.0 5,199,766 + +0.2 5,199,766 + +0.4 5,199,766 + -0.2 5,199,766 + +0.5 5,199,766 + -1.0 5,199,766 + +0.0 5,200,024 + Psyr_4346 0.22 -2.2 5,200,169 + Psyr_4346 0.36 +0.4 5,200,235 + Psyr_4346 0.42 -0.5 5,200,235 + Psyr_4346 0.42 +0.7 5,200,385 + Psyr_4346 0.57 +0.4 5,200,385 + Psyr_4346 0.57 +0.7 5,200,397 + Psyr_4346 0.58 +1.6 5,200,418 + Psyr_4346 0.60 -1.3 5,200,469 + Psyr_4346 0.65 +0.8 5,200,469 + Psyr_4346 0.65 -0.3 5,200,469 + Psyr_4346 0.65 +0.4 5,200,469 + Psyr_4346 0.65 +0.7 5,200,469 + Psyr_4346 0.65 +0.5 5,200,469 + Psyr_4346 0.65 +2.4 5,200,469 + Psyr_4346 0.65 -2.1 5,200,489 + Psyr_4346 0.67 -1.1 5,200,489 + Psyr_4346 0.67 -0.1
Or see this region's nucleotide sequence