Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4330 and Psyr_4331 are separated by 153 nucleotides Psyr_4331 and Psyr_4332 are separated by 274 nucleotides Psyr_4332 and Psyr_4333 are separated by 25 nucleotides
Psyr_4330: Psyr_4330 - conserved domain protein, at 5,181,945 to 5,182,838
_4330
Psyr_4331: Psyr_4331 - galactose 1-dehydrogenase, at 5,182,992 to 5,183,918
_4331
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Position (kb) 5182
5183
5184 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5182.174 kb on + strand, within Psyr_4330 at 5182.174 kb on + strand, within Psyr_4330 at 5182.174 kb on + strand, within Psyr_4330 at 5182.174 kb on + strand, within Psyr_4330 at 5182.175 kb on - strand, within Psyr_4330 at 5182.175 kb on - strand, within Psyr_4330 at 5182.318 kb on + strand, within Psyr_4330 at 5182.319 kb on - strand, within Psyr_4330 at 5182.327 kb on + strand, within Psyr_4330 at 5182.327 kb on + strand, within Psyr_4330 at 5182.330 kb on + strand, within Psyr_4330 at 5182.330 kb on + strand, within Psyr_4330 at 5182.331 kb on - strand, within Psyr_4330 at 5182.782 kb on + strand at 5182.782 kb on + strand at 5182.783 kb on - strand at 5182.783 kb on - strand at 5182.783 kb on - strand at 5182.853 kb on + strand at 5182.853 kb on + strand at 5182.854 kb on - strand at 5182.866 kb on + strand at 5182.867 kb on - strand at 5182.872 kb on + strand at 5182.872 kb on + strand at 5182.872 kb on + strand at 5182.873 kb on - strand at 5182.873 kb on - strand at 5182.942 kb on + strand at 5182.942 kb on + strand at 5182.942 kb on + strand at 5182.943 kb on - strand at 5182.943 kb on - strand at 5182.943 kb on - strand at 5182.956 kb on + strand at 5182.978 kb on + strand at 5182.978 kb on + strand at 5182.979 kb on - strand at 5182.994 kb on - strand at 5182.994 kb on - strand at 5182.999 kb on + strand at 5182.999 kb on + strand at 5183.000 kb on - strand at 5183.113 kb on + strand, within Psyr_4331 at 5183.720 kb on + strand, within Psyr_4331 at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.959 kb on - strand at 5183.983 kb on + strand at 5184.098 kb on + strand at 5184.099 kb on - strand at 5184.133 kb on + strand at 5184.134 kb on - strand at 5184.140 kb on - strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.274 kb on + strand, within Psyr_4332 at 5184.274 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.355 kb on - strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.561 kb on + strand, within Psyr_4332 at 5184.561 kb on + strand, within Psyr_4332 at 5184.562 kb on - strand, within Psyr_4332 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.860 kb on + strand, within Psyr_4333
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 5,182,174 + Psyr_4330 0.26 +0.2 5,182,174 + Psyr_4330 0.26 +0.6 5,182,174 + Psyr_4330 0.26 -1.1 5,182,174 + Psyr_4330 0.26 -0.9 5,182,175 - Psyr_4330 0.26 +0.2 5,182,175 - Psyr_4330 0.26 -0.0 5,182,318 + Psyr_4330 0.42 -0.4 5,182,319 - Psyr_4330 0.42 +0.1 5,182,327 + Psyr_4330 0.43 -0.8 5,182,327 + Psyr_4330 0.43 -0.0 5,182,330 + Psyr_4330 0.43 +0.3 5,182,330 + Psyr_4330 0.43 -0.0 5,182,331 - Psyr_4330 0.43 -0.2 5,182,782 + +0.6 5,182,782 + +0.1 5,182,783 - +0.2 5,182,783 - +0.3 5,182,783 - -0.3 5,182,853 + +0.4 5,182,853 + -1.8 5,182,854 - -0.0 5,182,866 + -0.8 5,182,867 - +0.3 5,182,872 + +0.8 5,182,872 + +0.5 5,182,872 + -0.6 5,182,873 - -0.4 5,182,873 - -0.3 5,182,942 + -0.6 5,182,942 + +0.5 5,182,942 + +0.5 5,182,943 - -0.5 5,182,943 - +0.7 5,182,943 - -1.7 5,182,956 + -0.2 5,182,978 + -0.0 5,182,978 + -0.5 5,182,979 - +1.8 5,182,994 - +0.2 5,182,994 - +1.0 5,182,999 + +0.6 5,182,999 + +0.8 5,183,000 - -0.0 5,183,113 + Psyr_4331 0.13 -0.6 5,183,720 + Psyr_4331 0.79 -1.0 5,183,918 + +0.3 5,183,918 + +0.3 5,183,918 + -1.0 5,183,918 + +1.0 5,183,918 + -1.3 5,183,918 + -0.6 5,183,918 + -1.4 5,183,918 + -1.3 5,183,918 + +0.7 5,183,918 + +2.1 5,183,918 + +1.2 5,183,918 + -0.5 5,183,918 + -0.7 5,183,918 + -1.1 5,183,918 + +0.2 5,183,918 + +0.6 5,183,918 + -0.8 5,183,918 + +0.6 5,183,918 + -0.6 5,183,918 + +1.0 5,183,918 + -1.5 5,183,919 - -0.1 5,183,919 - +0.0 5,183,919 - +0.6 5,183,919 - -0.1 5,183,919 - +0.8 5,183,919 - +2.7 5,183,919 - -0.3 5,183,919 - -0.7 5,183,919 - +1.4 5,183,919 - -1.2 5,183,919 - +0.3 5,183,919 - -0.4 5,183,919 - +1.2 5,183,919 - -1.6 5,183,919 - +0.4 5,183,919 - +0.5 5,183,919 - -0.4 5,183,919 - -0.1 5,183,919 - -0.3 5,183,919 - +0.9 5,183,919 - +0.4 5,183,919 - +2.6 5,183,919 - +0.6 5,183,939 + +0.7 5,183,939 + +1.1 5,183,939 + +0.5 5,183,939 + +0.2 5,183,939 + +2.1 5,183,959 - -0.3 5,183,983 + +1.3 5,184,098 + +1.4 5,184,099 - +0.8 5,184,133 + -1.7 5,184,134 - +0.6 5,184,140 - -0.5 5,184,161 + -0.2 5,184,161 + -0.5 5,184,161 + +1.0 5,184,161 + +0.3 5,184,161 + +0.3 5,184,161 + +2.0 5,184,161 + +1.6 5,184,161 + +1.1 5,184,162 - +0.8 5,184,162 - -0.1 5,184,162 - -0.5 5,184,162 - -0.2 5,184,162 - +0.2 5,184,162 - -0.5 5,184,162 - -0.3 5,184,162 - -1.3 5,184,162 - -0.3 5,184,162 - -0.1 5,184,162 - +0.4 5,184,162 - +3.0 5,184,162 - -0.8 5,184,162 - -0.6 5,184,162 - +3.6 5,184,162 - +0.2 5,184,162 - -0.4 5,184,162 - -0.4 5,184,162 - -0.2 5,184,162 - +1.7 5,184,163 + +1.5 5,184,163 + +1.8 5,184,163 + -0.0 5,184,163 + +1.4 5,184,163 + +0.2 5,184,163 + -0.8 5,184,163 + -0.4 5,184,163 + -2.6 5,184,163 + +0.5 5,184,163 + -0.2 5,184,163 + +0.1 5,184,163 + -0.6 5,184,163 + +1.3 5,184,163 + -0.1 5,184,163 + -2.0 5,184,164 - -0.6 5,184,164 - -1.3 5,184,164 - -0.4 5,184,164 - -0.3 5,184,164 - -2.6 5,184,164 - -2.0 5,184,164 - +0.2 5,184,164 - +0.2 5,184,164 - +1.7 5,184,164 - -0.4 5,184,164 - -0.7 5,184,164 - +0.7 5,184,274 + Psyr_4332 0.19 -0.0 5,184,274 + Psyr_4332 0.19 +1.0 5,184,352 + Psyr_4332 0.38 +0.5 5,184,352 + Psyr_4332 0.38 -1.2 5,184,352 + Psyr_4332 0.38 -0.9 5,184,352 + Psyr_4332 0.38 -0.3 5,184,352 + Psyr_4332 0.38 -1.0 5,184,352 + Psyr_4332 0.38 -0.9 5,184,352 + Psyr_4332 0.38 +1.2 5,184,352 + Psyr_4332 0.38 -0.0 5,184,352 + Psyr_4332 0.38 -0.2 5,184,352 + Psyr_4332 0.38 -0.6 5,184,352 + Psyr_4332 0.38 -1.2 5,184,352 + Psyr_4332 0.38 -0.0 5,184,352 + Psyr_4332 0.38 -0.0 5,184,352 + Psyr_4332 0.38 +1.0 5,184,352 + Psyr_4332 0.38 -1.1 5,184,353 - Psyr_4332 0.38 -0.8 5,184,353 - Psyr_4332 0.38 -1.0 5,184,353 - Psyr_4332 0.38 -2.4 5,184,353 - Psyr_4332 0.38 +0.6 5,184,353 - Psyr_4332 0.38 +1.1 5,184,353 - Psyr_4332 0.38 -0.0 5,184,353 - Psyr_4332 0.38 -0.3 5,184,353 - Psyr_4332 0.38 +0.4 5,184,353 - Psyr_4332 0.38 -1.1 5,184,353 - Psyr_4332 0.38 +0.3 5,184,353 - Psyr_4332 0.38 +0.7 5,184,353 - Psyr_4332 0.38 +1.1 5,184,353 - Psyr_4332 0.38 -0.4 5,184,355 - Psyr_4332 0.39 -1.4 5,184,406 + Psyr_4332 0.51 -0.3 5,184,406 + Psyr_4332 0.51 -1.0 5,184,406 + Psyr_4332 0.51 +1.5 5,184,407 - Psyr_4332 0.51 +3.0 5,184,407 - Psyr_4332 0.51 -0.2 5,184,407 - Psyr_4332 0.51 +1.0 5,184,561 + Psyr_4332 0.88 -0.9 5,184,561 + Psyr_4332 0.88 -0.1 5,184,562 - Psyr_4332 0.88 +1.7 5,184,828 - Psyr_4333 0.21 -0.2 5,184,828 - Psyr_4333 0.21 -0.5 5,184,860 + Psyr_4333 0.25 +0.2
Or see this region's nucleotide sequence