Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4174 and Psyr_4175 are separated by 148 nucleotides Psyr_4175 and Psyr_4176 are separated by 288 nucleotides Psyr_4176 and Psyr_4177 are separated by 175 nucleotides Psyr_4177 and Psyr_4178 are separated by 160 nucleotides
Psyr_4174: Psyr_4174 - conserved hypothetical protein, at 4,966,229 to 4,966,567
_4174
Psyr_4175: Psyr_4175 - Transport-associated protein, at 4,966,716 to 4,967,069
_4175
Psyr_4176: Psyr_4176 - Polyribonucleotide nucleotidyltransferase, at 4,967,358 to 4,969,463
_4176
Psyr_4177: Psyr_4177 - SSU ribosomal protein S15P, at 4,969,639 to 4,969,908
_4177
Psyr_4178: Psyr_4178 - tRNA pseudouridine synthase B, at 4,970,069 to 4,970,986
_4178
Position (kb) 4967
4968
4969
4970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4966.439 kb on - strand, within Psyr_4174 at 4966.446 kb on - strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.484 kb on + strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.485 kb on - strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.505 kb on + strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.506 kb on - strand, within Psyr_4174 at 4966.512 kb on - strand, within Psyr_4174 at 4966.512 kb on - strand, within Psyr_4174 at 4966.539 kb on + strand at 4966.607 kb on + strand at 4966.607 kb on + strand at 4966.608 kb on - strand at 4966.647 kb on + strand at 4966.648 kb on - strand at 4966.648 kb on - strand at 4966.658 kb on - strand at 4966.658 kb on - strand at 4966.658 kb on - strand at 4966.709 kb on + strand at 4966.751 kb on + strand at 4966.751 kb on + strand at 4966.752 kb on - strand, within Psyr_4175 at 4966.859 kb on + strand, within Psyr_4175 at 4966.859 kb on + strand, within Psyr_4175 at 4966.860 kb on - strand, within Psyr_4175 at 4966.860 kb on - strand, within Psyr_4175 at 4966.860 kb on - strand, within Psyr_4175 at 4966.931 kb on + strand, within Psyr_4175 at 4966.931 kb on + strand, within Psyr_4175 at 4966.931 kb on + strand, within Psyr_4175 at 4966.931 kb on + strand, within Psyr_4175 at 4966.931 kb on + strand, within Psyr_4175 at 4966.932 kb on - strand, within Psyr_4175 at 4966.932 kb on - strand, within Psyr_4175 at 4966.932 kb on - strand, within Psyr_4175 at 4966.932 kb on - strand, within Psyr_4175 at 4966.932 kb on - strand, within Psyr_4175 at 4966.932 kb on - strand, within Psyr_4175 at 4966.961 kb on + strand, within Psyr_4175 at 4966.961 kb on + strand, within Psyr_4175 at 4966.962 kb on - strand, within Psyr_4175 at 4966.977 kb on - strand, within Psyr_4175 at 4967.069 kb on + strand at 4967.070 kb on - strand at 4967.075 kb on - strand at 4967.188 kb on + strand at 4967.291 kb on - strand at 4967.298 kb on + strand at 4970.218 kb on - strand, within Psyr_4178 at 4970.401 kb on - strand, within Psyr_4178 at 4970.401 kb on - strand, within Psyr_4178 at 4970.401 kb on - strand, within Psyr_4178 at 4970.401 kb on - strand, within Psyr_4178 at 4970.401 kb on - strand, within Psyr_4178 at 4970.401 kb on - strand, within Psyr_4178 at 4970.401 kb on - strand, within Psyr_4178 at 4970.452 kb on - strand, within Psyr_4178 at 4970.452 kb on - strand, within Psyr_4178 at 4970.452 kb on - strand, within Psyr_4178
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 4,966,439 - Psyr_4174 0.62 -1.3 4,966,446 - Psyr_4174 0.64 +0.5 4,966,484 + Psyr_4174 0.75 -0.5 4,966,484 + Psyr_4174 0.75 +0.7 4,966,484 + Psyr_4174 0.75 +0.9 4,966,484 + Psyr_4174 0.75 -2.2 4,966,484 + Psyr_4174 0.75 -0.6 4,966,484 + Psyr_4174 0.75 -0.3 4,966,484 + Psyr_4174 0.75 +0.3 4,966,484 + Psyr_4174 0.75 +0.7 4,966,484 + Psyr_4174 0.75 +0.8 4,966,484 + Psyr_4174 0.75 +2.0 4,966,484 + Psyr_4174 0.75 +1.9 4,966,484 + Psyr_4174 0.75 -0.2 4,966,484 + Psyr_4174 0.75 +0.1 4,966,484 + Psyr_4174 0.75 +1.1 4,966,484 + Psyr_4174 0.75 +1.0 4,966,484 + Psyr_4174 0.75 +0.2 4,966,485 - Psyr_4174 0.76 +0.4 4,966,485 - Psyr_4174 0.76 +0.2 4,966,485 - Psyr_4174 0.76 -0.7 4,966,485 - Psyr_4174 0.76 +0.1 4,966,485 - Psyr_4174 0.76 -0.4 4,966,485 - Psyr_4174 0.76 -0.6 4,966,485 - Psyr_4174 0.76 -1.0 4,966,485 - Psyr_4174 0.76 -0.5 4,966,485 - Psyr_4174 0.76 -1.6 4,966,505 + Psyr_4174 0.81 +0.4 4,966,505 + Psyr_4174 0.81 -0.3 4,966,505 + Psyr_4174 0.81 +0.6 4,966,505 + Psyr_4174 0.81 -0.7 4,966,505 + Psyr_4174 0.81 +0.8 4,966,505 + Psyr_4174 0.81 -0.1 4,966,505 + Psyr_4174 0.81 +0.5 4,966,505 + Psyr_4174 0.81 +0.9 4,966,505 + Psyr_4174 0.81 -0.2 4,966,505 + Psyr_4174 0.81 +1.9 4,966,505 + Psyr_4174 0.81 +0.1 4,966,505 + Psyr_4174 0.81 -1.0 4,966,505 + Psyr_4174 0.81 +0.1 4,966,505 + Psyr_4174 0.81 -0.2 4,966,506 - Psyr_4174 0.82 +0.5 4,966,506 - Psyr_4174 0.82 -0.2 4,966,506 - Psyr_4174 0.82 +0.5 4,966,506 - Psyr_4174 0.82 +0.5 4,966,506 - Psyr_4174 0.82 +0.0 4,966,506 - Psyr_4174 0.82 -0.1 4,966,506 - Psyr_4174 0.82 -0.1 4,966,506 - Psyr_4174 0.82 +0.1 4,966,506 - Psyr_4174 0.82 +1.1 4,966,506 - Psyr_4174 0.82 +0.3 4,966,506 - Psyr_4174 0.82 -0.7 4,966,506 - Psyr_4174 0.82 +1.3 4,966,506 - Psyr_4174 0.82 +0.0 4,966,506 - Psyr_4174 0.82 +0.3 4,966,506 - Psyr_4174 0.82 +0.6 4,966,506 - Psyr_4174 0.82 +0.8 4,966,512 - Psyr_4174 0.83 +1.4 4,966,512 - Psyr_4174 0.83 +0.6 4,966,539 + +0.1 4,966,607 + -3.2 4,966,607 + +0.5 4,966,608 - +1.1 4,966,647 + +1.3 4,966,648 - +1.3 4,966,648 - -0.0 4,966,658 - -0.3 4,966,658 - -0.4 4,966,658 - +0.9 4,966,709 + +0.7 4,966,751 + +0.2 4,966,751 + -0.7 4,966,752 - Psyr_4175 0.10 +0.8 4,966,859 + Psyr_4175 0.40 +1.4 4,966,859 + Psyr_4175 0.40 -0.5 4,966,860 - Psyr_4175 0.41 +1.3 4,966,860 - Psyr_4175 0.41 +0.5 4,966,860 - Psyr_4175 0.41 -1.9 4,966,931 + Psyr_4175 0.61 +0.4 4,966,931 + Psyr_4175 0.61 +2.5 4,966,931 + Psyr_4175 0.61 -1.7 4,966,931 + Psyr_4175 0.61 -0.8 4,966,931 + Psyr_4175 0.61 +0.9 4,966,932 - Psyr_4175 0.61 -0.8 4,966,932 - Psyr_4175 0.61 +1.8 4,966,932 - Psyr_4175 0.61 +1.9 4,966,932 - Psyr_4175 0.61 +0.9 4,966,932 - Psyr_4175 0.61 +1.9 4,966,932 - Psyr_4175 0.61 -0.1 4,966,961 + Psyr_4175 0.69 -0.2 4,966,961 + Psyr_4175 0.69 +0.2 4,966,962 - Psyr_4175 0.69 +0.5 4,966,977 - Psyr_4175 0.74 +0.6 4,967,069 + -0.1 4,967,070 - +0.9 4,967,075 - -0.6 4,967,188 + +0.5 4,967,291 - +1.6 4,967,298 + +0.1 4,970,218 - Psyr_4178 0.16 +2.6 4,970,401 - Psyr_4178 0.36 +3.0 4,970,401 - Psyr_4178 0.36 +2.9 4,970,401 - Psyr_4178 0.36 +4.0 4,970,401 - Psyr_4178 0.36 +1.6 4,970,401 - Psyr_4178 0.36 +2.6 4,970,401 - Psyr_4178 0.36 +1.8 4,970,401 - Psyr_4178 0.36 +2.7 4,970,452 - Psyr_4178 0.42 +1.8 4,970,452 - Psyr_4178 0.42 +2.9 4,970,452 - Psyr_4178 0.42 +2.2
Or see this region's nucleotide sequence