Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4168

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4166 and Psyr_4167 are separated by 309 nucleotidesPsyr_4167 and Psyr_4168 are separated by 78 nucleotidesPsyr_4168 and Psyr_4169 are separated by 32 nucleotidesPsyr_4169 and Psyr_4170 overlap by 4 nucleotides Psyr_4166: Psyr_4166 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 4,955,603 to 4,957,048 _4166 Psyr_4167: Psyr_4167 - Rare lipoprotein A, at 4,957,358 to 4,957,795 _4167 Psyr_4168: Psyr_4168 - K+-dependent Na+/Ca+ exchanger related-protein, at 4,957,874 to 4,958,905 _4168 Psyr_4169: Psyr_4169 - 4-carboxymuconolactone decarboxylase, at 4,958,938 to 4,959,321 _4169 Psyr_4170: Psyr_4170 - Auxin Efflux Carrier, at 4,959,318 to 4,960,268 _4170 Position (kb) 4957 4958 4959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4957.088 kb on - strandat 4957.088 kb on - strandat 4957.089 kb on + strandat 4957.089 kb on + strandat 4957.089 kb on + strandat 4957.089 kb on + strandat 4957.089 kb on + strandat 4957.089 kb on + strandat 4957.090 kb on - strandat 4957.090 kb on - strandat 4957.090 kb on - strandat 4957.090 kb on - strandat 4957.142 kb on - strandat 4957.257 kb on + strandat 4957.257 kb on + strandat 4957.257 kb on + strandat 4957.257 kb on + strandat 4957.258 kb on - strandat 4957.258 kb on - strandat 4957.258 kb on - strandat 4957.258 kb on - strandat 4957.258 kb on - strandat 4957.259 kb on + strandat 4957.401 kb on + strandat 4957.401 kb on + strandat 4957.401 kb on + strandat 4957.402 kb on - strand, within Psyr_4167at 4957.402 kb on - strand, within Psyr_4167at 4957.439 kb on - strand, within Psyr_4167at 4957.465 kb on - strand, within Psyr_4167at 4957.505 kb on + strand, within Psyr_4167at 4957.529 kb on + strand, within Psyr_4167at 4957.530 kb on - strand, within Psyr_4167at 4957.532 kb on + strand, within Psyr_4167at 4957.831 kb on + strandat 4957.831 kb on + strandat 4957.832 kb on - strandat 4957.890 kb on + strandat 4957.890 kb on + strandat 4957.891 kb on - strandat 4957.891 kb on - strandat 4958.019 kb on + strand, within Psyr_4168at 4958.020 kb on - strand, within Psyr_4168at 4958.020 kb on - strand, within Psyr_4168at 4958.094 kb on + strand, within Psyr_4168at 4958.094 kb on + strand, within Psyr_4168at 4958.095 kb on - strand, within Psyr_4168at 4958.095 kb on - strand, within Psyr_4168at 4958.095 kb on - strand, within Psyr_4168at 4958.095 kb on - strand, within Psyr_4168at 4958.095 kb on - strand, within Psyr_4168at 4958.095 kb on - strand, within Psyr_4168at 4958.095 kb on - strand, within Psyr_4168at 4958.341 kb on + strand, within Psyr_4168at 4958.353 kb on + strand, within Psyr_4168at 4958.467 kb on + strand, within Psyr_4168at 4958.705 kb on + strand, within Psyr_4168at 4958.706 kb on - strand, within Psyr_4168at 4958.706 kb on - strand, within Psyr_4168at 4958.757 kb on - strand, within Psyr_4168at 4958.766 kb on - strand, within Psyr_4168at 4958.766 kb on - strand, within Psyr_4168at 4958.766 kb on - strand, within Psyr_4168at 4958.844 kb on + strandat 4958.922 kb on + strandat 4958.923 kb on - strandat 4958.923 kb on - strandat 4958.998 kb on + strand, within Psyr_4169at 4958.998 kb on + strand, within Psyr_4169at 4958.998 kb on + strand, within Psyr_4169at 4958.999 kb on - strand, within Psyr_4169at 4958.999 kb on - strand, within Psyr_4169at 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.304 kb on + strandat 4959.305 kb on - strandat 4959.305 kb on - strandat 4959.319 kb on + strandat 4959.319 kb on + strandat 4959.319 kb on + strandat 4959.319 kb on + strandat 4959.319 kb on + strandat 4959.320 kb on - strandat 4959.320 kb on - strandat 4959.320 kb on - strandat 4959.320 kb on - strandat 4959.415 kb on + strand, within Psyr_4170at 4959.416 kb on - strand, within Psyr_4170at 4959.416 kb on - strand, within Psyr_4170at 4959.416 kb on - strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.445 kb on + strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.446 kb on - strand, within Psyr_4170at 4959.476 kb on - strand, within Psyr_4170at 4959.476 kb on - strand, within Psyr_4170at 4959.476 kb on - strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.667 kb on + strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.668 kb on - strand, within Psyr_4170at 4959.712 kb on + strand, within Psyr_4170at 4959.712 kb on + strand, within Psyr_4170at 4959.712 kb on + strand, within Psyr_4170at 4959.712 kb on + strand, within Psyr_4170at 4959.713 kb on - strand, within Psyr_4170at 4959.808 kb on + strand, within Psyr_4170at 4959.819 kb on + strand, within Psyr_4170at 4959.820 kb on - strand, within Psyr_4170at 4959.841 kb on + strand, within Psyr_4170at 4959.841 kb on + strand, within Psyr_4170at 4959.842 kb on - strand, within Psyr_4170at 4959.842 kb on - strand, within Psyr_4170at 4959.842 kb on - strand, within Psyr_4170at 4959.842 kb on - strand, within Psyr_4170at 4959.898 kb on + strand, within Psyr_4170at 4959.899 kb on - strand, within Psyr_4170at 4959.899 kb on - strand, within Psyr_4170

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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4,957,088 - +0.3
4,957,088 - +0.1
4,957,089 + +0.4
4,957,089 + -0.1
4,957,089 + +0.6
4,957,089 + -1.0
4,957,089 + +0.5
4,957,089 + +0.6
4,957,090 - +1.1
4,957,090 - +1.9
4,957,090 - +0.2
4,957,090 - -0.7
4,957,142 - -0.1
4,957,257 + -0.9
4,957,257 + -0.2
4,957,257 + +3.6
4,957,257 + -0.5
4,957,258 - +0.0
4,957,258 - -0.0
4,957,258 - -2.1
4,957,258 - +0.5
4,957,258 - +0.7
4,957,259 + +0.7
4,957,401 + -0.2
4,957,401 + -1.9
4,957,401 + +0.4
4,957,402 - Psyr_4167 0.10 -0.1
4,957,402 - Psyr_4167 0.10 -0.5
4,957,439 - Psyr_4167 0.18 +0.8
4,957,465 - Psyr_4167 0.24 -1.2
4,957,505 + Psyr_4167 0.34 -0.5
4,957,529 + Psyr_4167 0.39 -1.9
4,957,530 - Psyr_4167 0.39 -0.8
4,957,532 + Psyr_4167 0.40 +0.5
4,957,831 + -0.3
4,957,831 + +1.9
4,957,832 - +0.7
4,957,890 + +1.1
4,957,890 + +0.8
4,957,891 - +1.0
4,957,891 - +0.3
4,958,019 + Psyr_4168 0.14 +1.8
4,958,020 - Psyr_4168 0.14 -1.6
4,958,020 - Psyr_4168 0.14 +0.3
4,958,094 + Psyr_4168 0.21 -0.0
4,958,094 + Psyr_4168 0.21 +0.1
4,958,095 - Psyr_4168 0.21 +0.5
4,958,095 - Psyr_4168 0.21 +0.9
4,958,095 - Psyr_4168 0.21 -0.1
4,958,095 - Psyr_4168 0.21 +1.8
4,958,095 - Psyr_4168 0.21 +0.5
4,958,095 - Psyr_4168 0.21 +0.6
4,958,095 - Psyr_4168 0.21 +0.8
4,958,341 + Psyr_4168 0.45 -0.0
4,958,353 + Psyr_4168 0.46 +1.3
4,958,467 + Psyr_4168 0.57 +3.5
4,958,705 + Psyr_4168 0.81 +2.5
4,958,706 - Psyr_4168 0.81 -2.5
4,958,706 - Psyr_4168 0.81 +2.7
4,958,757 - Psyr_4168 0.86 -0.0
4,958,766 - Psyr_4168 0.86 -0.2
4,958,766 - Psyr_4168 0.86 +0.3
4,958,766 - Psyr_4168 0.86 +0.5
4,958,844 + -0.3
4,958,922 + +1.3
4,958,923 - -0.3
4,958,923 - +0.3
4,958,998 + Psyr_4169 0.16 +0.1
4,958,998 + Psyr_4169 0.16 -0.7
4,958,998 + Psyr_4169 0.16 +2.5
4,958,999 - Psyr_4169 0.16 -0.5
4,958,999 - Psyr_4169 0.16 +0.6
4,959,304 + +0.5
4,959,304 + -0.5
4,959,304 + +0.8
4,959,304 + -0.3
4,959,304 + +0.1
4,959,304 + +0.3
4,959,304 + -1.2
4,959,305 - -0.2
4,959,305 - +0.5
4,959,319 + -0.4
4,959,319 + -0.1
4,959,319 + +0.2
4,959,319 + +0.6
4,959,319 + -0.4
4,959,320 - -0.8
4,959,320 - -0.3
4,959,320 - -0.6
4,959,320 - +1.7
4,959,415 + Psyr_4170 0.10 +0.5
4,959,416 - Psyr_4170 0.10 +0.6
4,959,416 - Psyr_4170 0.10 -0.3
4,959,416 - Psyr_4170 0.10 +0.2
4,959,445 + Psyr_4170 0.13 +0.3
4,959,445 + Psyr_4170 0.13 -0.6
4,959,445 + Psyr_4170 0.13 -0.8
4,959,445 + Psyr_4170 0.13 -0.9
4,959,445 + Psyr_4170 0.13 +0.0
4,959,445 + Psyr_4170 0.13 +1.1
4,959,445 + Psyr_4170 0.13 +1.8
4,959,445 + Psyr_4170 0.13 -0.2
4,959,445 + Psyr_4170 0.13 +0.9
4,959,446 - Psyr_4170 0.13 +0.3
4,959,446 - Psyr_4170 0.13 +1.1
4,959,446 - Psyr_4170 0.13 -0.7
4,959,446 - Psyr_4170 0.13 +0.2
4,959,446 - Psyr_4170 0.13 -1.4
4,959,446 - Psyr_4170 0.13 +0.1
4,959,446 - Psyr_4170 0.13 -1.1
4,959,476 - Psyr_4170 0.17 +0.0
4,959,476 - Psyr_4170 0.17 -1.0
4,959,476 - Psyr_4170 0.17 +0.8
4,959,667 + Psyr_4170 0.37 +0.9
4,959,667 + Psyr_4170 0.37 +1.8
4,959,667 + Psyr_4170 0.37 -0.1
4,959,667 + Psyr_4170 0.37 +0.6
4,959,667 + Psyr_4170 0.37 -0.0
4,959,667 + Psyr_4170 0.37 +0.3
4,959,667 + Psyr_4170 0.37 +1.4
4,959,667 + Psyr_4170 0.37 +0.2
4,959,668 - Psyr_4170 0.37 +0.2
4,959,668 - Psyr_4170 0.37 +2.4
4,959,668 - Psyr_4170 0.37 -3.2
4,959,668 - Psyr_4170 0.37 +0.6
4,959,668 - Psyr_4170 0.37 +0.5
4,959,668 - Psyr_4170 0.37 -2.2
4,959,712 + Psyr_4170 0.41 +0.4
4,959,712 + Psyr_4170 0.41 +0.3
4,959,712 + Psyr_4170 0.41 -1.7
4,959,712 + Psyr_4170 0.41 +0.4
4,959,713 - Psyr_4170 0.42 -0.4
4,959,808 + Psyr_4170 0.52 +1.7
4,959,819 + Psyr_4170 0.53 -0.2
4,959,820 - Psyr_4170 0.53 -0.8
4,959,841 + Psyr_4170 0.55 +1.5
4,959,841 + Psyr_4170 0.55 +1.1
4,959,842 - Psyr_4170 0.55 -0.0
4,959,842 - Psyr_4170 0.55 +0.1
4,959,842 - Psyr_4170 0.55 -0.5
4,959,842 - Psyr_4170 0.55 -0.4
4,959,898 + Psyr_4170 0.61 +0.2
4,959,899 - Psyr_4170 0.61 -0.9
4,959,899 - Psyr_4170 0.61 +0.9

Or see this region's nucleotide sequence