Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4134

Experiment: KB with Avocatin B 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4133 and Psyr_4134 are separated by 123 nucleotidesPsyr_4134 and Psyr_4135 are separated by 153 nucleotides Psyr_4133: Psyr_4133 - histidinol dehydrogenase, at 4,923,796 to 4,925,142 _4133 Psyr_4134: Psyr_4134 - ATP phosphoribosyltransferase (homohexameric), at 4,925,266 to 4,925,901 _4134 Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320 _4135 Position (kb) 4925 4926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.482 kb on + strand, within Psyr_4133at 4924.483 kb on - strand, within Psyr_4133at 4924.532 kb on + strand, within Psyr_4133at 4924.736 kb on + strand, within Psyr_4133at 4924.736 kb on + strand, within Psyr_4133at 4924.737 kb on - strand, within Psyr_4133at 4924.799 kb on + strand, within Psyr_4133at 4924.800 kb on - strand, within Psyr_4133at 4924.832 kb on + strand, within Psyr_4133at 4925.179 kb on + strandat 4925.222 kb on + strandat 4925.233 kb on + strandat 4925.492 kb on + strand, within Psyr_4134at 4925.492 kb on + strand, within Psyr_4134at 4925.492 kb on + strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.531 kb on + strand, within Psyr_4134at 4925.531 kb on + strand, within Psyr_4134at 4925.534 kb on + strand, within Psyr_4134at 4925.566 kb on + strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.655 kb on - strand, within Psyr_4134at 4925.655 kb on - strand, within Psyr_4134at 4925.655 kb on - strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.673 kb on - strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4926.057 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
remove
4,924,478 + Psyr_4133 0.51 +1.9
4,924,478 + Psyr_4133 0.51 +0.6
4,924,478 + Psyr_4133 0.51 -1.2
4,924,478 + Psyr_4133 0.51 -1.7
4,924,478 + Psyr_4133 0.51 -1.4
4,924,478 + Psyr_4133 0.51 -0.1
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 +0.9
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 -1.5
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 -2.9
4,924,478 + Psyr_4133 0.51 -0.1
4,924,478 + Psyr_4133 0.51 -1.0
4,924,478 + Psyr_4133 0.51 -0.3
4,924,478 + Psyr_4133 0.51 -0.9
4,924,479 - Psyr_4133 0.51 +0.5
4,924,479 - Psyr_4133 0.51 -0.9
4,924,479 - Psyr_4133 0.51 +0.3
4,924,479 - Psyr_4133 0.51 -0.8
4,924,479 - Psyr_4133 0.51 +1.5
4,924,479 - Psyr_4133 0.51 -2.7
4,924,479 - Psyr_4133 0.51 -1.3
4,924,479 - Psyr_4133 0.51 -0.7
4,924,479 - Psyr_4133 0.51 +0.3
4,924,479 - Psyr_4133 0.51 -2.0
4,924,479 - Psyr_4133 0.51 -0.8
4,924,479 - Psyr_4133 0.51 +0.9
4,924,479 - Psyr_4133 0.51 -0.8
4,924,479 - Psyr_4133 0.51 -1.7
4,924,479 - Psyr_4133 0.51 -0.7
4,924,479 - Psyr_4133 0.51 -1.0
4,924,479 - Psyr_4133 0.51 -1.5
4,924,482 + Psyr_4133 0.51 +0.9
4,924,483 - Psyr_4133 0.51 +0.9
4,924,532 + Psyr_4133 0.55 +0.1
4,924,736 + Psyr_4133 0.70 -1.1
4,924,736 + Psyr_4133 0.70 +0.3
4,924,737 - Psyr_4133 0.70 -1.7
4,924,799 + Psyr_4133 0.74 -1.1
4,924,800 - Psyr_4133 0.75 -1.5
4,924,832 + Psyr_4133 0.77 -0.2
4,925,179 + -1.4
4,925,222 + -1.1
4,925,233 + -2.2
4,925,492 + Psyr_4134 0.36 -1.1
4,925,492 + Psyr_4134 0.36 -0.9
4,925,492 + Psyr_4134 0.36 +0.1
4,925,493 - Psyr_4134 0.36 -0.7
4,925,493 - Psyr_4134 0.36 -1.9
4,925,493 - Psyr_4134 0.36 -0.7
4,925,493 - Psyr_4134 0.36 +0.6
4,925,493 - Psyr_4134 0.36 -0.3
4,925,493 - Psyr_4134 0.36 -2.3
4,925,493 - Psyr_4134 0.36 +0.9
4,925,493 - Psyr_4134 0.36 -0.9
4,925,531 + Psyr_4134 0.42 -2.3
4,925,531 + Psyr_4134 0.42 -1.8
4,925,534 + Psyr_4134 0.42 -1.4
4,925,566 + Psyr_4134 0.47 -1.4
4,925,654 + Psyr_4134 0.61 +0.6
4,925,654 + Psyr_4134 0.61 -1.4
4,925,655 - Psyr_4134 0.61 -0.4
4,925,655 - Psyr_4134 0.61 -0.5
4,925,655 - Psyr_4134 0.61 -0.4
4,925,672 + Psyr_4134 0.64 -1.3
4,925,672 + Psyr_4134 0.64 +2.2
4,925,672 + Psyr_4134 0.64 +1.7
4,925,672 + Psyr_4134 0.64 -1.9
4,925,672 + Psyr_4134 0.64 -1.0
4,925,673 - Psyr_4134 0.64 +0.5
4,925,729 + Psyr_4134 0.73 -0.4
4,925,729 + Psyr_4134 0.73 +0.2
4,925,729 + Psyr_4134 0.73 -0.2
4,925,729 + Psyr_4134 0.73 +0.3
4,925,729 + Psyr_4134 0.73 -0.4
4,925,729 + Psyr_4134 0.73 +0.9
4,925,729 + Psyr_4134 0.73 -1.5
4,925,729 + Psyr_4134 0.73 -0.7
4,925,730 - Psyr_4134 0.73 +1.3
4,925,730 - Psyr_4134 0.73 -1.2
4,925,730 - Psyr_4134 0.73 +0.0
4,925,910 + -0.1
4,925,910 + -0.1
4,925,910 + -0.3
4,925,910 + +0.9
4,925,910 + -1.9
4,925,911 - -0.4
4,925,911 - -0.9
4,925,911 - -0.0
4,925,911 - +0.3
4,925,911 - -0.5
4,926,057 - +1.6

Or see this region's nucleotide sequence