Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4133

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4132 and Psyr_4133 overlap by 1 nucleotidesPsyr_4133 and Psyr_4134 are separated by 123 nucleotidesPsyr_4134 and Psyr_4135 are separated by 153 nucleotides Psyr_4132: Psyr_4132 - histidinol phosphate aminotransferase apoenzyme, at 4,922,744 to 4,923,796 _4132 Psyr_4133: Psyr_4133 - histidinol dehydrogenase, at 4,923,796 to 4,925,142 _4133 Psyr_4134: Psyr_4134 - ATP phosphoribosyltransferase (homohexameric), at 4,925,266 to 4,925,901 _4134 Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320 _4135 Position (kb) 4923 4924 4925 4926Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4923.059 kb on - strand, within Psyr_4132at 4923.218 kb on - strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.246 kb on + strand, within Psyr_4132at 4923.247 kb on - strand, within Psyr_4132at 4923.247 kb on - strand, within Psyr_4132at 4923.247 kb on - strand, within Psyr_4132at 4923.247 kb on - strand, within Psyr_4132at 4923.423 kb on + strand, within Psyr_4132at 4923.436 kb on - strand, within Psyr_4132at 4923.447 kb on + strand, within Psyr_4132at 4923.447 kb on + strand, within Psyr_4132at 4923.448 kb on - strand, within Psyr_4132at 4923.465 kb on + strand, within Psyr_4132at 4923.465 kb on + strand, within Psyr_4132at 4923.466 kb on - strand, within Psyr_4132at 4923.466 kb on - strand, within Psyr_4132at 4923.558 kb on - strand, within Psyr_4132at 4923.579 kb on + strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.580 kb on - strand, within Psyr_4132at 4923.583 kb on - strand, within Psyr_4132at 4923.753 kb on + strandat 4923.753 kb on + strandat 4923.753 kb on + strandat 4923.753 kb on + strandat 4923.753 kb on + strandat 4923.754 kb on - strandat 4923.754 kb on - strandat 4923.754 kb on - strandat 4923.754 kb on - strandat 4923.754 kb on - strandat 4923.754 kb on - strandat 4923.754 kb on - strandat 4923.797 kb on + strandat 4923.797 kb on + strandat 4923.797 kb on + strandat 4923.797 kb on + strandat 4923.798 kb on - strandat 4923.798 kb on - strandat 4923.798 kb on - strandat 4923.798 kb on - strandat 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.941 kb on + strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4923.942 kb on - strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.478 kb on + strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.479 kb on - strand, within Psyr_4133at 4924.482 kb on + strand, within Psyr_4133at 4924.483 kb on - strand, within Psyr_4133at 4924.532 kb on + strand, within Psyr_4133at 4924.736 kb on + strand, within Psyr_4133at 4924.736 kb on + strand, within Psyr_4133at 4924.737 kb on - strand, within Psyr_4133at 4924.799 kb on + strand, within Psyr_4133at 4924.800 kb on - strand, within Psyr_4133at 4924.832 kb on + strand, within Psyr_4133at 4925.179 kb on + strandat 4925.222 kb on + strandat 4925.233 kb on + strandat 4925.492 kb on + strand, within Psyr_4134at 4925.492 kb on + strand, within Psyr_4134at 4925.492 kb on + strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.493 kb on - strand, within Psyr_4134at 4925.531 kb on + strand, within Psyr_4134at 4925.531 kb on + strand, within Psyr_4134at 4925.534 kb on + strand, within Psyr_4134at 4925.566 kb on + strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.654 kb on + strand, within Psyr_4134at 4925.655 kb on - strand, within Psyr_4134at 4925.655 kb on - strand, within Psyr_4134at 4925.655 kb on - strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.672 kb on + strand, within Psyr_4134at 4925.673 kb on - strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.729 kb on + strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.730 kb on - strand, within Psyr_4134at 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.910 kb on + strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4925.911 kb on - strandat 4926.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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4,923,059 - Psyr_4132 0.30 +1.2
4,923,218 - Psyr_4132 0.45 -0.9
4,923,246 + Psyr_4132 0.48 -0.7
4,923,246 + Psyr_4132 0.48 +0.1
4,923,246 + Psyr_4132 0.48 -4.0
4,923,246 + Psyr_4132 0.48 +0.2
4,923,246 + Psyr_4132 0.48 -0.3
4,923,246 + Psyr_4132 0.48 -1.1
4,923,246 + Psyr_4132 0.48 -0.5
4,923,246 + Psyr_4132 0.48 -0.9
4,923,246 + Psyr_4132 0.48 -0.1
4,923,246 + Psyr_4132 0.48 +0.1
4,923,246 + Psyr_4132 0.48 -0.9
4,923,246 + Psyr_4132 0.48 -1.1
4,923,246 + Psyr_4132 0.48 +0.2
4,923,246 + Psyr_4132 0.48 -0.1
4,923,246 + Psyr_4132 0.48 -1.1
4,923,247 - Psyr_4132 0.48 -0.0
4,923,247 - Psyr_4132 0.48 -0.9
4,923,247 - Psyr_4132 0.48 -1.0
4,923,247 - Psyr_4132 0.48 -0.6
4,923,423 + Psyr_4132 0.64 +1.5
4,923,436 - Psyr_4132 0.66 -0.6
4,923,447 + Psyr_4132 0.67 -0.1
4,923,447 + Psyr_4132 0.67 +0.9
4,923,448 - Psyr_4132 0.67 +0.5
4,923,465 + Psyr_4132 0.68 -0.6
4,923,465 + Psyr_4132 0.68 -0.4
4,923,466 - Psyr_4132 0.69 +2.1
4,923,466 - Psyr_4132 0.69 -0.1
4,923,558 - Psyr_4132 0.77 +0.3
4,923,579 + Psyr_4132 0.79 -1.2
4,923,580 - Psyr_4132 0.79 +0.3
4,923,580 - Psyr_4132 0.79 -0.1
4,923,580 - Psyr_4132 0.79 -0.7
4,923,580 - Psyr_4132 0.79 +1.5
4,923,580 - Psyr_4132 0.79 +1.5
4,923,580 - Psyr_4132 0.79 -2.0
4,923,580 - Psyr_4132 0.79 -0.8
4,923,580 - Psyr_4132 0.79 -0.9
4,923,580 - Psyr_4132 0.79 -1.4
4,923,583 - Psyr_4132 0.80 +0.9
4,923,753 + +0.2
4,923,753 + -1.8
4,923,753 + -1.5
4,923,753 + -1.0
4,923,753 + -0.3
4,923,754 - -1.3
4,923,754 - -2.0
4,923,754 - +1.5
4,923,754 - +0.7
4,923,754 - -0.9
4,923,754 - -1.4
4,923,754 - -0.7
4,923,797 + -0.7
4,923,797 + +1.3
4,923,797 + -1.9
4,923,797 + +1.9
4,923,798 - -0.7
4,923,798 - +0.9
4,923,798 - +1.2
4,923,798 - -2.4
4,923,941 + Psyr_4133 0.11 -1.7
4,923,941 + Psyr_4133 0.11 -0.8
4,923,941 + Psyr_4133 0.11 +1.9
4,923,941 + Psyr_4133 0.11 -0.7
4,923,941 + Psyr_4133 0.11 +1.9
4,923,941 + Psyr_4133 0.11 +3.2
4,923,941 + Psyr_4133 0.11 -0.7
4,923,941 + Psyr_4133 0.11 -1.9
4,923,941 + Psyr_4133 0.11 +0.6
4,923,942 - Psyr_4133 0.11 +1.9
4,923,942 - Psyr_4133 0.11 -0.1
4,923,942 - Psyr_4133 0.11 -3.0
4,923,942 - Psyr_4133 0.11 -0.7
4,923,942 - Psyr_4133 0.11 +2.5
4,923,942 - Psyr_4133 0.11 -1.1
4,923,942 - Psyr_4133 0.11 -0.9
4,923,942 - Psyr_4133 0.11 +0.1
4,923,942 - Psyr_4133 0.11 -0.5
4,924,478 + Psyr_4133 0.51 +1.9
4,924,478 + Psyr_4133 0.51 +0.6
4,924,478 + Psyr_4133 0.51 -1.2
4,924,478 + Psyr_4133 0.51 -1.7
4,924,478 + Psyr_4133 0.51 -1.4
4,924,478 + Psyr_4133 0.51 -0.1
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 +0.9
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 -1.5
4,924,478 + Psyr_4133 0.51 -0.7
4,924,478 + Psyr_4133 0.51 -2.9
4,924,478 + Psyr_4133 0.51 -0.1
4,924,478 + Psyr_4133 0.51 -1.0
4,924,478 + Psyr_4133 0.51 -0.3
4,924,478 + Psyr_4133 0.51 -0.9
4,924,479 - Psyr_4133 0.51 +0.5
4,924,479 - Psyr_4133 0.51 -0.9
4,924,479 - Psyr_4133 0.51 +0.3
4,924,479 - Psyr_4133 0.51 -0.8
4,924,479 - Psyr_4133 0.51 +1.5
4,924,479 - Psyr_4133 0.51 -2.7
4,924,479 - Psyr_4133 0.51 -1.3
4,924,479 - Psyr_4133 0.51 -0.7
4,924,479 - Psyr_4133 0.51 +0.3
4,924,479 - Psyr_4133 0.51 -2.0
4,924,479 - Psyr_4133 0.51 -0.8
4,924,479 - Psyr_4133 0.51 +0.9
4,924,479 - Psyr_4133 0.51 -0.8
4,924,479 - Psyr_4133 0.51 -1.7
4,924,479 - Psyr_4133 0.51 -0.7
4,924,479 - Psyr_4133 0.51 -1.0
4,924,479 - Psyr_4133 0.51 -1.5
4,924,482 + Psyr_4133 0.51 +0.9
4,924,483 - Psyr_4133 0.51 +0.9
4,924,532 + Psyr_4133 0.55 +0.1
4,924,736 + Psyr_4133 0.70 -1.1
4,924,736 + Psyr_4133 0.70 +0.3
4,924,737 - Psyr_4133 0.70 -1.7
4,924,799 + Psyr_4133 0.74 -1.1
4,924,800 - Psyr_4133 0.75 -1.5
4,924,832 + Psyr_4133 0.77 -0.2
4,925,179 + -1.4
4,925,222 + -1.1
4,925,233 + -2.2
4,925,492 + Psyr_4134 0.36 -1.1
4,925,492 + Psyr_4134 0.36 -0.9
4,925,492 + Psyr_4134 0.36 +0.1
4,925,493 - Psyr_4134 0.36 -0.7
4,925,493 - Psyr_4134 0.36 -1.9
4,925,493 - Psyr_4134 0.36 -0.7
4,925,493 - Psyr_4134 0.36 +0.6
4,925,493 - Psyr_4134 0.36 -0.3
4,925,493 - Psyr_4134 0.36 -2.3
4,925,493 - Psyr_4134 0.36 +0.9
4,925,493 - Psyr_4134 0.36 -0.9
4,925,531 + Psyr_4134 0.42 -2.3
4,925,531 + Psyr_4134 0.42 -1.8
4,925,534 + Psyr_4134 0.42 -1.4
4,925,566 + Psyr_4134 0.47 -1.4
4,925,654 + Psyr_4134 0.61 +0.6
4,925,654 + Psyr_4134 0.61 -1.4
4,925,655 - Psyr_4134 0.61 -0.4
4,925,655 - Psyr_4134 0.61 -0.5
4,925,655 - Psyr_4134 0.61 -0.4
4,925,672 + Psyr_4134 0.64 -1.3
4,925,672 + Psyr_4134 0.64 +2.2
4,925,672 + Psyr_4134 0.64 +1.7
4,925,672 + Psyr_4134 0.64 -1.9
4,925,672 + Psyr_4134 0.64 -1.0
4,925,673 - Psyr_4134 0.64 +0.5
4,925,729 + Psyr_4134 0.73 -0.4
4,925,729 + Psyr_4134 0.73 +0.2
4,925,729 + Psyr_4134 0.73 -0.2
4,925,729 + Psyr_4134 0.73 +0.3
4,925,729 + Psyr_4134 0.73 -0.4
4,925,729 + Psyr_4134 0.73 +0.9
4,925,729 + Psyr_4134 0.73 -1.5
4,925,729 + Psyr_4134 0.73 -0.7
4,925,730 - Psyr_4134 0.73 +1.3
4,925,730 - Psyr_4134 0.73 -1.2
4,925,730 - Psyr_4134 0.73 +0.0
4,925,910 + -0.1
4,925,910 + -0.1
4,925,910 + -0.3
4,925,910 + +0.9
4,925,910 + -1.9
4,925,911 - -0.4
4,925,911 - -0.9
4,925,911 - -0.0
4,925,911 - +0.3
4,925,911 - -0.5
4,926,057 - +1.6

Or see this region's nucleotide sequence