Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3988

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3987 and Psyr_3988 are separated by 151 nucleotidesPsyr_3988 and Psyr_3989 are separated by 296 nucleotides Psyr_3987: Psyr_3987 - Iron-containing alcohol dehydrogenase, at 4,744,868 to 4,746,016 _3987 Psyr_3988: Psyr_3988 - conserved hypothetical protein, at 4,746,168 to 4,747,388 _3988 Psyr_3989: Psyr_3989 - hypothetical protein, at 4,747,685 to 4,748,905 _3989 Position (kb) 4746 4747 4748Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4745.203 kb on - strand, within Psyr_3987at 4745.203 kb on - strand, within Psyr_3987at 4745.239 kb on - strand, within Psyr_3987at 4745.369 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.412 kb on + strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.413 kb on - strand, within Psyr_3987at 4745.543 kb on + strand, within Psyr_3987at 4745.543 kb on + strand, within Psyr_3987at 4745.609 kb on - strand, within Psyr_3987at 4745.661 kb on + strand, within Psyr_3987at 4745.661 kb on + strand, within Psyr_3987at 4745.671 kb on + strand, within Psyr_3987at 4745.701 kb on + strand, within Psyr_3987at 4745.826 kb on + strand, within Psyr_3987at 4745.826 kb on + strand, within Psyr_3987at 4745.826 kb on + strand, within Psyr_3987at 4745.826 kb on + strand, within Psyr_3987at 4745.827 kb on - strand, within Psyr_3987at 4745.827 kb on - strand, within Psyr_3987at 4745.827 kb on - strand, within Psyr_3987at 4746.080 kb on + strandat 4746.177 kb on - strandat 4746.226 kb on + strandat 4746.258 kb on + strandat 4746.259 kb on - strandat 4746.259 kb on - strandat 4746.320 kb on + strand, within Psyr_3988at 4746.320 kb on + strand, within Psyr_3988at 4746.321 kb on - strand, within Psyr_3988at 4746.321 kb on - strand, within Psyr_3988at 4746.434 kb on - strand, within Psyr_3988at 4746.539 kb on + strand, within Psyr_3988at 4746.539 kb on + strand, within Psyr_3988at 4746.539 kb on + strand, within Psyr_3988at 4746.540 kb on - strand, within Psyr_3988at 4746.551 kb on - strand, within Psyr_3988at 4746.563 kb on + strand, within Psyr_3988at 4746.614 kb on + strand, within Psyr_3988at 4746.615 kb on - strand, within Psyr_3988at 4746.615 kb on - strand, within Psyr_3988at 4746.748 kb on + strand, within Psyr_3988at 4746.748 kb on + strand, within Psyr_3988at 4746.749 kb on - strand, within Psyr_3988at 4746.749 kb on - strand, within Psyr_3988at 4746.772 kb on + strand, within Psyr_3988at 4746.773 kb on - strand, within Psyr_3988at 4746.869 kb on + strand, within Psyr_3988at 4746.870 kb on - strand, within Psyr_3988at 4746.964 kb on + strand, within Psyr_3988at 4747.184 kb on - strand, within Psyr_3988at 4747.184 kb on - strand, within Psyr_3988at 4747.270 kb on + strandat 4747.270 kb on + strandat 4747.270 kb on + strandat 4747.271 kb on - strandat 4747.377 kb on - strandat 4747.377 kb on - strandat 4747.377 kb on - strandat 4747.487 kb on - strandat 4747.487 kb on - strandat 4747.509 kb on + strandat 4747.509 kb on + strandat 4747.509 kb on - strandat 4747.596 kb on + strandat 4747.596 kb on + strandat 4747.597 kb on - strandat 4747.597 kb on - strandat 4747.597 kb on - strandat 4747.599 kb on - strandat 4747.599 kb on - strandat 4747.615 kb on + strandat 4747.616 kb on - strandat 4747.617 kb on + strandat 4747.617 kb on + strandat 4747.617 kb on + strandat 4747.618 kb on - strandat 4747.618 kb on - strandat 4747.618 kb on - strandat 4747.618 kb on - strandat 4747.621 kb on + strandat 4747.630 kb on - strandat 4747.662 kb on - strandat 4747.662 kb on - strandat 4747.684 kb on + strandat 4747.684 kb on + strandat 4747.684 kb on + strandat 4747.684 kb on + strandat 4747.685 kb on - strandat 4747.685 kb on - strandat 4747.685 kb on - strandat 4747.738 kb on - strandat 4747.746 kb on + strandat 4747.751 kb on + strandat 4747.751 kb on + strandat 4747.752 kb on - strandat 4747.752 kb on - strandat 4747.752 kb on - strandat 4747.762 kb on + strandat 4747.762 kb on + strandat 4747.762 kb on + strandat 4747.762 kb on + strandat 4747.763 kb on - strandat 4747.763 kb on - strandat 4747.764 kb on + strandat 4747.765 kb on - strandat 4747.765 kb on - strandat 4747.765 kb on - strandat 4747.841 kb on + strand, within Psyr_3989at 4747.903 kb on + strand, within Psyr_3989at 4747.904 kb on - strand, within Psyr_3989at 4747.904 kb on - strand, within Psyr_3989at 4747.904 kb on - strand, within Psyr_3989at 4747.912 kb on + strand, within Psyr_3989at 4747.933 kb on + strand, within Psyr_3989at 4747.934 kb on - strand, within Psyr_3989at 4747.952 kb on + strand, within Psyr_3989at 4747.952 kb on + strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4747.953 kb on - strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.075 kb on + strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.076 kb on - strand, within Psyr_3989at 4748.149 kb on + strand, within Psyr_3989at 4748.150 kb on - strand, within Psyr_3989at 4748.233 kb on - strand, within Psyr_3989at 4748.279 kb on - strand, within Psyr_3989at 4748.279 kb on - strand, within Psyr_3989at 4748.327 kb on - strand, within Psyr_3989at 4748.331 kb on + strand, within Psyr_3989at 4748.331 kb on + strand, within Psyr_3989at 4748.331 kb on + strand, within Psyr_3989at 4748.331 kb on + strand, within Psyr_3989at 4748.331 kb on + strand, within Psyr_3989

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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4,745,203 - Psyr_3987 0.29 -0.2
4,745,203 - Psyr_3987 0.29 -0.1
4,745,239 - Psyr_3987 0.32 +2.2
4,745,369 + Psyr_3987 0.44 +1.8
4,745,412 + Psyr_3987 0.47 -0.1
4,745,412 + Psyr_3987 0.47 +0.3
4,745,412 + Psyr_3987 0.47 +2.7
4,745,412 + Psyr_3987 0.47 -0.0
4,745,412 + Psyr_3987 0.47 -1.1
4,745,412 + Psyr_3987 0.47 +1.9
4,745,412 + Psyr_3987 0.47 -1.2
4,745,412 + Psyr_3987 0.47 -1.1
4,745,413 - Psyr_3987 0.47 +0.7
4,745,413 - Psyr_3987 0.47 +0.9
4,745,413 - Psyr_3987 0.47 +0.4
4,745,413 - Psyr_3987 0.47 -1.4
4,745,413 - Psyr_3987 0.47 +1.0
4,745,413 - Psyr_3987 0.47 +1.7
4,745,413 - Psyr_3987 0.47 -0.1
4,745,413 - Psyr_3987 0.47 -0.1
4,745,543 + Psyr_3987 0.59 -0.3
4,745,543 + Psyr_3987 0.59 +0.5
4,745,609 - Psyr_3987 0.64 +0.6
4,745,661 + Psyr_3987 0.69 -1.0
4,745,661 + Psyr_3987 0.69 -1.0
4,745,671 + Psyr_3987 0.70 -0.1
4,745,701 + Psyr_3987 0.72 -0.2
4,745,826 + Psyr_3987 0.83 -0.6
4,745,826 + Psyr_3987 0.83 +0.2
4,745,826 + Psyr_3987 0.83 +0.9
4,745,826 + Psyr_3987 0.83 -0.4
4,745,827 - Psyr_3987 0.83 +0.3
4,745,827 - Psyr_3987 0.83 -1.2
4,745,827 - Psyr_3987 0.83 +1.2
4,746,080 + -0.1
4,746,177 - -0.1
4,746,226 + -0.5
4,746,258 + -0.6
4,746,259 - +0.2
4,746,259 - +0.4
4,746,320 + Psyr_3988 0.12 -1.0
4,746,320 + Psyr_3988 0.12 +1.7
4,746,321 - Psyr_3988 0.13 -1.9
4,746,321 - Psyr_3988 0.13 -0.1
4,746,434 - Psyr_3988 0.22 +0.8
4,746,539 + Psyr_3988 0.30 +1.0
4,746,539 + Psyr_3988 0.30 +1.2
4,746,539 + Psyr_3988 0.30 +0.7
4,746,540 - Psyr_3988 0.30 +1.6
4,746,551 - Psyr_3988 0.31 +0.1
4,746,563 + Psyr_3988 0.32 +0.6
4,746,614 + Psyr_3988 0.37 +0.2
4,746,615 - Psyr_3988 0.37 +0.9
4,746,615 - Psyr_3988 0.37 -0.2
4,746,748 + Psyr_3988 0.48 -0.7
4,746,748 + Psyr_3988 0.48 +0.6
4,746,749 - Psyr_3988 0.48 +0.9
4,746,749 - Psyr_3988 0.48 +0.4
4,746,772 + Psyr_3988 0.49 -0.1
4,746,773 - Psyr_3988 0.50 -0.1
4,746,869 + Psyr_3988 0.57 +0.2
4,746,870 - Psyr_3988 0.57 +0.1
4,746,964 + Psyr_3988 0.65 -0.1
4,747,184 - Psyr_3988 0.83 -1.0
4,747,184 - Psyr_3988 0.83 -1.0
4,747,270 + -0.2
4,747,270 + -0.1
4,747,270 + -0.5
4,747,271 - -0.4
4,747,377 - +1.8
4,747,377 - +1.2
4,747,377 - +0.9
4,747,487 - +0.3
4,747,487 - -0.7
4,747,509 + +0.8
4,747,509 + -0.5
4,747,509 - +0.5
4,747,596 + +2.9
4,747,596 + -0.9
4,747,597 - -0.9
4,747,597 - -0.9
4,747,597 - -1.2
4,747,599 - +1.2
4,747,599 - +1.7
4,747,615 + +0.6
4,747,616 - -1.4
4,747,617 + +0.2
4,747,617 + +0.1
4,747,617 + -2.5
4,747,618 - -0.5
4,747,618 - +0.4
4,747,618 - +0.1
4,747,618 - +0.7
4,747,621 + +0.1
4,747,630 - +0.8
4,747,662 - -0.4
4,747,662 - -1.9
4,747,684 + +1.1
4,747,684 + -0.7
4,747,684 + +0.3
4,747,684 + -1.2
4,747,685 - -0.3
4,747,685 - -0.9
4,747,685 - +0.9
4,747,738 - -0.9
4,747,746 + +0.1
4,747,751 + +0.3
4,747,751 + -1.2
4,747,752 - -2.3
4,747,752 - -0.0
4,747,752 - +0.7
4,747,762 + -0.1
4,747,762 + +0.1
4,747,762 + -0.3
4,747,762 + +0.3
4,747,763 - -2.7
4,747,763 - +0.3
4,747,764 + -0.6
4,747,765 - +0.2
4,747,765 - +1.9
4,747,765 - -1.6
4,747,841 + Psyr_3989 0.13 -0.2
4,747,903 + Psyr_3989 0.18 -0.2
4,747,904 - Psyr_3989 0.18 -1.0
4,747,904 - Psyr_3989 0.18 -0.2
4,747,904 - Psyr_3989 0.18 -0.1
4,747,912 + Psyr_3989 0.19 -1.2
4,747,933 + Psyr_3989 0.20 +0.8
4,747,934 - Psyr_3989 0.20 -2.7
4,747,952 + Psyr_3989 0.22 -2.5
4,747,952 + Psyr_3989 0.22 -0.8
4,747,953 - Psyr_3989 0.22 -3.3
4,747,953 - Psyr_3989 0.22 +0.4
4,747,953 - Psyr_3989 0.22 -0.9
4,747,953 - Psyr_3989 0.22 -1.4
4,747,953 - Psyr_3989 0.22 +0.6
4,747,953 - Psyr_3989 0.22 -0.3
4,748,075 + Psyr_3989 0.32 -1.9
4,748,075 + Psyr_3989 0.32 +1.9
4,748,075 + Psyr_3989 0.32 -0.0
4,748,075 + Psyr_3989 0.32 -0.1
4,748,075 + Psyr_3989 0.32 +1.2
4,748,076 - Psyr_3989 0.32 -0.5
4,748,076 - Psyr_3989 0.32 +1.9
4,748,076 - Psyr_3989 0.32 +1.9
4,748,076 - Psyr_3989 0.32 +0.4
4,748,076 - Psyr_3989 0.32 -0.2
4,748,076 - Psyr_3989 0.32 +1.9
4,748,149 + Psyr_3989 0.38 +0.4
4,748,150 - Psyr_3989 0.38 -1.4
4,748,233 - Psyr_3989 0.45 -0.5
4,748,279 - Psyr_3989 0.49 +0.1
4,748,279 - Psyr_3989 0.49 +0.2
4,748,327 - Psyr_3989 0.53 -0.6
4,748,331 + Psyr_3989 0.53 +1.5
4,748,331 + Psyr_3989 0.53 +1.6
4,748,331 + Psyr_3989 0.53 +2.1
4,748,331 + Psyr_3989 0.53 +0.5
4,748,331 + Psyr_3989 0.53 +0.8

Or see this region's nucleotide sequence