Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3956 and Psyr_3957 are separated by 8 nucleotides Psyr_3957 and Psyr_3958 are separated by 33 nucleotides Psyr_3958 and Psyr_3959 are separated by 497 nucleotides
Psyr_3956: Psyr_3956 - sigma E regulatory protein, MucB/RseB, at 4,704,426 to 4,705,385
_3956
Psyr_3957: Psyr_3957 - anti sigma-E protein, RseA, at 4,705,394 to 4,705,984
_3957
Psyr_3958: Psyr_3958 - RNA polymerase, sigma-24 subunit, RpoE, at 4,706,018 to 4,706,599
_3958
Psyr_3959: Psyr_3959 - L-aspartate oxidase, at 4,707,097 to 4,708,713
_3959
Position (kb) 4706
4707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4705.146 kb on + strand, within Psyr_3956 at 4705.146 kb on + strand, within Psyr_3956 at 4705.146 kb on + strand, within Psyr_3956 at 4705.147 kb on - strand, within Psyr_3956 at 4705.147 kb on - strand, within Psyr_3956 at 4705.173 kb on + strand, within Psyr_3956 at 4705.174 kb on - strand, within Psyr_3956 at 4705.191 kb on - strand, within Psyr_3956 at 4705.191 kb on - strand, within Psyr_3956 at 4705.191 kb on - strand, within Psyr_3956 at 4705.203 kb on + strand, within Psyr_3956 at 4705.236 kb on - strand, within Psyr_3956 at 4705.249 kb on + strand, within Psyr_3956 at 4705.251 kb on + strand, within Psyr_3956 at 4705.252 kb on - strand, within Psyr_3956 at 4705.252 kb on - strand, within Psyr_3956 at 4705.259 kb on + strand, within Psyr_3956 at 4705.260 kb on - strand, within Psyr_3956 at 4705.267 kb on + strand, within Psyr_3956 at 4705.368 kb on + strand at 4705.368 kb on + strand at 4706.050 kb on + strand at 4706.092 kb on + strand, within Psyr_3958 at 4706.130 kb on + strand, within Psyr_3958 at 4706.130 kb on + strand, within Psyr_3958 at 4706.130 kb on + strand, within Psyr_3958 at 4706.131 kb on - strand, within Psyr_3958 at 4706.131 kb on - strand, within Psyr_3958 at 4706.154 kb on - strand, within Psyr_3958 at 4706.167 kb on + strand, within Psyr_3958 at 4706.167 kb on + strand, within Psyr_3958 at 4706.167 kb on + strand, within Psyr_3958 at 4706.171 kb on + strand, within Psyr_3958 at 4706.171 kb on + strand, within Psyr_3958 at 4706.172 kb on - strand, within Psyr_3958 at 4706.172 kb on - strand, within Psyr_3958 at 4706.172 kb on - strand, within Psyr_3958 at 4706.280 kb on + strand, within Psyr_3958 at 4706.280 kb on + strand, within Psyr_3958 at 4706.280 kb on + strand, within Psyr_3958 at 4706.281 kb on - strand, within Psyr_3958 at 4706.281 kb on - strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.303 kb on + strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.304 kb on - strand, within Psyr_3958 at 4706.343 kb on + strand, within Psyr_3958 at 4706.343 kb on + strand, within Psyr_3958 at 4706.343 kb on + strand, within Psyr_3958 at 4706.343 kb on + strand, within Psyr_3958 at 4706.344 kb on - strand, within Psyr_3958 at 4706.360 kb on - strand, within Psyr_3958 at 4706.373 kb on + strand, within Psyr_3958 at 4706.385 kb on + strand, within Psyr_3958 at 4706.386 kb on - strand, within Psyr_3958 at 4706.425 kb on - strand, within Psyr_3958 at 4706.435 kb on - strand, within Psyr_3958 at 4706.499 kb on - strand, within Psyr_3958 at 4706.514 kb on + strand, within Psyr_3958 at 4706.514 kb on + strand, within Psyr_3958 at 4706.514 kb on + strand, within Psyr_3958 at 4706.515 kb on - strand, within Psyr_3958 at 4706.515 kb on - strand, within Psyr_3958 at 4706.515 kb on - strand, within Psyr_3958 at 4706.558 kb on + strand at 4706.558 kb on + strand at 4706.559 kb on - strand at 4706.594 kb on + strand at 4706.640 kb on - strand at 4706.640 kb on - strand at 4706.660 kb on + strand at 4706.661 kb on - strand at 4706.661 kb on - strand at 4706.661 kb on - strand at 4706.719 kb on + strand at 4706.720 kb on - strand at 4706.765 kb on + strand at 4706.765 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.800 kb on + strand at 4706.801 kb on - strand at 4706.801 kb on - strand at 4706.801 kb on - strand at 4706.804 kb on + strand at 4706.805 kb on - strand at 4706.834 kb on + strand at 4706.864 kb on - strand at 4706.911 kb on + strand at 4707.031 kb on + strand at 4707.031 kb on + strand at 4707.031 kb on + strand at 4707.032 kb on - strand at 4707.032 kb on - strand at 4707.042 kb on - strand at 4707.060 kb on + strand at 4707.060 kb on + strand at 4707.061 kb on - strand at 4707.061 kb on - strand at 4707.061 kb on - strand at 4707.061 kb on - strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.064 kb on + strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.065 kb on - strand at 4707.066 kb on + strand at 4707.066 kb on + strand at 4707.066 kb on + strand at 4707.066 kb on + strand at 4707.066 kb on + strand at 4707.066 kb on + strand at 4707.066 kb on + strand at 4707.067 kb on - strand at 4707.067 kb on - strand at 4707.067 kb on - strand at 4707.067 kb on - strand at 4707.067 kb on - strand at 4707.067 kb on - strand at 4707.067 kb on - strand at 4707.069 kb on + strand at 4707.069 kb on + strand at 4707.069 kb on + strand at 4707.070 kb on - strand at 4707.070 kb on - strand at 4707.122 kb on + strand at 4707.122 kb on + strand at 4707.122 kb on + strand at 4707.122 kb on + strand at 4707.122 kb on + strand at 4707.123 kb on - strand at 4707.123 kb on - strand at 4707.129 kb on - strand at 4707.471 kb on + strand, within Psyr_3959
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 4,705,146 + Psyr_3956 0.75 -0.1 4,705,146 + Psyr_3956 0.75 -0.2 4,705,146 + Psyr_3956 0.75 +0.4 4,705,147 - Psyr_3956 0.75 +0.4 4,705,147 - Psyr_3956 0.75 -0.4 4,705,173 + Psyr_3956 0.78 -0.2 4,705,174 - Psyr_3956 0.78 +0.5 4,705,191 - Psyr_3956 0.80 -0.7 4,705,191 - Psyr_3956 0.80 +0.8 4,705,191 - Psyr_3956 0.80 -1.6 4,705,203 + Psyr_3956 0.81 -0.2 4,705,236 - Psyr_3956 0.84 -1.1 4,705,249 + Psyr_3956 0.86 -0.2 4,705,251 + Psyr_3956 0.86 -0.3 4,705,252 - Psyr_3956 0.86 -1.3 4,705,252 - Psyr_3956 0.86 +0.4 4,705,259 + Psyr_3956 0.87 +0.4 4,705,260 - Psyr_3956 0.87 -2.2 4,705,267 + Psyr_3956 0.88 +0.1 4,705,368 + +0.5 4,705,368 + +0.3 4,706,050 + -0.7 4,706,092 + Psyr_3958 0.13 -1.1 4,706,130 + Psyr_3958 0.19 +0.3 4,706,130 + Psyr_3958 0.19 +0.0 4,706,130 + Psyr_3958 0.19 +0.9 4,706,131 - Psyr_3958 0.19 -0.3 4,706,131 - Psyr_3958 0.19 -0.1 4,706,154 - Psyr_3958 0.23 +0.9 4,706,167 + Psyr_3958 0.26 -2.2 4,706,167 + Psyr_3958 0.26 -1.1 4,706,167 + Psyr_3958 0.26 -2.0 4,706,171 + Psyr_3958 0.26 -0.7 4,706,171 + Psyr_3958 0.26 -0.4 4,706,172 - Psyr_3958 0.26 -1.5 4,706,172 - Psyr_3958 0.26 -1.7 4,706,172 - Psyr_3958 0.26 +0.6 4,706,280 + Psyr_3958 0.45 -1.3 4,706,280 + Psyr_3958 0.45 +0.2 4,706,280 + Psyr_3958 0.45 -0.7 4,706,281 - Psyr_3958 0.45 -1.2 4,706,281 - Psyr_3958 0.45 -0.9 4,706,303 + Psyr_3958 0.49 -1.5 4,706,303 + Psyr_3958 0.49 +0.9 4,706,303 + Psyr_3958 0.49 +1.9 4,706,303 + Psyr_3958 0.49 -1.5 4,706,303 + Psyr_3958 0.49 -0.2 4,706,303 + Psyr_3958 0.49 -2.5 4,706,303 + Psyr_3958 0.49 -1.5 4,706,303 + Psyr_3958 0.49 -0.7 4,706,303 + Psyr_3958 0.49 -0.1 4,706,304 - Psyr_3958 0.49 -0.2 4,706,304 - Psyr_3958 0.49 -0.1 4,706,304 - Psyr_3958 0.49 -0.2 4,706,304 - Psyr_3958 0.49 -0.6 4,706,304 - Psyr_3958 0.49 -1.3 4,706,304 - Psyr_3958 0.49 -2.2 4,706,304 - Psyr_3958 0.49 -1.0 4,706,304 - Psyr_3958 0.49 +0.9 4,706,304 - Psyr_3958 0.49 +0.0 4,706,343 + Psyr_3958 0.56 -0.9 4,706,343 + Psyr_3958 0.56 +0.2 4,706,343 + Psyr_3958 0.56 -1.8 4,706,343 + Psyr_3958 0.56 -0.1 4,706,344 - Psyr_3958 0.56 -1.3 4,706,360 - Psyr_3958 0.59 +0.3 4,706,373 + Psyr_3958 0.61 -1.7 4,706,385 + Psyr_3958 0.63 -0.1 4,706,386 - Psyr_3958 0.63 -1.9 4,706,425 - Psyr_3958 0.70 -1.5 4,706,435 - Psyr_3958 0.72 -1.1 4,706,499 - Psyr_3958 0.83 -2.3 4,706,514 + Psyr_3958 0.85 +1.7 4,706,514 + Psyr_3958 0.85 -2.2 4,706,514 + Psyr_3958 0.85 -2.0 4,706,515 - Psyr_3958 0.85 -1.9 4,706,515 - Psyr_3958 0.85 -1.9 4,706,515 - Psyr_3958 0.85 +0.6 4,706,558 + -2.5 4,706,558 + -2.1 4,706,559 - -1.3 4,706,594 + -0.1 4,706,640 - +0.6 4,706,640 - -0.4 4,706,660 + -1.3 4,706,661 - -1.4 4,706,661 - +0.1 4,706,661 - +0.4 4,706,719 + -1.1 4,706,720 - +0.1 4,706,765 + -1.1 4,706,765 + -1.7 4,706,800 + -2.1 4,706,800 + -1.7 4,706,800 + +0.3 4,706,800 + -0.4 4,706,800 + -0.4 4,706,800 + -2.1 4,706,800 + -0.8 4,706,800 + +0.7 4,706,800 + -2.3 4,706,800 + -2.1 4,706,801 - -0.5 4,706,801 - +0.4 4,706,801 - +0.0 4,706,804 + -0.9 4,706,805 - +2.5 4,706,834 + -1.8 4,706,864 - -0.7 4,706,911 + -0.1 4,707,031 + -1.4 4,707,031 + -0.4 4,707,031 + -1.1 4,707,032 - +0.6 4,707,032 - -0.2 4,707,042 - +0.3 4,707,060 + -0.8 4,707,060 + -1.1 4,707,061 - +0.9 4,707,061 - -0.1 4,707,061 - +2.8 4,707,061 - +0.2 4,707,064 + -1.3 4,707,064 + -0.6 4,707,064 + -0.3 4,707,064 + -0.9 4,707,064 + +0.1 4,707,064 + +0.8 4,707,064 + -0.3 4,707,064 + -0.2 4,707,064 + -0.4 4,707,064 + -2.7 4,707,064 + -0.5 4,707,064 + -1.9 4,707,064 + +0.4 4,707,064 + -1.3 4,707,064 + -1.9 4,707,064 + -0.9 4,707,064 + -0.3 4,707,064 + -0.4 4,707,064 + -1.3 4,707,064 + -1.4 4,707,064 + -0.6 4,707,064 + -0.7 4,707,065 - +1.1 4,707,065 - +0.9 4,707,065 - -0.2 4,707,065 - +1.9 4,707,065 - +1.8 4,707,065 - +1.6 4,707,065 - +0.6 4,707,065 - +0.8 4,707,065 - +0.4 4,707,065 - +0.4 4,707,065 - +0.3 4,707,065 - -0.5 4,707,065 - +0.9 4,707,066 + -1.1 4,707,066 + -0.9 4,707,066 + -0.5 4,707,066 + -1.1 4,707,066 + +0.6 4,707,066 + -1.8 4,707,066 + -0.6 4,707,067 - +0.1 4,707,067 - -2.1 4,707,067 - +2.5 4,707,067 - -0.9 4,707,067 - -0.2 4,707,067 - -0.1 4,707,067 - -3.2 4,707,069 + -0.1 4,707,069 + -0.7 4,707,069 + +0.1 4,707,070 - +3.5 4,707,070 - -0.5 4,707,122 + -2.3 4,707,122 + -0.0 4,707,122 + -1.8 4,707,122 + -2.4 4,707,122 + -0.4 4,707,123 - +0.2 4,707,123 - +0.4 4,707,129 - +0.8 4,707,471 + Psyr_3959 0.23 +1.0
Or see this region's nucleotide sequence