Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3887 and Psyr_3888 overlap by 4 nucleotides Psyr_3888 and Psyr_3889 are separated by 106 nucleotides Psyr_3889 and Psyr_3890 are separated by 156 nucleotides
Psyr_3887: Psyr_3887 - Electron transport complex, RnfABCDGE type, B subunit, at 4,628,708 to 4,629,583
_3887
Psyr_3888: Psyr_3888 - endonuclease III / DNA-(apurinic or apyrimidinic site) lyase, at 4,629,580 to 4,630,218
_3888
Psyr_3889: Psyr_3889 - conserved hypothetical protein, at 4,630,325 to 4,630,507
_3889
Psyr_3890: Psyr_3890 - regulatory protein, LuxR:Response regulator receiver, at 4,630,664 to 4,631,290
_3890
Position (kb) 4630
4631 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4629.713 kb on + strand, within Psyr_3888 at 4629.713 kb on + strand, within Psyr_3888 at 4629.714 kb on - strand, within Psyr_3888 at 4629.714 kb on - strand, within Psyr_3888 at 4629.723 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.772 kb on + strand, within Psyr_3888 at 4629.773 kb on - strand, within Psyr_3888 at 4629.773 kb on - strand, within Psyr_3888 at 4629.773 kb on - strand, within Psyr_3888 at 4629.773 kb on - strand, within Psyr_3888 at 4629.773 kb on - strand, within Psyr_3888 at 4629.773 kb on - strand, within Psyr_3888 at 4629.773 kb on - strand, within Psyr_3888 at 4629.785 kb on + strand, within Psyr_3888 at 4629.786 kb on - strand, within Psyr_3888 at 4629.786 kb on - strand, within Psyr_3888 at 4629.802 kb on + strand, within Psyr_3888 at 4629.802 kb on + strand, within Psyr_3888 at 4629.802 kb on + strand, within Psyr_3888 at 4629.803 kb on - strand, within Psyr_3888 at 4629.823 kb on + strand, within Psyr_3888 at 4629.823 kb on + strand, within Psyr_3888 at 4629.823 kb on + strand, within Psyr_3888 at 4629.824 kb on - strand, within Psyr_3888 at 4629.999 kb on + strand, within Psyr_3888 at 4629.999 kb on + strand, within Psyr_3888 at 4629.999 kb on + strand, within Psyr_3888 at 4629.999 kb on + strand, within Psyr_3888 at 4630.000 kb on - strand, within Psyr_3888 at 4630.000 kb on - strand, within Psyr_3888 at 4630.000 kb on - strand, within Psyr_3888 at 4630.000 kb on - strand, within Psyr_3888 at 4630.000 kb on - strand, within Psyr_3888 at 4630.133 kb on - strand, within Psyr_3888 at 4630.150 kb on - strand, within Psyr_3888 at 4630.173 kb on + strand at 4630.175 kb on + strand at 4630.175 kb on + strand at 4630.175 kb on + strand at 4630.175 kb on + strand at 4630.175 kb on + strand at 4630.176 kb on - strand at 4630.176 kb on - strand at 4630.176 kb on - strand at 4630.176 kb on - strand at 4630.176 kb on - strand at 4630.192 kb on + strand at 4630.192 kb on + strand at 4630.193 kb on - strand at 4630.193 kb on - strand at 4630.193 kb on - strand at 4630.193 kb on - strand at 4630.230 kb on + strand at 4630.230 kb on + strand at 4630.230 kb on + strand at 4630.230 kb on + strand at 4630.231 kb on - strand at 4630.231 kb on - strand at 4630.231 kb on - strand at 4630.231 kb on - strand at 4630.286 kb on + strand at 4630.286 kb on + strand at 4630.286 kb on + strand at 4630.286 kb on + strand at 4630.286 kb on + strand at 4630.286 kb on + strand at 4630.286 kb on + strand at 4630.287 kb on - strand at 4630.287 kb on - strand at 4630.287 kb on - strand at 4630.287 kb on - strand at 4630.287 kb on - strand at 4630.287 kb on - strand at 4630.287 kb on - strand at 4630.287 kb on - strand at 4630.353 kb on + strand, within Psyr_3889 at 4630.353 kb on + strand, within Psyr_3889 at 4630.353 kb on + strand, within Psyr_3889 at 4630.353 kb on + strand, within Psyr_3889 at 4630.354 kb on - strand, within Psyr_3889 at 4630.354 kb on - strand, within Psyr_3889 at 4630.490 kb on + strand at 4630.505 kb on + strand at 4630.580 kb on + strand at 4630.580 kb on + strand at 4630.580 kb on + strand at 4630.580 kb on + strand at 4630.581 kb on - strand at 4630.581 kb on - strand at 4630.591 kb on + strand at 4630.592 kb on - strand at 4630.744 kb on + strand, within Psyr_3890 at 4630.744 kb on + strand, within Psyr_3890 at 4630.745 kb on - strand, within Psyr_3890 at 4630.745 kb on - strand, within Psyr_3890 at 4630.745 kb on - strand, within Psyr_3890 at 4630.746 kb on + strand, within Psyr_3890 at 4630.746 kb on + strand, within Psyr_3890 at 4630.746 kb on + strand, within Psyr_3890 at 4630.746 kb on + strand, within Psyr_3890 at 4630.747 kb on - strand, within Psyr_3890 at 4630.747 kb on - strand, within Psyr_3890 at 4630.923 kb on + strand, within Psyr_3890 at 4630.924 kb on - strand, within Psyr_3890 at 4630.924 kb on - strand, within Psyr_3890 at 4630.924 kb on - strand, within Psyr_3890 at 4630.930 kb on - strand, within Psyr_3890 at 4630.993 kb on - strand, within Psyr_3890 at 4630.993 kb on - strand, within Psyr_3890 at 4631.214 kb on + strand, within Psyr_3890 at 4631.215 kb on - strand, within Psyr_3890 at 4631.240 kb on + strand at 4631.284 kb on + strand at 4631.284 kb on + strand at 4631.284 kb on + strand at 4631.285 kb on - strand at 4631.285 kb on - strand at 4631.285 kb on - strand at 4631.335 kb on + strand at 4631.335 kb on + strand at 4631.336 kb on - strand at 4631.341 kb on - strand at 4631.407 kb on - strand at 4631.428 kb on - strand at 4631.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 4,629,713 + Psyr_3888 0.21 -0.3 4,629,713 + Psyr_3888 0.21 +0.2 4,629,714 - Psyr_3888 0.21 -0.9 4,629,714 - Psyr_3888 0.21 -2.2 4,629,723 + Psyr_3888 0.22 -1.0 4,629,772 + Psyr_3888 0.30 +1.3 4,629,772 + Psyr_3888 0.30 +1.5 4,629,772 + Psyr_3888 0.30 -2.4 4,629,772 + Psyr_3888 0.30 -1.0 4,629,772 + Psyr_3888 0.30 +0.8 4,629,772 + Psyr_3888 0.30 -0.6 4,629,772 + Psyr_3888 0.30 -0.0 4,629,772 + Psyr_3888 0.30 -0.0 4,629,772 + Psyr_3888 0.30 +5.0 4,629,773 - Psyr_3888 0.30 -1.3 4,629,773 - Psyr_3888 0.30 +2.5 4,629,773 - Psyr_3888 0.30 +0.6 4,629,773 - Psyr_3888 0.30 +1.2 4,629,773 - Psyr_3888 0.30 -3.0 4,629,773 - Psyr_3888 0.30 +1.6 4,629,773 - Psyr_3888 0.30 +0.5 4,629,785 + Psyr_3888 0.32 +0.5 4,629,786 - Psyr_3888 0.32 -0.4 4,629,786 - Psyr_3888 0.32 +1.3 4,629,802 + Psyr_3888 0.35 -0.2 4,629,802 + Psyr_3888 0.35 +0.2 4,629,802 + Psyr_3888 0.35 +0.7 4,629,803 - Psyr_3888 0.35 -1.3 4,629,823 + Psyr_3888 0.38 -0.2 4,629,823 + Psyr_3888 0.38 -1.1 4,629,823 + Psyr_3888 0.38 +0.2 4,629,824 - Psyr_3888 0.38 +0.3 4,629,999 + Psyr_3888 0.66 +1.1 4,629,999 + Psyr_3888 0.66 +0.7 4,629,999 + Psyr_3888 0.66 +0.5 4,629,999 + Psyr_3888 0.66 +0.5 4,630,000 - Psyr_3888 0.66 +1.4 4,630,000 - Psyr_3888 0.66 -0.6 4,630,000 - Psyr_3888 0.66 +2.5 4,630,000 - Psyr_3888 0.66 +0.7 4,630,000 - Psyr_3888 0.66 +2.5 4,630,133 - Psyr_3888 0.87 +0.1 4,630,150 - Psyr_3888 0.89 -0.9 4,630,173 + -0.0 4,630,175 + -0.5 4,630,175 + -0.4 4,630,175 + +0.5 4,630,175 + -1.0 4,630,175 + -0.8 4,630,176 - +1.7 4,630,176 - +1.7 4,630,176 - -0.0 4,630,176 - -0.4 4,630,176 - +0.3 4,630,192 + +0.1 4,630,192 + +0.1 4,630,193 - -0.9 4,630,193 - +0.5 4,630,193 - -0.6 4,630,193 - -0.0 4,630,230 + +1.8 4,630,230 + -0.5 4,630,230 + -0.2 4,630,230 + -0.7 4,630,231 - +0.0 4,630,231 - +1.4 4,630,231 - -0.2 4,630,231 - -0.2 4,630,286 + -1.3 4,630,286 + -1.0 4,630,286 + -0.2 4,630,286 + +0.2 4,630,286 + +1.4 4,630,286 + +0.0 4,630,286 + +0.3 4,630,287 - -3.0 4,630,287 - -1.0 4,630,287 - +0.5 4,630,287 - -0.4 4,630,287 - +0.8 4,630,287 - +0.5 4,630,287 - -1.7 4,630,287 - +1.3 4,630,353 + Psyr_3889 0.15 -0.6 4,630,353 + Psyr_3889 0.15 -0.5 4,630,353 + Psyr_3889 0.15 -1.3 4,630,353 + Psyr_3889 0.15 -1.0 4,630,354 - Psyr_3889 0.16 -0.6 4,630,354 - Psyr_3889 0.16 +0.3 4,630,490 + -0.6 4,630,505 + -0.0 4,630,580 + +0.4 4,630,580 + +1.0 4,630,580 + +0.2 4,630,580 + +1.0 4,630,581 - -0.4 4,630,581 - -1.0 4,630,591 + -0.2 4,630,592 - -0.6 4,630,744 + Psyr_3890 0.13 +0.4 4,630,744 + Psyr_3890 0.13 +0.6 4,630,745 - Psyr_3890 0.13 -1.0 4,630,745 - Psyr_3890 0.13 -0.1 4,630,745 - Psyr_3890 0.13 +0.4 4,630,746 + Psyr_3890 0.13 +0.5 4,630,746 + Psyr_3890 0.13 +1.0 4,630,746 + Psyr_3890 0.13 -1.2 4,630,746 + Psyr_3890 0.13 -1.0 4,630,747 - Psyr_3890 0.13 -0.3 4,630,747 - Psyr_3890 0.13 -0.5 4,630,923 + Psyr_3890 0.41 +0.1 4,630,924 - Psyr_3890 0.41 +0.8 4,630,924 - Psyr_3890 0.41 +1.1 4,630,924 - Psyr_3890 0.41 +1.4 4,630,930 - Psyr_3890 0.42 -1.3 4,630,993 - Psyr_3890 0.52 -0.9 4,630,993 - Psyr_3890 0.52 +1.3 4,631,214 + Psyr_3890 0.88 -0.9 4,631,215 - Psyr_3890 0.88 -2.3 4,631,240 + -0.6 4,631,284 + +0.1 4,631,284 + +1.1 4,631,284 + -0.1 4,631,285 - -0.6 4,631,285 - +0.6 4,631,285 - +1.0 4,631,335 + -0.1 4,631,335 + -1.2 4,631,336 - -0.3 4,631,341 - -1.0 4,631,407 - +0.7 4,631,428 - -0.6 4,631,443 - +1.0
Or see this region's nucleotide sequence