Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3840 and Psyr_3841 are separated by 100 nucleotides Psyr_3841 and Psyr_3842 are separated by 233 nucleotides Psyr_3842 and Psyr_3843 are separated by 535 nucleotides
Psyr_3840: Psyr_3840 - conserved hypothetical protein, at 4,576,432 to 4,576,590
_3840
Psyr_3841: Psyr_3841 - conserved hypothetical protein, at 4,576,691 to 4,577,032
_3841
Psyr_3842: Psyr_3842 - SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit, at 4,577,266 to 4,580,112
_3842
Psyr_3843: Psyr_3843 - diguanylate cyclase/phosphodiesterase, at 4,580,648 to 4,582,939
_3843
Position (kb) 4577
4578
4579
4580
4581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4576.350 kb on - strand at 4576.393 kb on + strand at 4576.444 kb on - strand at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.540 kb on - strand, within Psyr_3840 at 4576.628 kb on - strand at 4576.891 kb on + strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.038 kb on + strand at 4577.039 kb on - strand at 4577.101 kb on + strand at 4577.109 kb on + strand at 4577.109 kb on + strand at 4577.110 kb on - strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.142 kb on - strand at 4577.142 kb on - strand at 4577.142 kb on - strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.235 kb on - strand at 4577.235 kb on - strand at 4577.278 kb on + strand at 4577.278 kb on + strand at 4577.279 kb on - strand at 4577.653 kb on + strand, within Psyr_3842 at 4577.654 kb on - strand, within Psyr_3842 at 4577.654 kb on - strand, within Psyr_3842 at 4578.186 kb on - strand, within Psyr_3842 at 4578.859 kb on + strand, within Psyr_3842 at 4578.860 kb on - strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.116 kb on + strand, within Psyr_3842 at 4579.117 kb on - strand, within Psyr_3842 at 4579.363 kb on + strand, within Psyr_3842 at 4579.363 kb on + strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.364 kb on - strand, within Psyr_3842 at 4579.495 kb on - strand, within Psyr_3842 at 4579.495 kb on - strand, within Psyr_3842 at 4579.670 kb on - strand, within Psyr_3842 at 4579.670 kb on - strand, within Psyr_3842 at 4579.715 kb on - strand, within Psyr_3842 at 4580.316 kb on - strand at 4580.450 kb on + strand at 4580.560 kb on + strand at 4580.560 kb on + strand at 4580.573 kb on + strand at 4580.573 kb on + strand at 4580.574 kb on - strand at 4580.574 kb on - strand at 4580.574 kb on - strand at 4580.574 kb on - strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.584 kb on + strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.585 kb on - strand at 4580.586 kb on + strand at 4580.586 kb on + strand at 4580.586 kb on + strand at 4580.586 kb on + strand at 4580.587 kb on - strand at 4580.587 kb on - strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.595 kb on + strand at 4580.596 kb on - strand at 4580.596 kb on - strand at 4580.596 kb on - strand at 4580.638 kb on - strand at 4580.647 kb on + strand at 4580.647 kb on + strand at 4580.648 kb on - strand at 4580.670 kb on + strand at 4580.670 kb on + strand at 4580.670 kb on + strand at 4580.671 kb on - strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.700 kb on + strand at 4580.701 kb on - strand at 4580.701 kb on - strand at 4580.713 kb on + strand at 4580.714 kb on - strand at 4580.714 kb on - strand at 4580.782 kb on + strand at 4580.890 kb on + strand, within Psyr_3843 at 4580.890 kb on + strand, within Psyr_3843 at 4580.890 kb on + strand, within Psyr_3843 at 4580.891 kb on - strand, within Psyr_3843 at 4580.891 kb on - strand, within Psyr_3843 at 4580.891 kb on - strand, within Psyr_3843 at 4580.961 kb on + strand, within Psyr_3843 at 4580.962 kb on - strand, within Psyr_3843 at 4580.962 kb on - strand, within Psyr_3843 at 4580.962 kb on - strand, within Psyr_3843 at 4581.071 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.110 kb on + strand, within Psyr_3843 at 4581.111 kb on - strand, within Psyr_3843 at 4581.111 kb on - strand, within Psyr_3843 at 4581.111 kb on - strand, within Psyr_3843
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 4,576,350 - +0.0 4,576,393 + -0.2 4,576,444 - +0.1 4,576,504 + Psyr_3840 0.45 +1.0 4,576,504 + Psyr_3840 0.45 +0.1 4,576,504 + Psyr_3840 0.45 +0.2 4,576,505 - Psyr_3840 0.46 +0.8 4,576,505 - Psyr_3840 0.46 +0.6 4,576,505 - Psyr_3840 0.46 -0.1 4,576,505 - Psyr_3840 0.46 +2.0 4,576,505 - Psyr_3840 0.46 +1.0 4,576,505 - Psyr_3840 0.46 -1.0 4,576,540 - Psyr_3840 0.68 -1.3 4,576,628 - +1.3 4,576,891 + Psyr_3841 0.58 -0.4 4,576,892 - Psyr_3841 0.59 +0.2 4,576,892 - Psyr_3841 0.59 +0.4 4,577,020 + +0.5 4,577,020 + +2.0 4,577,020 + -1.0 4,577,020 + -0.6 4,577,020 + +0.8 4,577,020 + +2.0 4,577,020 + +1.6 4,577,020 + +0.0 4,577,020 + -0.1 4,577,020 + -0.2 4,577,021 - -1.6 4,577,021 - -1.1 4,577,021 - +0.6 4,577,021 - +0.8 4,577,021 - -0.8 4,577,021 - -0.3 4,577,021 - -0.9 4,577,021 - +0.6 4,577,038 + +0.3 4,577,039 - +0.1 4,577,101 + +3.3 4,577,109 + +1.2 4,577,109 + +1.5 4,577,110 - -0.2 4,577,111 + +1.0 4,577,111 + +2.2 4,577,111 + -0.0 4,577,112 - -0.3 4,577,112 - -1.1 4,577,112 - +0.6 4,577,141 + +0.7 4,577,141 + +0.8 4,577,141 + -0.5 4,577,142 - -0.0 4,577,142 - -0.0 4,577,142 - -0.2 4,577,234 + -0.2 4,577,234 + -0.9 4,577,235 - -1.7 4,577,235 - -0.3 4,577,278 + +1.0 4,577,278 + -2.6 4,577,279 - -0.7 4,577,653 + Psyr_3842 0.14 -1.4 4,577,654 - Psyr_3842 0.14 -1.7 4,577,654 - Psyr_3842 0.14 +0.5 4,578,186 - Psyr_3842 0.32 -0.3 4,578,859 + Psyr_3842 0.56 -0.9 4,578,860 - Psyr_3842 0.56 -1.4 4,579,116 + Psyr_3842 0.65 +0.5 4,579,116 + Psyr_3842 0.65 -1.4 4,579,116 + Psyr_3842 0.65 -0.9 4,579,116 + Psyr_3842 0.65 +1.9 4,579,117 - Psyr_3842 0.65 +1.3 4,579,363 + Psyr_3842 0.74 -1.6 4,579,363 + Psyr_3842 0.74 -0.5 4,579,364 - Psyr_3842 0.74 -3.6 4,579,364 - Psyr_3842 0.74 -1.0 4,579,364 - Psyr_3842 0.74 -0.2 4,579,364 - Psyr_3842 0.74 -1.7 4,579,364 - Psyr_3842 0.74 -0.9 4,579,364 - Psyr_3842 0.74 +0.8 4,579,495 - Psyr_3842 0.78 -1.9 4,579,495 - Psyr_3842 0.78 -1.5 4,579,670 - Psyr_3842 0.84 -0.7 4,579,670 - Psyr_3842 0.84 +0.9 4,579,715 - Psyr_3842 0.86 +1.9 4,580,316 - -0.6 4,580,450 + +0.8 4,580,560 + +0.6 4,580,560 + -0.6 4,580,573 + -0.6 4,580,573 + +0.3 4,580,574 - +1.0 4,580,574 - -0.2 4,580,574 - +1.6 4,580,574 - +0.4 4,580,584 + +0.1 4,580,584 + -1.5 4,580,584 + +0.1 4,580,584 + +4.0 4,580,584 + -0.9 4,580,584 + +0.0 4,580,584 + -0.0 4,580,584 + -0.3 4,580,585 - +1.0 4,580,585 - -0.6 4,580,585 - +2.8 4,580,585 - -0.2 4,580,585 - +0.4 4,580,585 - +0.7 4,580,585 - -0.4 4,580,585 - +0.5 4,580,586 + +1.4 4,580,586 + +0.3 4,580,586 + -0.3 4,580,586 + -0.5 4,580,587 - -0.7 4,580,587 - -1.2 4,580,595 + +0.5 4,580,595 + -0.9 4,580,595 + +2.0 4,580,595 + +0.2 4,580,595 + +0.4 4,580,596 - -0.9 4,580,596 - +0.0 4,580,596 - -0.0 4,580,638 - +1.2 4,580,647 + -1.0 4,580,647 + +0.3 4,580,648 - -0.3 4,580,670 + -0.3 4,580,670 + -2.0 4,580,670 + +0.4 4,580,671 - +0.5 4,580,700 + -1.2 4,580,700 + +0.2 4,580,700 + -0.8 4,580,700 + -0.6 4,580,700 + +0.2 4,580,701 - -0.5 4,580,701 - +0.5 4,580,713 + -0.5 4,580,714 - -0.2 4,580,714 - -0.4 4,580,782 + -1.3 4,580,890 + Psyr_3843 0.11 -0.3 4,580,890 + Psyr_3843 0.11 -0.3 4,580,890 + Psyr_3843 0.11 -0.7 4,580,891 - Psyr_3843 0.11 +0.2 4,580,891 - Psyr_3843 0.11 -0.7 4,580,891 - Psyr_3843 0.11 +0.2 4,580,961 + Psyr_3843 0.14 +1.0 4,580,962 - Psyr_3843 0.14 -0.7 4,580,962 - Psyr_3843 0.14 +0.7 4,580,962 - Psyr_3843 0.14 -0.5 4,581,071 + Psyr_3843 0.18 -0.4 4,581,110 + Psyr_3843 0.20 +1.6 4,581,110 + Psyr_3843 0.20 +0.2 4,581,110 + Psyr_3843 0.20 +0.0 4,581,110 + Psyr_3843 0.20 -0.0 4,581,111 - Psyr_3843 0.20 -0.7 4,581,111 - Psyr_3843 0.20 -0.5 4,581,111 - Psyr_3843 0.20 -0.4
Or see this region's nucleotide sequence