Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3794 and Psyr_3795 are separated by 118 nucleotides Psyr_3795 and Psyr_3796 are separated by 19 nucleotides Psyr_3796 and Psyr_3797 are separated by 88 nucleotides
Psyr_3794: Psyr_3794 - surface antigen (D15):Surface antigen variable number, at 4,510,450 to 4,512,822
_3794
Psyr_3795: Psyr_3795 - hypothetical protein, at 4,512,941 to 4,513,354
_3795
Psyr_3796: Psyr_3796 - transcriptional regulator, LysR family, at 4,513,374 to 4,514,273
_3796
Psyr_3797: Psyr_3797 - NAD(P)H dehydrogenase (quinone), at 4,514,362 to 4,515,162
_3797
Position (kb)
4513
4514
4515 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4512.377 kb on - strand, within Psyr_3794 at 4512.385 kb on + strand, within Psyr_3794 at 4512.385 kb on + strand, within Psyr_3794 at 4512.386 kb on - strand, within Psyr_3794 at 4512.386 kb on - strand, within Psyr_3794 at 4512.466 kb on + strand, within Psyr_3794 at 4512.467 kb on - strand, within Psyr_3794 at 4512.467 kb on - strand, within Psyr_3794 at 4512.467 kb on - strand, within Psyr_3794 at 4512.487 kb on + strand, within Psyr_3794 at 4512.487 kb on + strand, within Psyr_3794 at 4512.487 kb on + strand, within Psyr_3794 at 4512.487 kb on + strand, within Psyr_3794 at 4512.487 kb on + strand, within Psyr_3794 at 4512.487 kb on + strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.488 kb on - strand, within Psyr_3794 at 4512.550 kb on + strand, within Psyr_3794 at 4512.550 kb on + strand, within Psyr_3794 at 4512.550 kb on + strand, within Psyr_3794 at 4512.550 kb on + strand, within Psyr_3794 at 4512.550 kb on + strand, within Psyr_3794 at 4512.550 kb on + strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.551 kb on - strand, within Psyr_3794 at 4512.626 kb on - strand at 4512.834 kb on + strand at 4512.834 kb on + strand at 4512.866 kb on + strand at 4512.866 kb on + strand at 4512.866 kb on + strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.887 kb on + strand at 4512.887 kb on + strand at 4512.887 kb on + strand at 4512.887 kb on + strand at 4512.887 kb on + strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.917 kb on - strand at 4512.938 kb on + strand at 4512.938 kb on + strand at 4512.938 kb on + strand at 4512.938 kb on + strand at 4512.938 kb on + strand at 4512.938 kb on + strand at 4512.939 kb on - strand at 4512.939 kb on - strand at 4512.939 kb on - strand at 4512.939 kb on - strand at 4512.939 kb on - strand at 4512.939 kb on - strand at 4512.939 kb on - strand at 4513.185 kb on + strand, within Psyr_3795 at 4513.186 kb on - strand, within Psyr_3795 at 4513.186 kb on - strand, within Psyr_3795 at 4513.320 kb on + strand at 4513.321 kb on - strand at 4513.756 kb on + strand, within Psyr_3796 at 4513.756 kb on + strand, within Psyr_3796 at 4513.756 kb on + strand, within Psyr_3796 at 4514.253 kb on - strand at 4514.253 kb on - strand at 4514.369 kb on + strand at 4514.369 kb on + strand at 4514.369 kb on + strand at 4514.369 kb on + strand at 4514.369 kb on + strand at 4514.369 kb on + strand at 4514.370 kb on - strand at 4514.370 kb on - strand at 4514.370 kb on - strand at 4514.370 kb on - strand at 4514.370 kb on - strand at 4514.370 kb on - strand at 4514.370 kb on - strand at 4514.370 kb on - strand at 4514.373 kb on + strand at 4514.373 kb on + strand at 4514.373 kb on + strand at 4514.373 kb on + strand at 4514.373 kb on + strand at 4514.373 kb on + strand at 4514.373 kb on + strand at 4514.374 kb on - strand at 4514.374 kb on - strand at 4514.374 kb on - strand at 4514.374 kb on - strand at 4514.374 kb on - strand at 4514.374 kb on - strand at 4514.573 kb on + strand, within Psyr_3797 at 4514.574 kb on - strand, within Psyr_3797 at 4514.574 kb on - strand, within Psyr_3797 at 4514.645 kb on + strand, within Psyr_3797 at 4514.645 kb on + strand, within Psyr_3797 at 4514.645 kb on + strand, within Psyr_3797 at 4514.645 kb on + strand, within Psyr_3797 at 4514.645 kb on + strand, within Psyr_3797 at 4514.645 kb on + strand, within Psyr_3797 at 4514.646 kb on - strand, within Psyr_3797 at 4514.646 kb on - strand, within Psyr_3797 at 4514.646 kb on - strand, within Psyr_3797 at 4514.699 kb on + strand, within Psyr_3797 at 4514.700 kb on - strand, within Psyr_3797 at 4514.710 kb on + strand, within Psyr_3797 at 4514.710 kb on + strand, within Psyr_3797 at 4514.710 kb on + strand, within Psyr_3797 at 4514.710 kb on + strand, within Psyr_3797 at 4514.710 kb on + strand, within Psyr_3797 at 4514.710 kb on + strand, within Psyr_3797 at 4514.711 kb on - strand, within Psyr_3797 at 4514.909 kb on - strand, within Psyr_3797 at 4515.064 kb on + strand, within Psyr_3797 at 4515.161 kb on - strand at 4515.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 4,512,377 - Psyr_3794 0.81 +1.2 4,512,385 + Psyr_3794 0.82 -0.0 4,512,385 + Psyr_3794 0.82 +0.0 4,512,386 - Psyr_3794 0.82 -1.4 4,512,386 - Psyr_3794 0.82 +0.3 4,512,466 + Psyr_3794 0.85 -1.2 4,512,467 - Psyr_3794 0.85 +0.0 4,512,467 - Psyr_3794 0.85 -0.9 4,512,467 - Psyr_3794 0.85 +0.4 4,512,487 + Psyr_3794 0.86 -0.0 4,512,487 + Psyr_3794 0.86 -0.7 4,512,487 + Psyr_3794 0.86 +1.0 4,512,487 + Psyr_3794 0.86 +0.1 4,512,487 + Psyr_3794 0.86 +0.1 4,512,487 + Psyr_3794 0.86 +0.5 4,512,488 - Psyr_3794 0.86 +0.2 4,512,488 - Psyr_3794 0.86 +0.1 4,512,488 - Psyr_3794 0.86 +0.9 4,512,488 - Psyr_3794 0.86 -0.2 4,512,488 - Psyr_3794 0.86 -0.0 4,512,488 - Psyr_3794 0.86 -1.0 4,512,488 - Psyr_3794 0.86 -0.1 4,512,488 - Psyr_3794 0.86 +3.0 4,512,488 - Psyr_3794 0.86 -1.0 4,512,488 - Psyr_3794 0.86 -0.1 4,512,488 - Psyr_3794 0.86 +1.1 4,512,488 - Psyr_3794 0.86 -0.5 4,512,550 + Psyr_3794 0.88 +1.4 4,512,550 + Psyr_3794 0.88 +0.7 4,512,550 + Psyr_3794 0.88 +1.0 4,512,550 + Psyr_3794 0.88 +0.4 4,512,550 + Psyr_3794 0.88 +0.8 4,512,550 + Psyr_3794 0.88 -0.7 4,512,551 - Psyr_3794 0.89 -1.4 4,512,551 - Psyr_3794 0.89 +1.0 4,512,551 - Psyr_3794 0.89 +1.4 4,512,551 - Psyr_3794 0.89 +0.5 4,512,551 - Psyr_3794 0.89 -0.1 4,512,551 - Psyr_3794 0.89 +1.1 4,512,551 - Psyr_3794 0.89 -0.3 4,512,551 - Psyr_3794 0.89 -0.7 4,512,626 - -0.0 4,512,834 + +0.4 4,512,834 + -1.5 4,512,866 + +0.1 4,512,866 + -1.9 4,512,866 + +0.1 4,512,867 - +1.3 4,512,867 - +3.3 4,512,867 - +0.5 4,512,887 + -1.2 4,512,887 + -1.4 4,512,887 + -1.2 4,512,887 + +0.9 4,512,887 + -2.3 4,512,888 - +0.6 4,512,888 - +0.3 4,512,888 - -0.6 4,512,888 - -0.4 4,512,888 - +2.0 4,512,888 - -0.0 4,512,917 - +0.4 4,512,938 + -0.8 4,512,938 + +0.0 4,512,938 + -0.2 4,512,938 + +0.5 4,512,938 + -0.6 4,512,938 + -0.8 4,512,939 - +0.5 4,512,939 - -0.5 4,512,939 - +2.8 4,512,939 - +0.4 4,512,939 - +2.0 4,512,939 - +2.1 4,512,939 - +0.4 4,513,185 + Psyr_3795 0.59 -0.3 4,513,186 - Psyr_3795 0.59 +0.7 4,513,186 - Psyr_3795 0.59 -1.0 4,513,320 + -0.7 4,513,321 - +0.5 4,513,756 + Psyr_3796 0.42 -1.0 4,513,756 + Psyr_3796 0.42 -0.6 4,513,756 + Psyr_3796 0.42 -0.8 4,514,253 - +0.2 4,514,253 - +0.1 4,514,369 + -0.1 4,514,369 + +1.5 4,514,369 + -0.3 4,514,369 + -0.8 4,514,369 + +0.4 4,514,369 + +0.5 4,514,370 - +0.3 4,514,370 - +1.0 4,514,370 - +0.2 4,514,370 - +0.0 4,514,370 - +0.5 4,514,370 - +0.2 4,514,370 - +2.9 4,514,370 - -0.5 4,514,373 + -0.2 4,514,373 + -0.5 4,514,373 + -1.4 4,514,373 + +0.5 4,514,373 + -0.5 4,514,373 + -0.6 4,514,373 + +0.7 4,514,374 - -1.2 4,514,374 - -0.0 4,514,374 - +2.0 4,514,374 - +0.3 4,514,374 - +1.2 4,514,374 - +0.1 4,514,573 + Psyr_3797 0.26 +0.2 4,514,574 - Psyr_3797 0.26 +1.7 4,514,574 - Psyr_3797 0.26 -1.2 4,514,645 + Psyr_3797 0.35 -1.0 4,514,645 + Psyr_3797 0.35 -2.1 4,514,645 + Psyr_3797 0.35 +2.7 4,514,645 + Psyr_3797 0.35 +0.5 4,514,645 + Psyr_3797 0.35 +0.5 4,514,645 + Psyr_3797 0.35 +1.7 4,514,646 - Psyr_3797 0.35 -0.0 4,514,646 - Psyr_3797 0.35 -1.7 4,514,646 - Psyr_3797 0.35 -1.6 4,514,699 + Psyr_3797 0.42 +1.5 4,514,700 - Psyr_3797 0.42 +1.5 4,514,710 + Psyr_3797 0.43 +0.8 4,514,710 + Psyr_3797 0.43 +0.2 4,514,710 + Psyr_3797 0.43 -0.2 4,514,710 + Psyr_3797 0.43 +0.1 4,514,710 + Psyr_3797 0.43 +0.1 4,514,710 + Psyr_3797 0.43 -0.1 4,514,711 - Psyr_3797 0.44 +0.7 4,514,909 - Psyr_3797 0.68 +0.4 4,515,064 + Psyr_3797 0.88 +1.1 4,515,161 - +2.2 4,515,207 + -0.3
Or see this region's nucleotide sequence