Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3670

Experiment: KB with Avocatin B 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3669 and Psyr_3670 are separated by 290 nucleotidesPsyr_3670 and Psyr_3671 are separated by 177 nucleotides Psyr_3669: Psyr_3669 - Membrane protein involved in aromatic hydrocarbon degradation, at 4,355,493 to 4,356,776 _3669 Psyr_3670: Psyr_3670 - Glutathione peroxidase, at 4,357,067 to 4,357,621 _3670 Psyr_3671: Psyr_3671 - Major facilitator superfamily, at 4,357,799 to 4,359,007 _3671 Position (kb) 4357 4358Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4356.171 kb on + strand, within Psyr_3669at 4356.171 kb on + strand, within Psyr_3669at 4356.252 kb on + strand, within Psyr_3669at 4356.252 kb on + strand, within Psyr_3669at 4356.252 kb on + strand, within Psyr_3669at 4356.252 kb on + strand, within Psyr_3669at 4356.252 kb on + strand, within Psyr_3669at 4356.253 kb on - strand, within Psyr_3669at 4356.333 kb on + strand, within Psyr_3669at 4356.406 kb on + strand, within Psyr_3669at 4356.492 kb on + strand, within Psyr_3669at 4356.493 kb on - strand, within Psyr_3669at 4356.493 kb on - strand, within Psyr_3669at 4356.660 kb on + strandat 4356.660 kb on + strandat 4356.714 kb on + strandat 4356.765 kb on + strandat 4356.765 kb on + strandat 4356.766 kb on - strandat 4356.777 kb on + strandat 4356.833 kb on - strandat 4356.882 kb on + strandat 4356.882 kb on + strandat 4356.882 kb on + strandat 4356.882 kb on + strandat 4356.883 kb on - strandat 4356.904 kb on - strandat 4356.927 kb on + strandat 4356.928 kb on - strandat 4356.928 kb on - strandat 4356.936 kb on - strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.988 kb on - strandat 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strandat 4357.177 kb on - strand, within Psyr_3670at 4357.177 kb on - strand, within Psyr_3670at 4357.177 kb on - strand, within Psyr_3670at 4357.182 kb on + strandat 4357.183 kb on - strand, within Psyr_3670at 4357.183 kb on - strand, within Psyr_3670at 4357.220 kb on + strand, within Psyr_3670at 4357.290 kb on + strand, within Psyr_3670at 4357.290 kb on + strand, within Psyr_3670at 4357.290 kb on + strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.300 kb on - strand, within Psyr_3670at 4357.450 kb on + strand, within Psyr_3670at 4357.450 kb on + strand, within Psyr_3670at 4357.450 kb on + strand, within Psyr_3670at 4357.451 kb on - strand, within Psyr_3670at 4357.911 kb on + strandat 4357.911 kb on + strandat 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.967 kb on + strand, within Psyr_3671at 4358.097 kb on + strand, within Psyr_3671at 4358.098 kb on - strand, within Psyr_3671at 4358.136 kb on - strandat 4358.136 kb on - strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.145 kb on - strand, within Psyr_3671at 4358.160 kb on + strand, within Psyr_3671at 4358.160 kb on + strand, within Psyr_3671at 4358.217 kb on + strand, within Psyr_3671at 4358.217 kb on + strand, within Psyr_3671at 4358.218 kb on - strand, within Psyr_3671at 4358.261 kb on - strand, within Psyr_3671at 4358.261 kb on - strand, within Psyr_3671at 4358.298 kb on + strand, within Psyr_3671at 4358.298 kb on + strand, within Psyr_3671at 4358.433 kb on - strand, within Psyr_3671at 4358.542 kb on + strand, within Psyr_3671at 4358.543 kb on - strand, within Psyr_3671at 4358.602 kb on + strand, within Psyr_3671

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
remove
4,356,171 + Psyr_3669 0.53 +4.1
4,356,171 + Psyr_3669 0.53 +3.8
4,356,252 + Psyr_3669 0.59 +4.1
4,356,252 + Psyr_3669 0.59 +5.9
4,356,252 + Psyr_3669 0.59 +4.6
4,356,252 + Psyr_3669 0.59 +4.9
4,356,252 + Psyr_3669 0.59 +4.4
4,356,253 - Psyr_3669 0.59 +5.0
4,356,333 + Psyr_3669 0.65 +5.8
4,356,406 + Psyr_3669 0.71 +4.8
4,356,492 + Psyr_3669 0.78 +4.5
4,356,493 - Psyr_3669 0.78 +4.9
4,356,493 - Psyr_3669 0.78 +4.5
4,356,660 + +6.0
4,356,660 + +4.4
4,356,714 + +4.6
4,356,765 + +4.2
4,356,765 + +4.7
4,356,766 - +3.8
4,356,777 + +3.9
4,356,833 - +0.6
4,356,882 + +0.8
4,356,882 + +2.5
4,356,882 + +0.3
4,356,882 + +1.5
4,356,883 - +1.8
4,356,904 - +1.2
4,356,927 + +0.5
4,356,928 - +0.9
4,356,928 - +1.3
4,356,936 - +1.6
4,356,987 + +2.2
4,356,987 + +1.3
4,356,987 + -0.7
4,356,987 + +2.1
4,356,987 + -0.0
4,356,988 - +1.1
4,357,176 + Psyr_3670 0.20 -0.2
4,357,176 + Psyr_3670 0.20 +2.2
4,357,176 + Psyr_3670 0.20 +1.1
4,357,176 + Psyr_3670 0.20 -0.0
4,357,176 + +2.9
4,357,177 - Psyr_3670 0.20 +0.5
4,357,177 - Psyr_3670 0.20 +1.9
4,357,177 - Psyr_3670 0.20 +1.0
4,357,182 + -0.1
4,357,183 - Psyr_3670 0.21 +0.7
4,357,183 - Psyr_3670 0.21 +0.6
4,357,220 + Psyr_3670 0.28 -0.3
4,357,290 + Psyr_3670 0.40 +0.1
4,357,290 + Psyr_3670 0.40 +1.2
4,357,290 + Psyr_3670 0.40 +0.7
4,357,291 - Psyr_3670 0.40 -0.5
4,357,291 - Psyr_3670 0.40 +1.3
4,357,291 - Psyr_3670 0.40 +4.5
4,357,291 - Psyr_3670 0.40 +2.1
4,357,299 + Psyr_3670 0.42 +0.6
4,357,299 + Psyr_3670 0.42 +0.6
4,357,299 + Psyr_3670 0.42 -1.1
4,357,299 + Psyr_3670 0.42 -0.8
4,357,300 - Psyr_3670 0.42 -1.2
4,357,450 + Psyr_3670 0.69 +0.2
4,357,450 + Psyr_3670 0.69 +1.6
4,357,450 + Psyr_3670 0.69 -1.1
4,357,451 - Psyr_3670 0.69 -0.5
4,357,911 + +0.4
4,357,911 + +0.6
4,357,929 + Psyr_3671 0.11 +1.1
4,357,929 + Psyr_3671 0.11 -0.1
4,357,929 + Psyr_3671 0.11 -0.4
4,357,929 + Psyr_3671 0.11 +0.5
4,357,929 + Psyr_3671 0.11 -0.9
4,357,929 + Psyr_3671 0.11 +0.9
4,357,929 + Psyr_3671 0.11 +0.2
4,357,930 - Psyr_3671 0.11 +1.1
4,357,930 - Psyr_3671 0.11 -2.6
4,357,930 - Psyr_3671 0.11 +0.4
4,357,930 - Psyr_3671 0.11 +1.0
4,357,930 - Psyr_3671 0.11 -0.3
4,357,930 - Psyr_3671 0.11 -1.0
4,357,931 + Psyr_3671 0.11 +0.2
4,357,931 + Psyr_3671 0.11 +0.3
4,357,931 + Psyr_3671 0.11 +1.9
4,357,931 + Psyr_3671 0.11 -0.0
4,357,931 + Psyr_3671 0.11 +0.8
4,357,931 + Psyr_3671 0.11 +0.2
4,357,931 + Psyr_3671 0.11 +1.7
4,357,932 - Psyr_3671 0.11 +1.2
4,357,932 - Psyr_3671 0.11 +0.5
4,357,932 - Psyr_3671 0.11 +1.2
4,357,932 - Psyr_3671 0.11 -0.3
4,357,932 - Psyr_3671 0.11 +2.1
4,357,967 + Psyr_3671 0.14 +0.9
4,358,097 + Psyr_3671 0.25 -0.4
4,358,098 - Psyr_3671 0.25 -0.7
4,358,136 - -0.5
4,358,136 - Psyr_3671 0.28 +1.7
4,358,141 + Psyr_3671 0.28 +1.8
4,358,141 + Psyr_3671 0.28 -0.4
4,358,141 + Psyr_3671 0.28 +0.5
4,358,142 - Psyr_3671 0.28 +1.6
4,358,142 - Psyr_3671 0.28 +2.3
4,358,142 - Psyr_3671 0.28 +0.8
4,358,142 - Psyr_3671 0.28 -0.3
4,358,145 - Psyr_3671 0.29 -0.7
4,358,160 + Psyr_3671 0.30 -0.3
4,358,160 + Psyr_3671 0.30 +0.6
4,358,217 + Psyr_3671 0.35 +1.2
4,358,217 + Psyr_3671 0.35 -0.4
4,358,218 - Psyr_3671 0.35 +0.2
4,358,261 - Psyr_3671 0.38 +0.8
4,358,261 - Psyr_3671 0.38 -0.2
4,358,298 + Psyr_3671 0.41 +1.5
4,358,298 + Psyr_3671 0.41 +0.1
4,358,433 - Psyr_3671 0.52 -0.2
4,358,542 + Psyr_3671 0.61 +0.5
4,358,543 - Psyr_3671 0.62 -0.4
4,358,602 + Psyr_3671 0.66 +0.4

Or see this region's nucleotide sequence