Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3667 and Psyr_3668 are separated by 481 nucleotides Psyr_3668 and Psyr_3669 are separated by 239 nucleotides Psyr_3669 and Psyr_3670 are separated by 290 nucleotides
Psyr_3667: Psyr_3667 - conserved hypothetical protein, at 4,354,248 to 4,354,553
_3667
Psyr_3668: Psyr_3668 - conserved domain protein, at 4,355,035 to 4,355,253
_3668
Psyr_3669: Psyr_3669 - Membrane protein involved in aromatic hydrocarbon degradation, at 4,355,493 to 4,356,776
_3669
Psyr_3670: Psyr_3670 - Glutathione peroxidase, at 4,357,067 to 4,357,621
_3670
Position (kb) 4355
4356
4357 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 4354.523 kb on - strand at 4354.596 kb on - strand at 4354.596 kb on - strand at 4354.598 kb on + strand at 4354.824 kb on - strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.863 kb on - strand at 4354.863 kb on - strand at 4354.887 kb on + strand at 4354.954 kb on + strand at 4354.954 kb on + strand at 4354.987 kb on + strand at 4355.034 kb on + strand at 4355.034 kb on + strand at 4355.035 kb on - strand at 4355.035 kb on - strand at 4355.041 kb on - strand at 4355.192 kb on - strand, within Psyr_3668 at 4355.310 kb on - strand at 4355.320 kb on + strand at 4355.321 kb on - strand at 4355.321 kb on - strand at 4355.322 kb on + strand at 4355.335 kb on - strand at 4355.377 kb on + strand at 4355.399 kb on + strand at 4355.408 kb on - strand at 4355.408 kb on - strand at 4355.413 kb on + strand at 4355.413 kb on + strand at 4355.433 kb on - strand at 4355.457 kb on + strand at 4355.458 kb on - strand at 4355.488 kb on + strand at 4355.488 kb on + strand at 4355.488 kb on + strand at 4355.488 kb on + strand at 4355.488 kb on + strand at 4355.489 kb on - strand at 4355.489 kb on - strand at 4355.492 kb on - strand at 4355.500 kb on + strand at 4355.501 kb on - strand at 4355.659 kb on + strand, within Psyr_3669 at 4355.678 kb on + strand, within Psyr_3669 at 4355.678 kb on + strand, within Psyr_3669 at 4355.787 kb on - strand, within Psyr_3669 at 4355.806 kb on + strand, within Psyr_3669 at 4355.817 kb on + strand, within Psyr_3669 at 4355.817 kb on + strand, within Psyr_3669 at 4355.818 kb on - strand, within Psyr_3669 at 4355.818 kb on - strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.821 kb on - strand, within Psyr_3669 at 4355.821 kb on - strand, within Psyr_3669 at 4355.821 kb on - strand, within Psyr_3669 at 4355.821 kb on - strand, within Psyr_3669 at 4355.821 kb on - strand, within Psyr_3669 at 4355.865 kb on + strand, within Psyr_3669 at 4355.865 kb on + strand, within Psyr_3669 at 4355.865 kb on + strand, within Psyr_3669 at 4355.865 kb on + strand, within Psyr_3669 at 4355.866 kb on - strand, within Psyr_3669 at 4355.866 kb on - strand, within Psyr_3669 at 4355.869 kb on + strand, within Psyr_3669 at 4355.870 kb on - strand, within Psyr_3669 at 4355.970 kb on + strand, within Psyr_3669 at 4355.970 kb on + strand, within Psyr_3669 at 4355.971 kb on - strand, within Psyr_3669 at 4356.171 kb on + strand, within Psyr_3669 at 4356.171 kb on + strand, within Psyr_3669 at 4356.252 kb on + strand, within Psyr_3669 at 4356.252 kb on + strand, within Psyr_3669 at 4356.252 kb on + strand, within Psyr_3669 at 4356.252 kb on + strand, within Psyr_3669 at 4356.252 kb on + strand, within Psyr_3669 at 4356.253 kb on - strand, within Psyr_3669 at 4356.333 kb on + strand, within Psyr_3669 at 4356.406 kb on + strand, within Psyr_3669 at 4356.492 kb on + strand, within Psyr_3669 at 4356.493 kb on - strand, within Psyr_3669 at 4356.493 kb on - strand, within Psyr_3669 at 4356.660 kb on + strand at 4356.660 kb on + strand at 4356.714 kb on + strand at 4356.765 kb on + strand at 4356.765 kb on + strand at 4356.766 kb on - strand at 4356.777 kb on + strand at 4356.833 kb on - strand at 4356.882 kb on + strand at 4356.882 kb on + strand at 4356.882 kb on + strand at 4356.882 kb on + strand at 4356.883 kb on - strand at 4356.904 kb on - strand at 4356.927 kb on + strand at 4356.928 kb on - strand at 4356.928 kb on - strand at 4356.936 kb on - strand at 4356.987 kb on + strand at 4356.987 kb on + strand at 4356.987 kb on + strand at 4356.987 kb on + strand at 4356.987 kb on + strand at 4356.988 kb on - strand at 4357.176 kb on + strand, within Psyr_3670 at 4357.176 kb on + strand, within Psyr_3670 at 4357.176 kb on + strand, within Psyr_3670 at 4357.176 kb on + strand, within Psyr_3670 at 4357.176 kb on + strand at 4357.177 kb on - strand, within Psyr_3670 at 4357.177 kb on - strand, within Psyr_3670 at 4357.177 kb on - strand, within Psyr_3670 at 4357.182 kb on + strand at 4357.183 kb on - strand, within Psyr_3670 at 4357.183 kb on - strand, within Psyr_3670 at 4357.220 kb on + strand, within Psyr_3670 at 4357.290 kb on + strand, within Psyr_3670 at 4357.290 kb on + strand, within Psyr_3670 at 4357.290 kb on + strand, within Psyr_3670 at 4357.291 kb on - strand, within Psyr_3670 at 4357.291 kb on - strand, within Psyr_3670 at 4357.291 kb on - strand, within Psyr_3670 at 4357.291 kb on - strand, within Psyr_3670 at 4357.299 kb on + strand, within Psyr_3670 at 4357.299 kb on + strand, within Psyr_3670 at 4357.299 kb on + strand, within Psyr_3670 at 4357.299 kb on + strand, within Psyr_3670 at 4357.300 kb on - strand, within Psyr_3670 at 4357.450 kb on + strand, within Psyr_3670 at 4357.450 kb on + strand, within Psyr_3670 at 4357.450 kb on + strand, within Psyr_3670 at 4357.451 kb on - strand, within Psyr_3670
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 4,354,523 - +0.5 4,354,596 - +1.1 4,354,596 - +2.8 4,354,598 + -0.1 4,354,824 - +0.3 4,354,858 + +2.7 4,354,858 + +1.9 4,354,858 + +0.8 4,354,858 + +0.6 4,354,858 + +2.1 4,354,858 + +0.1 4,354,859 - +0.5 4,354,859 - +1.1 4,354,859 - +1.6 4,354,859 - +0.7 4,354,859 - +3.2 4,354,859 - +2.1 4,354,862 + +1.5 4,354,862 + +0.6 4,354,862 + +0.9 4,354,863 - +0.3 4,354,863 - +0.3 4,354,887 + +1.0 4,354,954 + +0.9 4,354,954 + +0.7 4,354,987 + +0.0 4,355,034 + +2.2 4,355,034 + +0.6 4,355,035 - +5.6 4,355,035 - +2.8 4,355,041 - +4.0 4,355,192 - Psyr_3668 0.72 +2.2 4,355,310 - +4.3 4,355,320 + -0.6 4,355,321 - +3.4 4,355,321 - +2.8 4,355,322 + -1.2 4,355,335 - +3.5 4,355,377 + +0.3 4,355,399 + -0.1 4,355,408 - +5.9 4,355,408 - +4.7 4,355,413 + +0.7 4,355,413 + -0.5 4,355,433 - +5.2 4,355,457 + -1.2 4,355,458 - +5.3 4,355,488 + +3.6 4,355,488 + +2.6 4,355,488 + +3.5 4,355,488 + +4.2 4,355,488 + +2.8 4,355,489 - +5.2 4,355,489 - +3.6 4,355,492 - +5.0 4,355,500 + +5.1 4,355,501 - +4.4 4,355,659 + Psyr_3669 0.13 +3.2 4,355,678 + Psyr_3669 0.14 +4.0 4,355,678 + Psyr_3669 0.14 +4.5 4,355,787 - Psyr_3669 0.23 +2.8 4,355,806 + Psyr_3669 0.24 +4.3 4,355,817 + Psyr_3669 0.25 +5.4 4,355,817 + Psyr_3669 0.25 +4.3 4,355,818 - Psyr_3669 0.25 +5.2 4,355,818 - Psyr_3669 0.25 +5.5 4,355,820 + Psyr_3669 0.25 +5.0 4,355,820 + Psyr_3669 0.25 +2.9 4,355,820 + Psyr_3669 0.25 +3.8 4,355,820 + Psyr_3669 0.25 +5.6 4,355,820 + Psyr_3669 0.25 +4.1 4,355,821 - Psyr_3669 0.26 +4.7 4,355,821 - Psyr_3669 0.26 +4.5 4,355,821 - Psyr_3669 0.26 +4.6 4,355,821 - Psyr_3669 0.26 +6.8 4,355,821 - Psyr_3669 0.26 +4.3 4,355,865 + Psyr_3669 0.29 +4.1 4,355,865 + Psyr_3669 0.29 +4.4 4,355,865 + Psyr_3669 0.29 +2.7 4,355,865 + Psyr_3669 0.29 +5.8 4,355,866 - Psyr_3669 0.29 +5.3 4,355,866 - Psyr_3669 0.29 +4.2 4,355,869 + Psyr_3669 0.29 +4.1 4,355,870 - Psyr_3669 0.29 +4.4 4,355,970 + Psyr_3669 0.37 +3.9 4,355,970 + Psyr_3669 0.37 +4.5 4,355,971 - Psyr_3669 0.37 +4.2 4,356,171 + Psyr_3669 0.53 +4.1 4,356,171 + Psyr_3669 0.53 +3.8 4,356,252 + Psyr_3669 0.59 +4.1 4,356,252 + Psyr_3669 0.59 +5.9 4,356,252 + Psyr_3669 0.59 +4.6 4,356,252 + Psyr_3669 0.59 +4.9 4,356,252 + Psyr_3669 0.59 +4.4 4,356,253 - Psyr_3669 0.59 +5.0 4,356,333 + Psyr_3669 0.65 +5.8 4,356,406 + Psyr_3669 0.71 +4.8 4,356,492 + Psyr_3669 0.78 +4.5 4,356,493 - Psyr_3669 0.78 +4.9 4,356,493 - Psyr_3669 0.78 +4.5 4,356,660 + +6.0 4,356,660 + +4.4 4,356,714 + +4.6 4,356,765 + +4.2 4,356,765 + +4.7 4,356,766 - +3.8 4,356,777 + +3.9 4,356,833 - +0.6 4,356,882 + +0.8 4,356,882 + +2.5 4,356,882 + +0.3 4,356,882 + +1.5 4,356,883 - +1.8 4,356,904 - +1.2 4,356,927 + +0.5 4,356,928 - +0.9 4,356,928 - +1.3 4,356,936 - +1.6 4,356,987 + +2.2 4,356,987 + +1.3 4,356,987 + -0.7 4,356,987 + +2.1 4,356,987 + -0.0 4,356,988 - +1.1 4,357,176 + Psyr_3670 0.20 -0.2 4,357,176 + Psyr_3670 0.20 +2.2 4,357,176 + Psyr_3670 0.20 +1.1 4,357,176 + Psyr_3670 0.20 -0.0 4,357,176 + +2.9 4,357,177 - Psyr_3670 0.20 +0.5 4,357,177 - Psyr_3670 0.20 +1.9 4,357,177 - Psyr_3670 0.20 +1.0 4,357,182 + -0.1 4,357,183 - Psyr_3670 0.21 +0.7 4,357,183 - Psyr_3670 0.21 +0.6 4,357,220 + Psyr_3670 0.28 -0.3 4,357,290 + Psyr_3670 0.40 +0.1 4,357,290 + Psyr_3670 0.40 +1.2 4,357,290 + Psyr_3670 0.40 +0.7 4,357,291 - Psyr_3670 0.40 -0.5 4,357,291 - Psyr_3670 0.40 +1.3 4,357,291 - Psyr_3670 0.40 +4.5 4,357,291 - Psyr_3670 0.40 +2.1 4,357,299 + Psyr_3670 0.42 +0.6 4,357,299 + Psyr_3670 0.42 +0.6 4,357,299 + Psyr_3670 0.42 -1.1 4,357,299 + Psyr_3670 0.42 -0.8 4,357,300 - Psyr_3670 0.42 -1.2 4,357,450 + Psyr_3670 0.69 +0.2 4,357,450 + Psyr_3670 0.69 +1.6 4,357,450 + Psyr_3670 0.69 -1.1 4,357,451 - Psyr_3670 0.69 -0.5
Or see this region's nucleotide sequence