Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3624 and Psyr_3625 overlap by 11 nucleotides Psyr_3625 and Psyr_3626 are separated by 204 nucleotides Psyr_3626 and Psyr_3627 are separated by 190 nucleotides Psyr_3627 and Psyr_3628 are separated by 102 nucleotides
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Psyr_3626: Psyr_3626 - transcriptional regulator, MarR family, at 4,309,580 to 4,310,053
_3626
Psyr_3627: Psyr_3627 - OsmC-like protein, at 4,310,244 to 4,310,663
_3627
Psyr_3628: Psyr_3628 - translation elongation factor P (EF-P), at 4,310,766 to 4,311,335
_3628
Position (kb) 4309
4310
4311 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4308.628 kb on + strand at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.174 kb on + strand, within Psyr_3625 at 4309.203 kb on + strand, within Psyr_3625 at 4309.423 kb on + strand at 4309.517 kb on - strand at 4309.517 kb on - strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.543 kb on + strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.544 kb on - strand at 4309.548 kb on + strand at 4309.549 kb on - strand at 4309.579 kb on + strand at 4309.580 kb on - strand at 4309.664 kb on + strand, within Psyr_3626 at 4309.665 kb on - strand, within Psyr_3626 at 4309.665 kb on - strand, within Psyr_3626 at 4309.694 kb on + strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.727 kb on + strand, within Psyr_3626 at 4309.728 kb on - strand, within Psyr_3626 at 4309.736 kb on + strand, within Psyr_3626 at 4309.950 kb on + strand, within Psyr_3626 at 4310.172 kb on + strand at 4310.256 kb on + strand at 4310.256 kb on + strand at 4310.404 kb on - strand, within Psyr_3627 at 4310.491 kb on + strand, within Psyr_3627 at 4310.491 kb on + strand, within Psyr_3627 at 4310.610 kb on + strand, within Psyr_3627 at 4310.653 kb on + strand at 4310.654 kb on - strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.767 kb on + strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand at 4310.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 4,308,628 + -0.2 4,308,816 + Psyr_3625 0.23 -0.3 4,308,816 + Psyr_3625 0.23 +0.8 4,308,816 + Psyr_3625 0.23 +0.1 4,308,816 + Psyr_3625 0.23 +0.9 4,308,816 + Psyr_3625 0.23 -1.3 4,308,817 - Psyr_3625 0.24 -0.1 4,308,817 - Psyr_3625 0.24 -0.7 4,309,032 + Psyr_3625 0.53 +0.8 4,309,032 + Psyr_3625 0.53 -1.4 4,309,032 + Psyr_3625 0.53 +0.2 4,309,032 + Psyr_3625 0.53 +0.3 4,309,033 - Psyr_3625 0.53 -1.3 4,309,033 - Psyr_3625 0.53 -0.7 4,309,033 - Psyr_3625 0.53 +2.5 4,309,033 - Psyr_3625 0.53 +0.8 4,309,174 + Psyr_3625 0.72 +2.0 4,309,203 + Psyr_3625 0.76 +2.5 4,309,423 + +0.7 4,309,517 - +1.0 4,309,517 - +0.0 4,309,543 + -0.7 4,309,543 + +0.2 4,309,543 + +0.0 4,309,544 - -0.4 4,309,544 - +0.4 4,309,544 - +0.2 4,309,548 + +0.5 4,309,549 - -0.4 4,309,579 + +0.4 4,309,580 - -0.3 4,309,664 + Psyr_3626 0.18 -0.3 4,309,665 - Psyr_3626 0.18 -2.4 4,309,665 - Psyr_3626 0.18 -2.0 4,309,694 + Psyr_3626 0.24 -2.3 4,309,695 - Psyr_3626 0.24 -1.3 4,309,695 - Psyr_3626 0.24 -0.9 4,309,727 + Psyr_3626 0.31 -0.8 4,309,728 - Psyr_3626 0.31 +0.1 4,309,736 + Psyr_3626 0.33 +1.0 4,309,950 + Psyr_3626 0.78 -1.0 4,310,172 + -0.1 4,310,256 + +0.1 4,310,256 + -0.0 4,310,404 - Psyr_3627 0.38 -0.2 4,310,491 + Psyr_3627 0.59 -0.0 4,310,491 + Psyr_3627 0.59 -1.1 4,310,610 + Psyr_3627 0.87 -0.5 4,310,653 + +0.4 4,310,654 - -0.7 4,310,767 + +0.2 4,310,767 + -0.3 4,310,767 + -1.4 4,310,767 + +0.1 4,310,767 + -0.1 4,310,767 + +0.9 4,310,767 + -0.4 4,310,767 + +3.7 4,310,768 - -1.9 4,310,768 - +0.4 4,310,768 - +2.2 4,310,768 - +1.9 4,310,768 - -1.3 4,310,768 - +0.9 4,310,768 - -1.1 4,310,768 - +0.0
Or see this region's nucleotide sequence