Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3533

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3532 and Psyr_3533 are separated by 1 nucleotidesPsyr_3533 and Psyr_3534 are separated by 162 nucleotides Psyr_3532: Psyr_3532 - PAS, at 4,209,228 to 4,211,303 _3532 Psyr_3533: Psyr_3533 - conserved hypothetical protein, at 4,211,305 to 4,211,628 _3533 Psyr_3534: Psyr_3534 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 4,211,791 to 4,213,680 _3534 Position (kb) 4211 4212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4210.441 kb on + strand, within Psyr_3532at 4210.442 kb on - strand, within Psyr_3532at 4210.518 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.762 kb on - strand, within Psyr_3532at 4210.829 kb on - strand, within Psyr_3532at 4210.829 kb on - strand, within Psyr_3532at 4210.829 kb on - strand, within Psyr_3532at 4210.934 kb on - strand, within Psyr_3532at 4210.989 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.074 kb on + strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strandat 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.075 kb on - strand, within Psyr_3532at 4211.332 kb on + strandat 4211.332 kb on + strandat 4211.333 kb on - strandat 4211.599 kb on + strandat 4211.600 kb on - strandat 4211.600 kb on - strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.684 kb on - strandat 4211.684 kb on - strandat 4211.684 kb on - strandat 4211.684 kb on - strandat 4211.684 kb on - strandat 4211.686 kb on - strandat 4211.704 kb on - strandat 4211.704 kb on - strandat 4211.746 kb on - strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.749 kb on + strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.750 kb on - strandat 4211.775 kb on - strandat 4211.817 kb on + strandat 4211.865 kb on - strandat 4211.875 kb on + strandat 4211.875 kb on + strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.876 kb on - strandat 4211.885 kb on - strandat 4211.885 kb on - strandat 4211.964 kb on + strandat 4212.091 kb on + strand, within Psyr_3534at 4212.091 kb on + strand, within Psyr_3534at 4212.091 kb on + strand, within Psyr_3534at 4212.092 kb on - strand, within Psyr_3534at 4212.175 kb on + strand, within Psyr_3534at 4212.175 kb on + strand, within Psyr_3534at 4212.175 kb on + strand, within Psyr_3534at 4212.296 kb on + strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.297 kb on - strand, within Psyr_3534at 4212.569 kb on + strand, within Psyr_3534at 4212.570 kb on - strand, within Psyr_3534

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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4,210,441 + Psyr_3532 0.58 -1.4
4,210,442 - Psyr_3532 0.58 -1.1
4,210,518 - Psyr_3532 0.62 +0.2
4,210,762 - Psyr_3532 0.74 -0.5
4,210,762 - Psyr_3532 0.74 +1.8
4,210,762 - Psyr_3532 0.74 +0.4
4,210,762 - Psyr_3532 0.74 -0.4
4,210,762 - Psyr_3532 0.74 +0.1
4,210,762 - Psyr_3532 0.74 -0.6
4,210,829 - Psyr_3532 0.77 -1.7
4,210,829 - Psyr_3532 0.77 -0.5
4,210,829 - Psyr_3532 0.77 +0.7
4,210,934 - Psyr_3532 0.82 +1.4
4,210,989 + Psyr_3532 0.85 -0.7
4,211,074 + Psyr_3532 0.89 -0.9
4,211,074 + Psyr_3532 0.89 -0.1
4,211,074 + Psyr_3532 0.89 -1.0
4,211,075 - Psyr_3532 0.89 -0.1
4,211,075 - Psyr_3532 0.89 -0.2
4,211,075 - Psyr_3532 0.89 -0.1
4,211,075 - Psyr_3532 0.89 +0.8
4,211,075 - Psyr_3532 0.89 -0.2
4,211,075 - Psyr_3532 0.89 -1.0
4,211,075 - Psyr_3532 0.89 -0.6
4,211,075 - Psyr_3532 0.89 +1.1
4,211,075 - Psyr_3532 0.89 -0.6
4,211,075 - +0.8
4,211,075 - Psyr_3532 0.89 +0.1
4,211,075 - Psyr_3532 0.89 +1.2
4,211,075 - Psyr_3532 0.89 +0.2
4,211,332 + +0.4
4,211,332 + +0.2
4,211,333 - -0.1
4,211,599 + +0.0
4,211,600 - -0.0
4,211,600 - -0.2
4,211,683 + +0.4
4,211,683 + +0.4
4,211,683 + +0.6
4,211,683 + +1.8
4,211,683 + -1.6
4,211,683 + -1.1
4,211,683 + -0.7
4,211,683 + +1.8
4,211,683 + +0.0
4,211,684 - +0.8
4,211,684 - +2.4
4,211,684 - +0.0
4,211,684 - +0.9
4,211,684 - +0.4
4,211,686 - -1.0
4,211,704 - +0.6
4,211,704 - +1.3
4,211,746 - +0.2
4,211,749 + +2.0
4,211,749 + +0.8
4,211,749 + +0.4
4,211,749 + -0.5
4,211,749 + -0.2
4,211,749 + -0.3
4,211,750 - +1.1
4,211,750 - +0.8
4,211,750 - -0.4
4,211,750 - +3.2
4,211,750 - +0.3
4,211,775 - -1.1
4,211,817 + +0.7
4,211,865 - +0.2
4,211,875 + -0.5
4,211,875 + +0.1
4,211,876 - +0.6
4,211,876 - +0.7
4,211,876 - -0.2
4,211,876 - -0.2
4,211,876 - -1.6
4,211,876 - -0.3
4,211,876 - +0.0
4,211,876 - +0.5
4,211,885 - -0.6
4,211,885 - +0.8
4,211,964 + -1.0
4,212,091 + Psyr_3534 0.16 +1.6
4,212,091 + Psyr_3534 0.16 -0.5
4,212,091 + Psyr_3534 0.16 +3.8
4,212,092 - Psyr_3534 0.16 -3.3
4,212,175 + Psyr_3534 0.20 -0.7
4,212,175 + Psyr_3534 0.20 +0.2
4,212,175 + Psyr_3534 0.20 +0.3
4,212,296 + Psyr_3534 0.27 -0.3
4,212,297 - Psyr_3534 0.27 -1.0
4,212,297 - Psyr_3534 0.27 +0.1
4,212,297 - Psyr_3534 0.27 +0.0
4,212,297 - Psyr_3534 0.27 -0.2
4,212,297 - Psyr_3534 0.27 -0.7
4,212,297 - Psyr_3534 0.27 +1.2
4,212,569 + Psyr_3534 0.41 -0.9
4,212,570 - Psyr_3534 0.41 -0.2

Or see this region's nucleotide sequence