Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3522

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3521 and Psyr_3522 are separated by 129 nucleotidesPsyr_3522 and Psyr_3523 are separated by 140 nucleotides Psyr_3521: Psyr_3521 - transcriptional regulator, LysR family, at 4,196,563 to 4,197,474 _3521 Psyr_3522: Psyr_3522 - L-serine ammonia-lyase, at 4,197,604 to 4,198,980 _3522 Psyr_3523: Psyr_3523 - Peptidase M20D, amidohydrolase, at 4,199,121 to 4,200,278 _3523 Position (kb) 4197 4198 4199Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4196.648 kb on + strandat 4196.648 kb on + strandat 4196.648 kb on + strandat 4196.840 kb on + strand, within Psyr_3521at 4196.841 kb on - strand, within Psyr_3521at 4196.864 kb on + strand, within Psyr_3521at 4196.865 kb on - strand, within Psyr_3521at 4196.865 kb on - strand, within Psyr_3521at 4196.865 kb on - strand, within Psyr_3521at 4197.206 kb on + strand, within Psyr_3521at 4197.207 kb on - strand, within Psyr_3521at 4197.500 kb on + strandat 4197.500 kb on + strandat 4197.500 kb on + strandat 4197.501 kb on - strandat 4197.546 kb on - strandat 4197.562 kb on + strandat 4197.609 kb on + strandat 4197.731 kb on + strandat 4197.731 kb on + strandat 4197.732 kb on - strandat 4197.732 kb on - strandat 4197.754 kb on + strand, within Psyr_3522at 4197.754 kb on + strand, within Psyr_3522at 4197.755 kb on - strand, within Psyr_3522at 4197.864 kb on + strand, within Psyr_3522at 4198.030 kb on + strand, within Psyr_3522at 4198.030 kb on + strand, within Psyr_3522at 4198.030 kb on + strand, within Psyr_3522at 4198.030 kb on + strand, within Psyr_3522at 4198.031 kb on - strand, within Psyr_3522at 4198.031 kb on - strand, within Psyr_3522at 4198.031 kb on - strand, within Psyr_3522at 4198.031 kb on - strand, within Psyr_3522at 4198.031 kb on - strand, within Psyr_3522at 4198.115 kb on - strand, within Psyr_3522at 4198.373 kb on + strand, within Psyr_3522at 4198.374 kb on - strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.510 kb on + strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.511 kb on - strand, within Psyr_3522at 4198.643 kb on + strand, within Psyr_3522at 4198.644 kb on - strand, within Psyr_3522at 4198.710 kb on - strand, within Psyr_3522at 4198.740 kb on + strand, within Psyr_3522at 4198.741 kb on - strand, within Psyr_3522at 4198.930 kb on + strandat 4198.930 kb on + strandat 4198.930 kb on + strandat 4198.930 kb on + strandat 4198.931 kb on - strandat 4198.931 kb on - strandat 4198.931 kb on - strandat 4199.006 kb on - strandat 4199.027 kb on + strandat 4199.027 kb on + strandat 4199.027 kb on + strandat 4199.028 kb on - strandat 4199.028 kb on - strandat 4199.074 kb on + strandat 4199.074 kb on + strandat 4199.074 kb on + strandat 4199.082 kb on - strandat 4199.201 kb on - strandat 4199.203 kb on + strandat 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.257 kb on + strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.258 kb on - strand, within Psyr_3523at 4199.419 kb on + strand, within Psyr_3523at 4199.420 kb on - strand, within Psyr_3523at 4199.815 kb on + strand, within Psyr_3523at 4199.816 kb on - strand, within Psyr_3523

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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4,196,648 + -0.0
4,196,648 + -0.3
4,196,648 + -0.0
4,196,840 + Psyr_3521 0.30 -1.0
4,196,841 - Psyr_3521 0.30 -2.7
4,196,864 + Psyr_3521 0.33 -2.0
4,196,865 - Psyr_3521 0.33 +0.0
4,196,865 - Psyr_3521 0.33 -1.0
4,196,865 - Psyr_3521 0.33 +1.2
4,197,206 + Psyr_3521 0.71 +0.1
4,197,207 - Psyr_3521 0.71 -1.4
4,197,500 + -0.2
4,197,500 + -1.0
4,197,500 + -0.2
4,197,501 - -0.5
4,197,546 - +1.7
4,197,562 + -0.7
4,197,609 + -1.8
4,197,731 + -0.4
4,197,731 + +1.4
4,197,732 - -0.6
4,197,732 - +0.6
4,197,754 + Psyr_3522 0.11 +1.4
4,197,754 + Psyr_3522 0.11 -0.5
4,197,755 - Psyr_3522 0.11 -0.8
4,197,864 + Psyr_3522 0.19 -1.1
4,198,030 + Psyr_3522 0.31 +0.4
4,198,030 + Psyr_3522 0.31 -1.0
4,198,030 + Psyr_3522 0.31 +2.4
4,198,030 + Psyr_3522 0.31 -0.2
4,198,031 - Psyr_3522 0.31 +3.6
4,198,031 - Psyr_3522 0.31 +0.1
4,198,031 - Psyr_3522 0.31 -0.6
4,198,031 - Psyr_3522 0.31 -1.8
4,198,031 - Psyr_3522 0.31 +0.6
4,198,115 - Psyr_3522 0.37 +1.1
4,198,373 + Psyr_3522 0.56 -2.4
4,198,374 - Psyr_3522 0.56 -0.2
4,198,510 + Psyr_3522 0.66 -0.7
4,198,510 + Psyr_3522 0.66 -0.4
4,198,510 + Psyr_3522 0.66 +0.8
4,198,511 - Psyr_3522 0.66 -1.0
4,198,511 - Psyr_3522 0.66 -1.0
4,198,511 - Psyr_3522 0.66 -0.5
4,198,511 - Psyr_3522 0.66 -2.4
4,198,511 - Psyr_3522 0.66 -0.4
4,198,643 + Psyr_3522 0.75 +1.5
4,198,644 - Psyr_3522 0.76 -0.8
4,198,710 - Psyr_3522 0.80 -0.6
4,198,740 + Psyr_3522 0.82 -2.0
4,198,741 - Psyr_3522 0.83 -0.6
4,198,930 + -1.2
4,198,930 + -0.4
4,198,930 + -1.2
4,198,930 + -0.7
4,198,931 - -1.7
4,198,931 - -1.7
4,198,931 - -0.7
4,199,006 - +0.7
4,199,027 + -0.6
4,199,027 + +1.0
4,199,027 + -1.5
4,199,028 - +0.5
4,199,028 - -0.0
4,199,074 + -1.0
4,199,074 + -2.2
4,199,074 + +0.2
4,199,082 - +0.5
4,199,201 - +0.9
4,199,203 + +1.3
4,199,257 + Psyr_3523 0.12 +0.7
4,199,257 + Psyr_3523 0.12 +0.1
4,199,257 + Psyr_3523 0.12 +2.0
4,199,257 + Psyr_3523 0.12 -1.6
4,199,257 + Psyr_3523 0.12 -2.3
4,199,257 + Psyr_3523 0.12 +0.1
4,199,257 + Psyr_3523 0.12 -0.2
4,199,257 + Psyr_3523 0.12 -1.6
4,199,257 + Psyr_3523 0.12 +1.3
4,199,258 - Psyr_3523 0.12 +0.2
4,199,258 - Psyr_3523 0.12 +0.1
4,199,258 - Psyr_3523 0.12 +2.1
4,199,258 - Psyr_3523 0.12 +0.5
4,199,258 - Psyr_3523 0.12 -1.0
4,199,258 - Psyr_3523 0.12 -0.1
4,199,258 - Psyr_3523 0.12 +0.1
4,199,419 + Psyr_3523 0.26 -1.0
4,199,420 - Psyr_3523 0.26 +1.3
4,199,815 + Psyr_3523 0.60 +0.1
4,199,816 - Psyr_3523 0.60 +0.3

Or see this region's nucleotide sequence