Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3450

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3449 and Psyr_3450 are separated by 112 nucleotidesPsyr_3450 and Psyr_3451 are separated by 34 nucleotides Psyr_3449: Psyr_3449 - Flagellar hook-length control protein, at 4,112,426 to 4,113,829 _3449 Psyr_3450: Psyr_3450 - Hpt, at 4,113,942 to 4,114,298 _3450 Psyr_3451: Psyr_3451 - Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E, at 4,114,333 to 4,116,039 _3451 Position (kb) 4113 4114 4115Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4113.359 kb on + strand, within Psyr_3449at 4113.360 kb on - strand, within Psyr_3449at 4113.360 kb on - strand, within Psyr_3449at 4113.360 kb on - strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.703 kb on - strandat 4113.703 kb on - strandat 4113.818 kb on - strandat 4113.871 kb on + strandat 4113.881 kb on + strandat 4113.883 kb on + strandat 4113.894 kb on + strandat 4113.898 kb on + strandat 4113.898 kb on + strandat 4113.898 kb on + strandat 4113.899 kb on - strandat 4113.899 kb on - strandat 4113.928 kb on - strandat 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4114.193 kb on + strand, within Psyr_3450at 4114.265 kb on + strandat 4114.266 kb on - strandat 4114.266 kb on - strandat 4114.279 kb on + strandat 4114.280 kb on - strandat 4114.334 kb on + strandat 4114.334 kb on + strandat 4114.334 kb on + strandat 4114.334 kb on + strandat 4114.335 kb on - strandat 4114.335 kb on - strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.437 kb on - strandat 4114.437 kb on - strandat 4114.437 kb on - strandat 4114.608 kb on - strandat 4114.608 kb on - strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.685 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.705 kb on - strand, within Psyr_3451at 4114.705 kb on - strand, within Psyr_3451at 4114.759 kb on + strand, within Psyr_3451at 4114.759 kb on + strand, within Psyr_3451at 4114.760 kb on - strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4115.077 kb on + strand, within Psyr_3451at 4115.077 kb on + strand, within Psyr_3451at 4115.077 kb on + strand, within Psyr_3451at 4115.078 kb on - strand, within Psyr_3451at 4115.078 kb on - strand, within Psyr_3451at 4115.078 kb on - strand, within Psyr_3451at 4115.103 kb on - strand, within Psyr_3451at 4115.140 kb on + strand, within Psyr_3451at 4115.259 kb on + strand, within Psyr_3451at 4115.259 kb on + strand, within Psyr_3451at 4115.260 kb on - strand, within Psyr_3451

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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4,113,359 + Psyr_3449 0.66 -0.6
4,113,360 - Psyr_3449 0.67 -0.3
4,113,360 - Psyr_3449 0.67 +1.0
4,113,360 - +1.9
4,113,702 + +1.4
4,113,702 + +0.0
4,113,702 + +1.2
4,113,702 + -0.4
4,113,702 + +0.9
4,113,703 - +0.9
4,113,703 - +0.9
4,113,818 - -0.4
4,113,871 + -0.1
4,113,881 + +1.9
4,113,883 + +2.4
4,113,894 + -0.6
4,113,898 + -0.2
4,113,898 + -0.4
4,113,898 + -0.3
4,113,899 - -0.5
4,113,899 - +0.9
4,113,928 - +0.6
4,113,994 + Psyr_3450 0.15 -0.8
4,113,994 + Psyr_3450 0.15 -1.8
4,113,994 + Psyr_3450 0.15 -0.7
4,113,994 + Psyr_3450 0.15 -0.7
4,113,994 + Psyr_3450 0.15 -1.6
4,113,994 + Psyr_3450 0.15 -1.8
4,113,995 - Psyr_3450 0.15 +0.9
4,113,995 - Psyr_3450 0.15 -0.4
4,113,995 - Psyr_3450 0.15 -1.1
4,113,995 - Psyr_3450 0.15 -1.0
4,114,193 + Psyr_3450 0.70 -0.2
4,114,265 + +2.6
4,114,266 - +2.4
4,114,266 - -0.3
4,114,279 + +1.6
4,114,280 - -1.7
4,114,334 + +0.4
4,114,334 + -0.1
4,114,334 + -1.3
4,114,334 + +0.0
4,114,335 - -1.0
4,114,335 - -0.2
4,114,436 + -0.3
4,114,436 + -0.3
4,114,436 + +0.7
4,114,436 + +0.6
4,114,436 + -0.7
4,114,437 - +1.3
4,114,437 - -2.3
4,114,437 - -0.8
4,114,608 - +0.2
4,114,608 - Psyr_3451 0.16 -0.4
4,114,610 + Psyr_3451 0.16 -1.3
4,114,610 + Psyr_3451 0.16 +0.5
4,114,610 + Psyr_3451 0.16 +2.2
4,114,610 + Psyr_3451 0.16 -1.0
4,114,610 + Psyr_3451 0.16 -0.9
4,114,611 - Psyr_3451 0.16 -0.4
4,114,611 - Psyr_3451 0.16 -0.1
4,114,611 - Psyr_3451 0.16 -0.7
4,114,611 - Psyr_3451 0.16 +0.1
4,114,611 - Psyr_3451 0.16 +0.3
4,114,685 + Psyr_3451 0.21 +3.3
4,114,704 + Psyr_3451 0.22 -0.5
4,114,704 + Psyr_3451 0.22 -0.3
4,114,704 + Psyr_3451 0.22 +1.8
4,114,704 + Psyr_3451 0.22 +0.0
4,114,704 + Psyr_3451 0.22 -1.4
4,114,705 - Psyr_3451 0.22 +1.2
4,114,705 - Psyr_3451 0.22 -0.7
4,114,759 + Psyr_3451 0.25 +1.4
4,114,759 + Psyr_3451 0.25 +0.3
4,114,760 - Psyr_3451 0.25 +1.2
4,114,763 + Psyr_3451 0.25 +0.0
4,114,763 + Psyr_3451 0.25 -0.7
4,114,763 + Psyr_3451 0.25 -0.6
4,114,763 + Psyr_3451 0.25 +0.7
4,114,853 + Psyr_3451 0.30 +1.5
4,114,853 + Psyr_3451 0.30 +0.9
4,114,853 + Psyr_3451 0.30 -0.0
4,114,853 + Psyr_3451 0.30 +1.6
4,114,853 + Psyr_3451 0.30 +0.9
4,114,853 + Psyr_3451 0.30 +0.2
4,114,853 + Psyr_3451 0.30 -1.4
4,114,854 - Psyr_3451 0.31 +1.6
4,114,854 - Psyr_3451 0.31 -1.4
4,114,854 - Psyr_3451 0.31 +0.1
4,114,854 - Psyr_3451 0.31 +1.2
4,115,077 + Psyr_3451 0.44 +2.3
4,115,077 + Psyr_3451 0.44 +0.2
4,115,077 + Psyr_3451 0.44 -0.1
4,115,078 - Psyr_3451 0.44 +2.4
4,115,078 - Psyr_3451 0.44 +1.6
4,115,078 - Psyr_3451 0.44 +0.7
4,115,103 - Psyr_3451 0.45 -0.0
4,115,140 + Psyr_3451 0.47 +0.5
4,115,259 + Psyr_3451 0.54 -0.4
4,115,259 + Psyr_3451 0.54 +0.6
4,115,260 - Psyr_3451 0.54 -0.8

Or see this region's nucleotide sequence