Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3298

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
3,946,177	+		Psyr_3297	0.49	+0.7
3,946,177	+		Psyr_3297	0.49	+1.2
3,946,178	-		Psyr_3297	0.49	-0.1
3,946,178	-		Psyr_3297	0.49	-1.4
3,946,178	-		Psyr_3297	0.49	-0.5
3,946,197	+		Psyr_3297	0.51	+1.1
3,946,197	+		Psyr_3297	0.51	-0.1
3,946,197	+		Psyr_3297	0.51	+1.5
3,946,221	+		Psyr_3297	0.53	+0.1
3,946,222	-		Psyr_3297	0.54	+3.9
3,946,258	+		Psyr_3297	0.57	-1.0
3,946,258	+		Psyr_3297	0.57	-0.5
3,946,258	+		Psyr_3297	0.57	-1.4
3,946,259	-		Psyr_3297	0.57	+0.5
3,946,363	+		Psyr_3297	0.69	-1.0
3,946,363	+		Psyr_3297	0.69	-1.9
3,946,363	+		Psyr_3297	0.69	-0.1
3,946,364	-		Psyr_3297	0.69	+0.5
3,946,515	+		Psyr_3297	0.85	+0.9
3,946,524	+		Psyr_3297	0.86	+0.3
3,946,524	+		Psyr_3297	0.86	-1.8
3,946,524	+		Psyr_3297	0.86	-1.1
3,946,524	+		Psyr_3297	0.86	-1.1
3,946,525	-		Psyr_3297	0.86	-0.3
3,946,525	-		Psyr_3297	0.86	-0.5
3,946,525	-		Psyr_3297	0.86	+1.4
3,946,525	-		Psyr_3297	0.86	+0.3
3,946,629	+				-2.8
3,946,629	+				-1.5
3,946,629	+				+0.4
3,946,629	+				+2.4
3,946,630	-				-2.4
3,946,630	-				+0.1
3,946,630	-				-1.8
3,946,630	-				-1.5
3,946,630	-				-0.1
3,946,630	-				-0.8
3,946,653	+				-0.9
3,946,654	-				-0.0
3,946,656	+				+0.2
3,946,656	+				-0.1
3,946,656	+				-1.7
3,946,657	-				-0.4
3,946,657	-				+0.3
3,946,657	-				+0.6
3,946,763	-				+1.3
3,946,799	+				-0.5
3,946,799	+				+0.5
3,946,897	+				-0.6
3,946,910	+				-1.1
3,946,910	+				-1.1
3,946,910	+				+0.7
3,946,911	-				-0.7
3,946,920	+				-0.5
3,946,921	-				-0.1
3,946,941	-				-0.0
3,947,017	+				-3.2
3,947,018	-				-0.6
3,947,018	-				+0.6
3,947,021	+				+2.0
3,947,021	+				-0.1
3,947,021	+				-0.6
3,947,021	+				+0.8
3,947,021	+				-1.3
3,947,021	+				+1.9
3,947,022	-				+0.1
3,947,022	-				+0.9
3,947,022	-				-1.1
3,947,043	+				+0.1
3,947,400	+		Psyr_3298	0.69	-1.1
3,947,400	+		Psyr_3298	0.69	-1.3
3,947,400	+		Psyr_3298	0.69	-0.7
3,947,400	+		Psyr_3298	0.69	+0.9
3,947,400	+		Psyr_3298	0.69	+0.7
3,947,400	+		Psyr_3298	0.69	+0.2
3,947,400	+		Psyr_3298	0.69	-1.1
3,947,400	+		Psyr_3298	0.69	+0.6
3,947,401	-		Psyr_3298	0.69	-1.4
3,947,401	-		Psyr_3298	0.69	-2.1
3,947,401	-		Psyr_3298	0.69	-0.3
3,947,401	-		Psyr_3298	0.69	-0.5
3,947,401	-		Psyr_3298	0.69	-1.0
3,947,401	-		Psyr_3298	0.69	+0.3
3,947,401	-		Psyr_3298	0.69	-0.0
3,947,740	-				+0.6
3,947,782	+		Psyr_3299	0.12	-0.1
3,948,004	+		Psyr_3299	0.46	-0.4
3,948,005	-		Psyr_3299	0.46	+1.9
3,948,005	-		Psyr_3299	0.46	+1.9
3,948,021	+		Psyr_3299	0.48	-0.0
3,948,021	+		Psyr_3299	0.48	-0.5
3,948,022	-		Psyr_3299	0.48	-1.5
3,948,201	-		Psyr_3299	0.75	-1.1
3,948,345	+				-1.4
3,948,507	-		Psyr_3300	0.17	+0.4