Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3289

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
3,935,167	-				+2.1
3,935,192	-				+1.0
3,935,204	-				+0.6
3,935,204	-				+0.1
3,935,204	-				-0.4
3,935,204	-				+0.3
3,935,204	-				+0.3
3,935,204	-				-1.5
3,935,204	-				+1.2
3,935,206	-				+0.7
3,935,206	-				+2.0
3,935,206	-				+0.4
3,935,206	-				-0.1
3,935,206	-				-1.0
3,935,206	-				+0.5
3,935,206	-				+0.8
3,935,206	-				-0.9
3,935,206	-				+1.1
3,935,206	-				+1.3
3,935,206	-				+0.0
3,935,206	-				-0.1
3,935,208	-				-0.7
3,935,208	-				+2.5
3,935,208	-				+0.6
3,935,208	-				-1.2
3,935,208	-				-0.3
3,935,208	-				+0.5
3,935,208	-				-1.5
3,935,208	-				-0.5
3,935,208	-				+0.1
3,935,208	-				+0.9
3,935,208	-				+2.2
3,935,208	-				+0.9
3,935,208	-				-0.8
3,935,208	-				-0.7
3,935,208	-				-0.6
3,935,208	-				+0.2
3,935,208	-				+0.3
3,935,208	-				+0.6
3,935,208	-				-1.2
3,935,208	-				+0.1
3,935,210	-				-0.7
3,935,210	-				+1.6
3,935,210	-				-1.4
3,935,210	-				-0.9
3,935,447	+		Psyr_3288	0.80	+0.6
3,935,462	+		Psyr_3288	0.86	-0.2
3,935,462	+		Psyr_3288	0.86	-0.4
3,935,462	+		Psyr_3288	0.86	+1.7
3,935,463	-		Psyr_3288	0.87	+0.9
3,935,471	+				-0.4
3,935,509	+				+0.0
3,935,509	+				+1.9
3,935,510	-				-0.3
3,935,510	-				+0.9
3,935,640	+				-1.2
3,935,640	+				-0.1
3,935,640	+				-0.5
3,935,640	+				+0.9
3,935,640	+				-0.3
3,935,865	+		Psyr_3289	0.23	-1.3
3,935,866	-		Psyr_3289	0.23	-2.1
3,936,061	+		Psyr_3289	0.40	-0.3
3,936,061	+		Psyr_3289	0.40	-1.1
3,936,061	+		Psyr_3289	0.40	-1.7
3,936,672	+				+0.2
3,936,672	+				-1.3
3,936,672	+				-0.4
3,936,672	+				+0.9
3,936,672	+				-2.0
3,936,672	+				+0.9
3,936,673	-				-1.1
3,936,673	-				-1.4
3,936,673	-				+2.5
3,936,673	-				-1.5
3,936,762	+				-1.3
3,936,852	+				-0.1
3,936,852	+				-0.4
3,936,853	-				-1.3
3,936,964	-				+0.9
3,936,964	-				-1.5
3,936,964	-				+0.9
3,936,964	-				-3.0
3,937,093	-		Psyr_3290	0.15	-3.5
3,937,173	+		Psyr_3290	0.18	+0.9
3,937,174	-		Psyr_3290	0.18	+0.1
3,937,423	-		Psyr_3290	0.30	-2.6