Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3227

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
3,864,423	+		Psyr_3225	0.88	+0.9
3,864,424	-		Psyr_3225	0.88	+0.0
3,864,424	-		Psyr_3225	0.88	+1.6
3,864,424	-		Psyr_3225	0.88	+0.7
3,864,637	-				-1.8
3,864,657	+				+0.4
3,864,663	+				+0.1
3,864,663	+				+0.6
3,864,664	-				+0.2
3,864,664	-				-0.1
3,864,664	-				+0.9
3,864,681	+				-1.0
3,864,721	+				-1.5
3,864,722	-				+0.3
3,864,722	-				-0.9
3,864,731	+				+1.4
3,864,731	+				-0.7
3,864,732	-				+0.4
3,864,911	-		Psyr_3226	0.34	+1.2
3,865,179	+		Psyr_3226	0.86	+1.6
3,865,179	+		Psyr_3226	0.86	+0.0
3,865,179	+		Psyr_3226	0.86	-1.2
3,865,179	+		Psyr_3226	0.86	+0.1
3,865,180	-		Psyr_3226	0.87	-0.1
3,865,180	-		Psyr_3226	0.87	+0.5
3,865,180	-		Psyr_3226	0.87	+0.5
3,865,308	+				-0.1
3,865,309	-				+0.1
3,865,309	-				+3.4
3,865,309	-				+0.1
3,865,309	-				-0.4
3,865,309	-				+0.3
3,865,367	+				-2.0
3,865,367	+				-0.7
3,865,367	+				-0.5
3,865,367	+				-2.3
3,865,367	+				+2.2
3,865,368	-				+0.2
3,865,368	-				-1.8
3,865,368	-				-0.3
3,865,368	-				+0.3
3,865,368	-				+0.1
3,865,368	-				+0.5
3,865,368	-				+0.8
3,865,385	+				+0.9
3,865,385	+				-0.1
3,865,392	-				-1.7
3,865,555	-		Psyr_3227	0.22	+1.4
3,865,594	-		Psyr_3227	0.26	+0.9
3,865,594	-		Psyr_3227	0.26	-0.6
3,865,641	+		Psyr_3227	0.31	-0.6
3,865,641	+		Psyr_3227	0.31	-2.3
3,865,962	-		Psyr_3227	0.63	+0.8
3,865,962	-		Psyr_3227	0.63	-0.1
3,865,962	-		Psyr_3227	0.63	+1.4
3,865,962	-		Psyr_3227	0.63	-0.1
3,865,980	-		Psyr_3227	0.64	+1.0
3,866,088	-		Psyr_3227	0.75	+0.4
3,866,088	-		Psyr_3227	0.75	+1.2
3,866,097	-		Psyr_3227	0.76	+0.3
3,866,126	+		Psyr_3227	0.79	+0.3
3,866,127	-		Psyr_3227	0.79	+0.1
3,866,231	+		Psyr_3227	0.90	+0.9
3,866,231	+		Psyr_3227	0.90	+1.0
3,866,232	-		Psyr_3227	0.90	+0.6
3,866,359	+				-1.1
3,866,404	-				+0.3
3,866,593	+		Psyr_3228	0.22	+0.6
3,866,593	+		Psyr_3228	0.22	+1.3
3,866,614	+		Psyr_3228	0.23	+2.1
3,866,746	+		Psyr_3228	0.34	+0.6
3,866,746	+		Psyr_3228	0.34	+2.4
3,866,912	-		Psyr_3228	0.48	-0.9
3,866,912	-		Psyr_3228	0.48	-1.9
3,866,932	+		Psyr_3228	0.50	+0.6
3,866,933	-		Psyr_3228	0.50	-1.2
3,866,933	-		Psyr_3228	0.50	+0.9
3,867,019	+		Psyr_3228	0.57	+0.7