Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3206

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3204 and Psyr_3205 are separated by 10 nucleotidesPsyr_3205 and Psyr_3206 overlap by 4 nucleotidesPsyr_3206 and Psyr_3207 overlap by 4 nucleotides Psyr_3204: Psyr_3204 - NADH dehydrogenase subunit I, at 3,836,385 to 3,836,933 _3204 Psyr_3205: Psyr_3205 - NADH dehydrogenase subunit J, at 3,836,944 to 3,837,453 _3205 Psyr_3206: Psyr_3206 - NADH dehydrogenase subunit K, at 3,837,450 to 3,837,758 _3206 Psyr_3207: Psyr_3207 - NADH dehydrogenase subunit L, at 3,837,755 to 3,839,608 _3207 Position (kb) 3837 3838Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3836.506 kb on - strand, within Psyr_3204at 3836.785 kb on - strand, within Psyr_3204at 3837.268 kb on + strand, within Psyr_3205at 3837.915 kb on + strandat 3837.916 kb on - strandat 3837.998 kb on + strand, within Psyr_3207at 3838.076 kb on + strand, within Psyr_3207at 3838.198 kb on - strand, within Psyr_3207

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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3,836,506 - Psyr_3204 0.22 -0.5
3,836,785 - Psyr_3204 0.73 +1.3
3,837,268 + Psyr_3205 0.64 +2.9
3,837,915 + -2.1
3,837,916 - -1.1
3,837,998 + Psyr_3207 0.13 -3.0
3,838,076 + Psyr_3207 0.17 -1.1
3,838,198 - Psyr_3207 0.24 -1.4

Or see this region's nucleotide sequence