Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3082

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3081 and Psyr_3082 are separated by 16 nucleotidesPsyr_3082 and Psyr_3083 are separated by 19 nucleotides Psyr_3081: Psyr_3081 - Secretion protein HlyD, at 3,686,678 to 3,687,811 _3081 Psyr_3082: Psyr_3082 - MltA-interacting MipA, at 3,687,828 to 3,688,676 _3082 Psyr_3083: Psyr_3083 - RND efflux system, outer membrane lipoprotein, NodT, at 3,688,696 to 3,690,168 _3083 Position (kb) 3687 3688 3689Strain fitness (log2 ratio) -1 0 1 2at 3687.423 kb on + strand, within Psyr_3081at 3687.427 kb on + strand, within Psyr_3081at 3687.427 kb on + strand, within Psyr_3081at 3687.428 kb on - strand, within Psyr_3081at 3687.428 kb on - strand, within Psyr_3081at 3687.746 kb on + strandat 3687.839 kb on - strandat 3687.911 kb on - strandat 3687.959 kb on + strand, within Psyr_3082at 3687.959 kb on + strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.960 kb on - strand, within Psyr_3082at 3687.991 kb on + strand, within Psyr_3082at 3688.061 kb on - strand, within Psyr_3082at 3688.073 kb on - strand, within Psyr_3082at 3688.073 kb on - strand, within Psyr_3082at 3688.275 kb on - strand, within Psyr_3082at 3688.483 kb on + strand, within Psyr_3082at 3688.631 kb on + strandat 3688.632 kb on - strandat 3688.656 kb on - strandat 3689.053 kb on - strand, within Psyr_3083at 3689.171 kb on - strand, within Psyr_3083at 3689.331 kb on + strand, within Psyr_3083at 3689.654 kb on + strand, within Psyr_3083

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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3,687,423 + Psyr_3081 0.66 -0.3
3,687,427 + Psyr_3081 0.66 +0.6
3,687,427 + Psyr_3081 0.66 -0.5
3,687,428 - Psyr_3081 0.66 +2.5
3,687,428 - Psyr_3081 0.66 +0.5
3,687,746 + +0.3
3,687,839 - +0.2
3,687,911 - +0.2
3,687,959 + Psyr_3082 0.15 +0.3
3,687,959 + Psyr_3082 0.15 +0.3
3,687,960 - Psyr_3082 0.16 +1.2
3,687,960 - Psyr_3082 0.16 +0.6
3,687,960 - Psyr_3082 0.16 +1.1
3,687,991 + Psyr_3082 0.19 +0.5
3,688,061 - Psyr_3082 0.27 +0.5
3,688,073 - Psyr_3082 0.29 -0.7
3,688,073 - Psyr_3082 0.29 +0.5
3,688,275 - Psyr_3082 0.53 +0.4
3,688,483 + Psyr_3082 0.77 +1.0
3,688,631 + +0.4
3,688,632 - -0.3
3,688,656 - +0.3
3,689,053 - Psyr_3083 0.24 +1.3
3,689,171 - Psyr_3083 0.32 +1.8
3,689,331 + Psyr_3083 0.43 +0.5
3,689,654 + Psyr_3083 0.65 +0.4

Or see this region's nucleotide sequence